Rroxscaffold_1G00064410

Enzymatic polyprotein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000291
Physical Location & Seq
Forward (+)
86209452 .. 86209898
447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00064410.1

Sequence Viewer

Length: 447 bp
ATGCCTTTTGGTCGAAGCGAGCTCCCTCAATCTTCCGAGAGAAAGATGGATAACATCTTCAAGCATGTTGCGGAGTTCTGCGTCGTCTACATAGATGACATCCTAGTCTTCTCCAAAAACAGAGAAGAACATATGAAACACCTCCACGAGGTTGTAAAGCTGATAGTTCAGCATGGAATTATCCTAGGAGAAAAGAAAATCTTCTTTATCCTCGATGAAGTCAATTTCCTAGGAATAAACATCAAGAATGGAGTAATAAAACTCCAACCTCACATCCTTGAGAAGATCTGGAAATTTCCGGATAAAATCCCTGATGCTAAGAGTCTAGAGAGATTCCTTGGTGTCATAAATTATGGGAGAGATTTTATCCCCAAAATCTCGGGACTAACGACAATGTTATCTCCTAAGACGAGTTCCAAGAGAAAATGGAACTTCACGAGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_A3 RVT_1

Protein Analysis

148

Amino Acids

17.35

Weight (kDa)

9.68

Isoelectric Point (pI)

