Rw2G028410

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000291
Physical Location & Seq
Reverse (-)
45413838 .. 45415157
1320 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G028410.1

Sequence Viewer

Length: 1146 bp
ATGAGGGAGTGTCACGACACCCTGTGGGCAGGCCACCCTGGATGGCAGAGGACCCATGCACTCCTCAAGCAGGGGTACTATTGGCCCCAGATGCGAGACGATGTCACGGAATACACCAAGACTTGCCTGACATGCCAGCAAGACAAGATTGAGCGCCAAAAGACTCCAGGGCTGTTGGAACCGCTGTCTATTCCTACTCGCCCGTGGGAGAGTGTCTCCCTTGACTTTATTACTAACCTCCCGAAGGTGGGAGACTTATCAGGCATCCTGGTTGTGGTTGACAGGTTTTCAAAGTATGCCACCTTTGTGCCAACTCCAAAGTACTGTTCGGCGGAAGACACAGCAAGCCTCTTCTTCAAGCATGTTGTAAAGTATTGGGGTGTGCCTCAGAACATAGTCAGCGATCGAGACACTAGGTTCACGGGAACATTCTGGACCGAGCTATTCAACTCATCCACCAACAAGAGTGCTTTTGAAATTGTCACTGGCCAACAGCCTCTCTTGCCGCATACGGTGCAAGAAGTCTACAAAGGGGCGAATCCGCGTGCTTTCAACTTCACAAAAGAGTGGAAGACTAATGCCGAGATCGCTCAAGCCTATCTAGAGAAAGCGGCGGGGAGGATGAAGAAGTGGGCAGATCAAGGCCGCAAGCTCAGGGAGTTTCAGGCAGGGGACATGGTCCTTGTCAAGCTGCTTCCGGAACAACTCAGGTTCCTGCGCTCCAGAGACAAACGACTATTCAGGAAGTATGAAGGACCGCTCCCCATCATTGCTAAAGTGGGGAAGTGCTCCTACAAAGTCGATATTCCCGCCTGGATGAGAGTTCACCCCGTCTTCCACGTCAGCAACCTCAAGCCGCACCTGCCAGACGGTGAAGATCAAGCACGCAACCAGCCTGTTCGGGAGCACGTCGACATCAGACCACCAAAGCCGAAAGAAGTGGAGGAGATTCTAGCAGAGAGAGTGATCCGAGTGTCAAGGCGCCCATGCCAGCAGTTCCTGGTCAAGTGGAAGAGTTTGGGAGATGAAGAAACTAGTTGGGAGAATGCTGACGTCCTGAAGAAGAAGTTCCAGCAGAAGATTGAAGACTTCAAGATCAAGGCAGTCGTCGAGAGCGCCGACAGCTTAAGTGGGGGAGGATGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease_2 Chromo RVP_2 RVT_1 Retrotrans_gag gag-asp_proteas rve

Protein Analysis

381

Amino Acids

43.98

Weight (kDa)

9.24

Isoelectric Point (pI)

31.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Integrase_H2C2 PF17921 1 - 49 2.5e-19 Integrase zinc binding domain
SH3_Tf2-1 PF24626 224 - 287 1.9e-15 Tf2-1-like, SH3 domain
Chromo PF00385 313 - 365 1.8e-11 Chromo (CHRromatin Organisation MOdifier) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000291)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00860
fragaria_vesca FvH4_1g23712 FvH4_1g29809 FvH4_1g29810 FvH4_2g02661 FvH4_2g13451 FvH4_2g17921 FvH4_2g17922 FvH4_2g19251 FvH4_2g19252 FvH4_2g28221 FvH4_2g35961 FvH4_3g10372 FvH4_3g12461 FvH4_3g12461 FvH4_3g27861 FvH4_3g34591 FvH4_3g40201 FvH4_3g44612 FvH4_4g08352 FvH4_4g12251 FvH4_4g12742 FvH4_4g13904 FvH4_4g14287 FvH4_4g15243 FvH4_4g24071 FvH4_4g33448 FvH4_5g21912 FvH4_5g39371 FvH4_6g14992 FvH4_6g15221 FvH4_6g20603 FvH4_6g31093 FvH4_6g32372 FvH4_6g33012
malus_domestica MD11G1009100.v1.1 MD13G1145000.v1.1 MD16G1138700.v1.1
prunus_persica Prupe.5G246300_v2.0.a1 Prupe.7G034800_v2.0.a1 Prupe.8G084500_v2.0.a1
pyrus_communis pycom01g18240 pycom04g00330 pycom05g09010 pycom06g01670 pycom06g01690 pycom06g07180 pycom06g11620 pycom10g05720 pycom1134g00040 pycom1134g00060 pycom12486g00010 pycom12555g00230 pycom13g21670 pycom13g23130 pycom13g23140 pycom14g10580
rosa_chinensis RchiOBHm_Chr1g0330691 RchiOBHm_Chr2g0106171 RchiOBHm_Chr2g0134731 RchiOBHm_Chr2g0142791 RchiOBHm_Chr2g0149861 RchiOBHm_Chr3g0452401 RchiOBHm_Chr3g0461881 RchiOBHm_Chr4g0401341 RchiOBHm_Chr5g0075641 RchiOBHm_Chr6g0265961 RchiOBHm_Chr7g0200201 RchiOBHm_Chr7g0237811
rosa_laevigata RLG00000002773
rosa_multiflora Rmu_co8037806.1_g000001 Rmu_co8445989.1_g000001 Rmu_sc0000745.1_g000039 Rmu_sc0004448.1_g000029 Rmu_sc0004488.1_g000002 Rmu_sc0004591.1_g000018 Rmu_sc0005065.1_g000030 Rmu_sc0005150.1_g000005 Rmu_sc0005654.1_g000011 Rmu_sc0006986.1_g000016
rosa_roxburghii Rroxscaffold_164G00436490 Rroxscaffold_175G00432490 Rroxscaffold_1G00059440 Rroxscaffold_1G00064410 Rroxscaffold_2G00100310 Rroxscaffold_2G00128170 Rroxscaffold_3G00239420 Rroxscaffold_3G00264970 Rroxscaffold_3G00271550 Rroxscaffold_4G00300240 Rroxscaffold_5G00385050 Rroxscaffold_6G00399720
rosa_rugosa Rorug02G0252200
rosa_samantha Rh2DG251900 Rh7CG329900
rosa_wichuraiana Rw0G004800 Rw1G000850 Rw1G022350 Rw2G027030 Rw2G027760 Rw2G028410 Rw2G029130 Rw2G029390 Rw2G032490 Rw2G039460 Rw2G047800 Rw2G050340 Rw3G026430 Rw4G018370 Rw4G030750 Rw4G033140 Rw5G011950 Rw5G012010 Rw5G029280 Rw5G040190 Rw5G044570 Rw5G048240 Rw6G000340 Rw6G010140 Rw6G026480 Rw7G033750 Rw7G037250 Rw7G042080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 870
AatII GACGTC 1 cut(s) 1056
Acc36I ACCTGC 1 cut(s) 870
AccB1I GGYRCC 1 cut(s) 981
AccBSI CCGCTC 1 cut(s) 760
AccI GTMKAC 2 cut(s) 525, 912
AccII CGCG 1 cut(s) 544