44.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_1 PF00078 1 - 81 3.2e-14 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000291)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00860
fragaria_vesca FvH4_1g23712 FvH4_1g29809 FvH4_1g29810 FvH4_2g02661 FvH4_2g13451 FvH4_2g17921 FvH4_2g17922 FvH4_2g19251 FvH4_2g19252 FvH4_2g28221 FvH4_2g35961 FvH4_3g10372 FvH4_3g12461 FvH4_3g12461 FvH4_3g27861 FvH4_3g34591 FvH4_3g40201 FvH4_3g44612 FvH4_4g08352 FvH4_4g12251 FvH4_4g12742 FvH4_4g13904 FvH4_4g14287 FvH4_4g15243 FvH4_4g24071 FvH4_4g33448 FvH4_5g21912 FvH4_5g39371 FvH4_6g14992 FvH4_6g15221 FvH4_6g20603 FvH4_6g31093 FvH4_6g32372 FvH4_6g33012
malus_domestica MD11G1009100.v1.1 MD13G1145000.v1.1 MD16G1138700.v1.1
prunus_persica Prupe.5G246300_v2.0.a1 Prupe.7G034800_v2.0.a1 Prupe.8G084500_v2.0.a1
pyrus_communis pycom01g18240 pycom04g00330 pycom05g09010 pycom06g01670 pycom06g01690 pycom06g07180 pycom06g11620 pycom10g05720 pycom1134g00040 pycom1134g00060 pycom12486g00010 pycom12555g00230 pycom13g21670 pycom13g23130 pycom13g23140 pycom14g10580
rosa_chinensis RchiOBHm_Chr1g0330691 RchiOBHm_Chr2g0106171 RchiOBHm_Chr2g0134731 RchiOBHm_Chr2g0142791 RchiOBHm_Chr2g0149861 RchiOBHm_Chr3g0452401 RchiOBHm_Chr3g0461881 RchiOBHm_Chr4g0401341 RchiOBHm_Chr5g0075641 RchiOBHm_Chr6g0265961 RchiOBHm_Chr7g0200201 RchiOBHm_Chr7g0237811
rosa_laevigata RLG00000002773
rosa_multiflora Rmu_co8037806.1_g000001 Rmu_co8445989.1_g000001 Rmu_sc0000745.1_g000039 Rmu_sc0004448.1_g000029 Rmu_sc0004488.1_g000002 Rmu_sc0004591.1_g000018 Rmu_sc0005065.1_g000030 Rmu_sc0005150.1_g000005 Rmu_sc0005654.1_g000011 Rmu_sc0006986.1_g000016
rosa_roxburghii Rroxscaffold_164G00436490 Rroxscaffold_175G00432490 Rroxscaffold_1G00059440 Rroxscaffold_1G00064410 Rroxscaffold_2G00100310 Rroxscaffold_2G00128170 Rroxscaffold_3G00239420 Rroxscaffold_3G00264970 Rroxscaffold_3G00271550 Rroxscaffold_4G00300240 Rroxscaffold_5G00385050 Rroxscaffold_6G00399720
rosa_rugosa Rorug02G0252200
rosa_samantha Rh2DG251900 Rh7CG329900
rosa_wichuraiana Rw0G004800 Rw1G000850 Rw1G022350 Rw2G027030 Rw2G027760 Rw2G028410 Rw2G029130 Rw2G029390 Rw2G032490 Rw2G039460 Rw2G047800 Rw2G050340 Rw3G026430 Rw4G018370 Rw4G030750 Rw4G033140 Rw5G011950 Rw5G012010 Rw5G029280 Rw5G040190 Rw5G044570 Rw5G048240 Rw6G000340 Rw6G010140 Rw6G026480 Rw7G033750 Rw7G037250 Rw7G042080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 104
AccI GTMKAC 1 cut(s) 87
AccIII TCCGGA 1 cut(s) 298
AciI CCGC 1 cut(s) 71
AcsI RAATTY 1 cut(s) 293
AfiI CCNNNNNNNGG 1 cut(s) 148
AgsI TTSAA 1 cut(s) 61
AluBI AGCT 2 cut(s) 22, 160
AluI AGCT 2 cut(s) 22, 160
Alw21I GWGCWC 1 cut(s) 24
Ama87I CYCGRG 1 cut(s) 379
Aor13HI TCCGGA 1 cut(s) 298
ApoI RAATTY 1 cut(s) 293
Asp700I GAANNNNTTC 1 cut(s) 200
AspA2I CCTAGG 2 cut(s) 184, 229
AvaI CYCGRG 1 cut(s) 379
AvrII CCTAGG 2 cut(s) 184, 229
BanII GRGCYC 1 cut(s) 24
BauI CACGAG 2 cut(s) 146, 436
BbsI GAAGAC 1 cut(s) 100
Bbv12I GWGCWC 1 cut(s) 24
BccI CCATC 1 cut(s) 40
BfaI CTAG 4 cut(s) 104, 185, 230, 326
BglII AGATCT 1 cut(s) 285
BlnI CCTAGG 2 cut(s) 184, 229
BmeT110I CYCGRG 1 cut(s) 379
BmsI GCATC 1 cut(s) 304
BpiI GAAGAC 1 cut(s) 100
BpuEI CTTGAG 1 cut(s) 299
BsaJI CCNNGG 3 cut(s) 184, 229, 337
BsaWI WCCGGW 1 cut(s) 298
Bsc4I CCNNNNNNNGG 1 cut(s) 148
BseAI TCCGGA 1 cut(s) 298
BseDI CCNNGG 3 cut(s) 184, 229, 337
BseGI GGATG 2 cut(s) 99, 273
BseLI CCNNNNNNNGG 1 cut(s) 148
BsiHKAI GWGCWC 1 cut(s) 24
BsiHKCI CYCGRG 1 cut(s) 379
BsiSI CCGG 1 cut(s) 299
BslFI GGGAC 1 cut(s) 396