AccIII TCCGGA 1 cut(s) 697
AclWI GGATC 1 cut(s) 961
AcoI YGGCCR 1 cut(s) 487
AcuI CTGAAG 1 cut(s) 1079
AcyI GRCGYC 2 cut(s) 982, 1053
AdeI CACNNNGTG 1 cut(s) 24
AfaI GTAC 2 cut(s) 77, 323
AfiI CCNNNNNNNGG 5 cut(s) 70, 244, 247, 248, 274
AflII CTTAAG 1 cut(s) 1126
AgsI TTSAA 7 cut(s) 291, 358, 448, 476, 553, 1085, 1093
AhlI ACTAGT 1 cut(s) 1034
AjiI CACGTC 2 cut(s) 841, 910
AjnI CCWGG 5 cut(s) 37, 166, 267, 812, 999
AjuI GAANNNNNNNTTGG 2 cut(s) 310, 342
AleI CACNNNNGTG 1 cut(s) 305
AluBI AGCT 4 cut(s) 442, 652, 691, 1125
AluI AGCT 4 cut(s) 442, 652, 691, 1125
Alw21I GWGCWC 2 cut(s) 791, 909
Alw26I GTCTC 5 cut(s) 90, 220, 246, 402, 720
AlwI GGATC 1 cut(s) 961
AlwNI CAGNNNCTG 1 cut(s) 1000
Aor13HI TCCGGA 1 cut(s) 697
AoxI GGCC 4 cut(s) 31, 83, 487, 643
ApeKI GCWGC 1 cut(s) 691
Asp700I GAANNNNTTC 1 cut(s) 1067
AspLEI GCGC 4 cut(s) 156, 720, 984, 1118
AspS9I GGNCC 5 cut(s) 51, 84, 435, 679, 755
AsuHPI GGTGA 2 cut(s) 818, 884
AvaII GGWCC 4 cut(s) 51, 435, 679, 755
BalI TGGCCA 1 cut(s) 489
BanI GGYRCC 1 cut(s) 981
BarI GAAGNNNNNNTAC 2 cut(s) 776, 808
BbsI GAAGAC 4 cut(s) 342, 578, 826, 1092
Bbv12I GWGCWC 2 cut(s) 791, 909
BbvI GCAGC 1 cut(s) 678
BccI CCATC 2 cut(s) 36, 773
BciT130I CCWGG 5 cut(s) 39, 168, 269, 814, 1001
BcoDI GTCTC 5 cut(s) 90, 220, 246, 402, 720
BcuI ACTAGT 1 cut(s) 1034
BfaI CTAG 4 cut(s) 414, 602, 953, 1035
BfoI RGCGCY 3 cut(s) 157, 985, 1119
BfrI CTTAAG 1 cut(s) 1126
BfuAI ACCTGC 1 cut(s) 870
BisI GCNGC 5 cut(s) 506, 612, 646, 692, 857
BlsI GCNGC 5 cut(s) 507, 613, 647, 693, 858
BmcAI AGTACT 1 cut(s) 323
Bme1390I CCNGG 5 cut(s) 39, 168, 269, 814, 1001
Bme18I GGWCC 4 cut(s) 51, 435, 679, 755
BmgBI CACGTC 2 cut(s) 841, 910
BmgT120I GGNCC 5 cut(s) 51, 84, 435, 679, 755
BmiI GGNNCC 5 cut(s) 53, 86, 180, 713, 983
BmrFI CCNGG 5 cut(s) 39, 168, 269, 814, 1001
BmsI GCATC 2 cut(s) 81, 273
BpiI GAAGAC 4 cut(s) 342, 578, 826, 1092
BplI GAGNNNNNCTC 2 cut(s) 200, 232
BpmI CTGGAG 2 cut(s) 150, 706
Bpu10I CCTNAGC 1 cut(s) 653
BpuEI CTTGAG 3 cut(s) 50, 576, 836
BsaHI GRCGYC 2 cut(s) 982, 1053
BsaJI CCNNGG 3 cut(s) 37, 167, 203
BsaWI WCCGGW 1 cut(s) 697
Bsc4I CCNNNNNNNGG 5 cut(s) 70, 244, 247, 248, 274
Bse1I ACTGG 1 cut(s) 490
Bse3DI GCAATG 1 cut(s) 768
BseAI TCCGGA 1 cut(s) 697
BseBI CCWGG 5 cut(s) 39, 168, 269, 814, 1001
BseDI CCNNGG 3 cut(s) 37, 167, 203
BseGI GGATG 6 cut(s) 47, 264, 452, 627, 822, 1145
BseLI CCNNNNNNNGG 5 cut(s) 70, 244, 247, 248, 274
BseMI GCAATG 1 cut(s) 768
BseMII CTCAG 3 cut(s) 401, 667, 721
BseNI ACTGG 1 cut(s) 490
BseRI GAGGAG 2 cut(s) 53, 959
BseXI GCAGC 1 cut(s) 678
Bsh1236I CGCG 1 cut(s) 544
Bsh1285I CGRYCG 1 cut(s) 406
BshFI GGCC 4 cut(s) 33, 85, 489, 645
BshNI GGYRCC 1 cut(s) 981
BsiEI CGRYCG 1 cut(s) 406
BsiHKAI GWGCWC 2 cut(s) 791, 909
BsiSI CCGG 1 cut(s) 698
BslFI GGGAC 1 cut(s) 686
BslI CCNNNNNNNGG 5 cut(s) 70, 244, 247, 248, 274
BsmAI GTCTC 5 cut(s) 90, 220, 246, 402, 720
BsmBI CGTCTC 1 cut(s) 90
BsmFI GGGAC 1 cut(s) 686
BsmI GAATGC 1 cut(s) 1051
BsnI GGCC 4 cut(s) 33, 85, 489, 645
Bsp1286I GDGCHC 2 cut(s) 791, 909
Bsp13I TCCGGA 1 cut(s) 697
Bsp143I GATC 6 cut(s) 403, 585, 637, 877, 966, 1095
BspANI GGCC 4 cut(s) 33, 85, 489, 645
BspCNI CTCAG 3 cut(s) 400, 666, 720
BspEI TCCGGA 1 cut(s) 697
BspFNI CGCG 1 cut(s) 544
BspLI GGNNCC 5 cut(s) 53, 86, 180, 713, 983
BspMI ACCTGC 1 cut(s) 870
BspPI GGATC 1 cut(s) 961
BspT107I GGYRCC 1 cut(s) 981
BspTI CTTAAG 1 cut(s) 1126
BsrBI CCGCTC 1 cut(s) 760
BsrDI GCAATG 1 cut(s) 768
BsrI ACTGG 1 cut(s) 490
BssECI CCNNGG 3 cut(s) 37, 167, 203
BssMI GATC 6 cut(s) 403, 585, 637, 877, 966, 1095
BssNI GRCGYC 2 cut(s) 982, 1053
Bst2UI CCWGG 5 cut(s) 39, 168, 269, 814, 1001
Bst4CI ACNGT 3 cut(s) 326, 514, 872
Bst6I CTCTTC 2 cut(s) 356, 1007
BstACI GRCGYC 2 cut(s) 982, 1053
BstAFI CTTAAG 1 cut(s) 1126
BstAPI GCANNNNNTGC 1 cut(s) 514
BstC8I GCNNGC 7 cut(s) 31, 137, 346, 546, 650, 886, 992
BstDEI CTNAG 3 cut(s) 387, 653, 707
BstDSI CCRYGG 1 cut(s) 203
BstENI CCTNNNNNAGG 2 cut(s) 68, 242
BstF5I GGATG 6 cut(s) 47, 264, 452, 627, 822, 1145
BstFNI CGCG 1 cut(s) 544
BstH2I RGCGCY 3 cut(s) 157, 985, 1119
BstHHI GCGC 4 cut(s) 156, 720, 984, 1118
BstKTI GATC 6 cut(s) 406, 588, 640, 880, 969, 1098
BstMAI GTCTC 5 cut(s) 90, 220, 246, 402, 720
BstMBI GATC 6 cut(s) 403, 585, 637, 877, 966, 1095
BstMCI CGRYCG 1 cut(s) 406
BstMWI GCNNNNNNNGC 7 cut(s) 91, 132, 502, 514, 587, 862, 1122