BslI CCNNNNNNNGG 1 cut(s) 148
BsmFI GGGAC 1 cut(s) 396
BsoBI CYCGRG 1 cut(s) 379
Bsp1286I GDGCHC 1 cut(s) 24
Bsp13I TCCGGA 1 cut(s) 298
Bsp143I GATC 1 cut(s) 285
BspACI CCGC 1 cut(s) 71
BspEI TCCGGA 1 cut(s) 298
BssECI CCNNGG 3 cut(s) 184, 229, 337
BssMI GATC 1 cut(s) 285
BssSI CACGAG 2 cut(s) 146, 436
BssT1I CCWWGG 3 cut(s) 184, 229, 337
Bst2BI CACGAG 2 cut(s) 146, 436
BstC8I GCNNGC 1 cut(s) 20
BstDEI CTNAG 2 cut(s) 318, 405
BstENI CCTNNNNNAGG 1 cut(s) 146
BstF5I GGATG 2 cut(s) 99, 273
BstKTI GATC 1 cut(s) 288
BstMBI GATC 1 cut(s) 285
BstNSI RCATGY 1 cut(s) 68
BstV2I GAAGAC 1 cut(s) 100
BstX2I RGATCY 1 cut(s) 285
BstYI RGATCY 1 cut(s) 285
BtsCI GGATG 2 cut(s) 99, 273
Cac8I GCNNGC 1 cut(s) 20
CseI GACGC 1 cut(s) 70
CviAII CATG 2 cut(s) 65, 173
CviJI RGCY 2 cut(s) 22, 160
CviKI_1 RGCY 2 cut(s) 22, 160
DdeI CTNAG 2 cut(s) 318, 405
DpnI GATC 1 cut(s) 287
DpnII GATC 1 cut(s) 285
DrdI GACNNNNNNGTC 1 cut(s) 104
DseDI GACNNNNNNGTC 1 cut(s) 104
Ecl136II GAGCTC 1 cut(s) 22
Eco130I CCWWGG 3 cut(s) 184, 229, 337
Eco24I GRGCYC 1 cut(s) 24
Eco53kI GAGCTC 1 cut(s) 22
Eco88I CYCGRG 1 cut(s) 379
EcoICRI GAGCTC 1 cut(s) 22
EcoNI CCTNNNNNAGG 1 cut(s) 146
EcoT14I CCWWGG 3 cut(s) 184, 229, 337
EcoT38I GRGCYC 1 cut(s) 24
ErhI CCWWGG 3 cut(s) 184, 229, 337
FaeI CATG 2 cut(s) 68, 176
FaiI YATR 7 cut(s) 66, 92, 132, 134, 174, 347, 354
FalI AAGNNNNNCTT 2 cut(s) 185, 217
FaqI GGGAC 1 cut(s) 396
FatI CATG 2 cut(s) 64, 172
FauNDI CATATG 1 cut(s) 132
FblI GTMKAC 1 cut(s) 87
FokI GGATG 2 cut(s) 86, 260
FriOI GRGCYC 1 cut(s) 24
FspBI CTAG 4 cut(s) 104, 185, 230, 326
HapII CCGG 1 cut(s) 299
HgaI GACGC 1 cut(s) 70
Hin1II CATG 2 cut(s) 68, 176
HinfI GANTC 2 cut(s) 322, 333
HpaII CCGG 1 cut(s) 299
Hpy166II GTNNAC 1 cut(s) 88
Hpy188I TCNGA 1 cut(s) 37
Hpy188III TCNNGA 6 cut(s) 244, 289, 299, 326, 381, 436
Hpy8I GTNNAC 1 cut(s) 88
Hpy99I CGWCG 1 cut(s) 86
HpyF3I CTNAG 2 cut(s) 318, 405
Hsp92II CATG 2 cut(s) 68, 176
Kpn2I TCCGGA 1 cut(s) 298
Kzo9I GATC 1 cut(s) 285
LmnI GCTCC 1 cut(s) 27
LpnPI CCDG 3 cut(s) 274, 312, 324
LweI GCATC 1 cut(s) 304
MaeI CTAG 4 cut(s) 104, 185, 230, 326
MalI GATC 1 cut(s) 287
MboI GATC 1 cut(s) 285
MboII GAAGA 6 cut(s) 24, 49, 100, 137, 193, 295
MflI RGATCY 1 cut(s) 285
MhlI GDGCHC 1 cut(s) 24
MluCI AATT 4 cut(s) 177, 223, 293, 349
MlyI GAGTC 1 cut(s) 331
MmeI TCCRAC 1 cut(s) 289
MnlI CCTC 5 cut(s) 36, 142, 152, 221, 279
MroI TCCGGA 1 cut(s) 298
MroXI GAANNNNTTC 1 cut(s) 200
MspI CCGG 1 cut(s) 299
NdeI CATATG 1 cut(s) 132
NdeII GATC 1 cut(s) 285
NlaIII CATG 2 cut(s) 68, 176
NspI RCATGY 1 cut(s) 68
PcsI WCGNNNNNNNCGW 1 cut(s) 386
PdmI GAANNNNTTC 1 cut(s) 200
PfeI GAWTC 1 cut(s) 333
PleI GAGTC 1 cut(s) 330
PpsI GAGTC 1 cut(s) 330
Psp124BI GAGCTC 1 cut(s) 24
PsuI RGATCY 1 cut(s) 285
SacI GAGCTC 1 cut(s) 24
Sau3AI GATC 1 cut(s) 285
SchI GAGTC 1 cut(s) 331
SduI GDGCHC 1 cut(s) 24
SetI ASST 5 cut(s) 24, 144, 153, 162, 271
SfaNI GCATC 1 cut(s) 304
SmlI CTYRAG 1 cut(s) 278
SmoI CTYRAG 1 cut(s) 278
Sse9I AATT 4 cut(s) 177, 223, 293, 349
SsiI CCGC 1 cut(s) 71
SspMI CTAG 4 cut(s) 104, 185, 230, 326
SstI GAGCTC 1 cut(s) 24
StyI CCWWGG 3 cut(s) 184, 229, 337
TaqI TCGA 2 cut(s) 13, 213
TasI AATT 4 cut(s) 177, 223, 293, 349
TfiI GAWTC 1 cut(s) 333
TspDTI ATGAA 2 cut(s) 149, 231
XagI CCTNNNNNAGG 1 cut(s) 146
XapI RAATTY 1 cut(s) 293
XbaI TCTAGA 1 cut(s) 325
XceI RCATGY 1 cut(s) 68
XmaJI CCTAGG 2 cut(s) 184, 229
XmiI GTMKAC 1 cut(s) 87
XmnI GAANNNNTTC 1 cut(s) 200
XspI CTAG 4 cut(s) 104, 185, 230, 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.