BstNI CCWGG 5 cut(s) 39, 168, 269, 814, 1001
BstNSI RCATGY 2 cut(s) 135, 365
BstSCI CCNGG 5 cut(s) 37, 166, 267, 812, 999
BstUI CGCG 1 cut(s) 544
BstV1I GCAGC 1 cut(s) 678
BstV2I GAAGAC 4 cut(s) 342, 578, 826, 1092
BsuRI GGCC 4 cut(s) 33, 85, 489, 645
BtgI CCRYGG 1 cut(s) 203
BtrI CACGTC 2 cut(s) 841, 910
BtsCI GGATG 6 cut(s) 47, 264, 452, 627, 822, 1145
BtsIMutI CAGTG 1 cut(s) 483
BveI ACCTGC 1 cut(s) 870
Cac8I GCNNGC 7 cut(s) 31, 137, 346, 546, 650, 886, 992
CaiI CAGNNNCTG 1 cut(s) 1000
CfoI GCGC 4 cut(s) 156, 720, 984, 1118
Cfr13I GGNCC 5 cut(s) 51, 84, 435, 679, 755
Csp6I GTAC 2 cut(s) 76, 322
CviAII CATG 5 cut(s) 56, 132, 362, 676, 987
CviQI GTAC 2 cut(s) 76, 322
DdeI CTNAG 3 cut(s) 387, 653, 707
DinI GGCGCC 1 cut(s) 983
DpnI GATC 6 cut(s) 405, 587, 639, 879, 968, 1097
DpnII GATC 6 cut(s) 403, 585, 637, 877, 966, 1095
DraIII CACNNNGTG 1 cut(s) 24
EaeI YGGCCR 1 cut(s) 487
Eam1104I CTCTTC 2 cut(s) 356, 1007
EarI CTCTTC 2 cut(s) 356, 1007
EciI GGCGGA 1 cut(s) 347
Eco47I GGWCC 4 cut(s) 51, 435, 679, 755
Eco57I CTGAAG 1 cut(s) 1079
EcoNI CCTNNNNNAGG 2 cut(s) 68, 242
EcoO109I RGGNCCY 1 cut(s) 51
EcoRII CCWGG 5 cut(s) 37, 166, 267, 812, 999
EgeI GGCGCC 1 cut(s) 983
EheI GGCGCC 1 cut(s) 983
Esp3I CGTCTC 1 cut(s) 90
FaeI CATG 5 cut(s) 59, 135, 365, 679, 990
FaiI YATR 9 cut(s) 57, 133, 297, 363, 395, 510, 677, 750, 988
FaqI GGGAC 1 cut(s) 686
FatI CATG 5 cut(s) 55, 131, 361, 675, 986
FauI CCCGC 2 cut(s) 607, 817
FblI GTMKAC 2 cut(s) 525, 912
Fnu4HI GCNGC 5 cut(s) 506, 612, 646, 692, 857
FokI GGATG 5 cut(s) 54, 251, 439, 634, 829
Fsp4HI GCNGC 5 cut(s) 506, 612, 646, 692, 857
FspBI CTAG 4 cut(s) 414, 602, 953, 1035
GlaI GCGC 4 cut(s) 155, 719, 983, 1117
GluI GCNGC 5 cut(s) 506, 612, 646, 692, 857
GsuI CTGGAG 2 cut(s) 150, 706
HaeII RGCGCY 3 cut(s) 157, 985, 1119
HaeIII GGCC 4 cut(s) 33, 85, 489, 645
HapII CCGG 1 cut(s) 698
HhaI GCGC 4 cut(s) 156, 720, 984, 1118
Hin1I GRCGYC 2 cut(s) 982, 1053
Hin1II CATG 5 cut(s) 59, 135, 365, 679, 990
Hin6I GCGC 4 cut(s) 154, 718, 982, 1116
HinP1I GCGC 4 cut(s) 154, 718, 982, 1116
HincII GTYRAC 2 cut(s) 280, 913
HindII GTYRAC 2 cut(s) 280, 913
HinfI GANTC 3 cut(s) 163, 538, 949
HpaII CCGG 1 cut(s) 698
HphI GGTGA 2 cut(s) 818, 884
Hpy166II GTNNAC 5 cut(s) 280, 420, 526, 826, 913
Hpy188I TCNGA 3 cut(s) 390, 920, 971
Hpy8I GTNNAC 5 cut(s) 280, 420, 526, 826, 913
Hpy99I CGWCG 2 cut(s) 914, 1112
HpyAV CCTTC 2 cut(s) 238, 746
HpyCH4III ACNGT 3 cut(s) 326, 514, 872
HpyCH4IV ACGT 3 cut(s) 840, 909, 1053
HpyCH4V TGCA 2 cut(s) 59, 517
HpyF10VI GCNNNNNNNGC 7 cut(s) 91, 132, 502, 514, 587, 862, 1122
HpyF3I CTNAG 3 cut(s) 387, 653, 707
HpySE526I ACGT 3 cut(s) 840, 909, 1053
Hsp92I GRCGYC 2 cut(s) 982, 1053
Hsp92II CATG 5 cut(s) 59, 135, 365, 679, 990
HspAI GCGC 4 cut(s) 154, 718, 982, 1116
KasI GGCGCC 1 cut(s) 981
Kpn2I TCCGGA 1 cut(s) 697
Kzo9I GATC 6 cut(s) 403, 585, 637, 877, 966, 1095
LmnI GCTCC 4 cut(s) 725, 765, 794, 904
Lsp1109I GCAGC 1 cut(s) 678
LweI GCATC 2 cut(s) 81, 273
MaeI CTAG 4 cut(s) 414, 602, 953, 1035
MaeII ACGT 3 cut(s) 840, 909, 1053
MaeIII GTNAC 3 cut(s) 11, 103, 481
MalI GATC 6 cut(s) 405, 587, 639, 879, 968, 1097
MbiI CCGCTC 1 cut(s) 760
MboI GATC 6 cut(s) 403, 585, 637, 877, 966, 1095
MhlI GDGCHC 2 cut(s) 791, 909
MlsI TGGCCA 1 cut(s) 489
MluCI AATT 1 cut(s) 477
MluNI TGGCCA 1 cut(s) 489
Mly113I GGCGCC 1 cut(s) 982
MlyI GAGTC 1 cut(s) 157
MmeI TCCRAC 1 cut(s) 156
Mox20I TGGCCA 1 cut(s) 489
MroI TCCGGA 1 cut(s) 697
MroXI GAANNNNTTC 1 cut(s) 1067
MscI TGGCCA 1 cut(s) 489
MseI TTAA 1 cut(s) 1127
MslI CAYNNNNRTG 1 cut(s) 305
Msp20I TGGCCA 1 cut(s) 489
MspA1I CMGCKG 1 cut(s) 184
MspCI CTTAAG 1 cut(s) 1126
MspI CCGG 1 cut(s) 698
MspR9I CCNGG 5 cut(s) 39, 168, 269, 814, 1001
Mva1269I GAATGC 1 cut(s) 1051
MvaI CCWGG 5 cut(s) 39, 168, 269, 814, 1001
MvnI CGCG 1 cut(s) 544
MwoI GCNNNNNNNGC 7 cut(s) 91, 132, 502, 514, 587, 862, 1122
NarI GGCGCC 1 cut(s) 982
NdeII GATC 6 cut(s) 403, 585, 637, 877, 966, 1095
NlaIII CATG 5 cut(s) 59, 135, 365, 679, 990
NlaIV GGNNCC 5 cut(s) 53, 86, 180, 713, 983
NmeAIII GCCGAG 1 cut(s) 607
NmuCI GTSAC 3 cut(s) 11, 103, 481
NspI RCATGY 2 cut(s) 135, 365
OliI CACNNNNGTG 1 cut(s) 305
PaqCI CACCTGC 1 cut(s) 870
PcsI WCGNNNNNNNCGW 1 cut(s) 1116
PctI GAATGC 1 cut(s) 1051
PdmI GAANNNNTTC 1 cut(s) 1067
PfeI GAWTC 2 cut(s) 538, 949
PflFI GACNNNGTC 2 cut(s) 101, 677
PkrI GCNGC 5 cut(s) 507, 613, 647, 693, 858
Ple19I CGATCG 1 cut(s) 406
PleI GAGTC 1 cut(s) 157
PluTI GGCGCC 1 cut(s) 985
PpsI GAGTC 1 cut(s) 157
PpuMI RGGWCCY 1 cut(s) 51
Psp5II RGGWCCY 1 cut(s) 51
Psp6I CCWGG 5 cut(s) 37, 166, 267, 812, 999
PspGI CCWGG 5 cut(s) 37, 166, 267, 812, 999
PspN4I GGNNCC 5 cut(s) 53, 86, 180, 713, 983
PspPI GGNCC 5 cut(s) 51, 84, 435, 679, 755
PspPPI RGGWCCY 1 cut(s) 51
PstNI CAGNNNCTG 1 cut(s) 1000
PsyI GACNNNGTC 2 cut(s) 101, 677
PvuI CGATCG 1 cut(s) 406
RsaI GTAC 2 cut(s) 77, 323
RsaNI GTAC 2 cut(s) 76, 322
RseI CAYNNNNRTG 1 cut(s) 305
SalI GTCGAC 1 cut(s) 911
SaqAI TTAA 1 cut(s) 1127
SatI GCNGC 5 cut(s) 506, 612, 646, 692, 857
Sau3AI GATC 6 cut(s) 403, 585, 637, 877, 966, 1095
Sau96I GGNCC 5 cut(s) 51, 84, 435, 679, 755
ScaI AGTACT 1 cut(s) 323
SchI GAGTC 1 cut(s) 157
ScrFI CCNGG 5 cut(s) 39, 168, 269, 814, 1001
SduI GDGCHC 2 cut(s) 791, 909
SfaNI GCATC 2 cut(s) 81, 273
SfoI GGCGCC 1 cut(s) 983
SinI GGWCC 4 cut(s) 51, 435, 679, 755
SmiMI CAYNNNNRTG 1 cut(s) 305
SmlI CTYRAG 4 cut(s) 65, 591, 851, 1126
SmoI CTYRAG 4 cut(s) 65, 591, 851, 1126
SpeI ACTAGT 1 cut(s) 1034
Sse9I AATT 1 cut(s) 477
SspDI GGCGCC 1 cut(s) 981
SspMI CTAG 4 cut(s) 414, 602, 953, 1035
StyD4I CCNGG 5 cut(s) 37, 166, 267, 812, 999
TaaI ACNGT 3 cut(s) 326, 514, 872
TaiI ACGT 3 cut(s) 843, 912, 1056
TaqI TCGA 4 cut(s) 406, 801, 912, 1110
TaqII GACCGA 1 cut(s) 452
TasI AATT 1 cut(s) 477
TatI WGTACW 1 cut(s) 321
TauI GCSGC 4 cut(s) 508, 614, 648, 859
TfiI GAWTC 2 cut(s) 538, 949
Tru1I TTAA 1 cut(s) 1127
Tru9I TTAA 1 cut(s) 1127
TscAI CASTG 1 cut(s) 490
TseFI GTSAC 3 cut(s) 11, 103, 481
TseI GCWGC 1 cut(s) 691
Tsp45I GTSAC 3 cut(s) 11, 103, 481
TspDTI ATGAA 3 cut(s) 638, 765, 1041
TspGWI ACGGA 1 cut(s) 122
TspRI CASTG 1 cut(s) 490
Tth111I GACNNNGTC 2 cut(s) 101, 677
Vha464I CTTAAG 1 cut(s) 1126
VpaK11BI GGWCC 4 cut(s) 51, 435, 679, 755
XagI CCTNNNNNAGG 2 cut(s) 68, 242
XbaI TCTAGA 1 cut(s) 601
XceI RCATGY 2 cut(s) 135, 365
XmiI GTMKAC 2 cut(s) 525, 912
XmnI GAANNNNTTC 1 cut(s) 1067
XspI CTAG 4 cut(s) 414, 602, 953, 1035
ZraI GACGTC 1 cut(s) 1054
ZrmI AGTACT 1 cut(s) 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.