Rw2G029390

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000291
Physical Location & Seq
Reverse (-)
47551781 .. 47557380
5600 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G029390.1

Sequence Viewer

Length: 3393 bp
ATGGCGGCCCAATTTGAGCAACAGTTAGATCGTGCTAAAGGAGGAAAACGAAAAGTGACTAGTAGACAGGAAATGGCAGTTCACGTTTACCCCGCCATCAATTCCATGAATAATCAGATTGGAGAAATTCGTGGATTGTTGGGTGAGAGGAACAACAACAACAACAACAACAACAACAATAATCGGCGTAGAGATGGGGAAGGAGGCCAGCGAGTTAGGGCTCCACGTGGTGAAGTTGTTGATAATACATCAGAATCTGAGCCTGAAGAAGAAATTTTACAACAAGAGCAACATGGACAAGCTGACCAGGATTACAAAGTCAAGGCCGAAATTCCTTTCTTTTCGGGCAATTTGGGTGTAGAAGATTATTTGGATTGGCAGCTTCAGGTGGACAGATTCTTTGAGATTATGGAAGTGCCTGAACACAAGCAAGTTAAGCATGTTGCCTGGAGATTGAAGAGTACTGCTGCAGTATGGTGGGATAAGTTGCAGAACACTCGAAAGAAGCAGAGGAAGCAGGGTGTTAGAACATGGCGAAGAATGAAGCAGTTGATGATGGAGAGGTTCTTGCCAGATGATTATGAGCAGATTCTATATAGGCTGTATATTGAATGTGTCCAGGGAACTAGGACGGTGGCTGATTATACGGCTGAGTTCTTACGCTATTCAGAGCGTAATGAATTGGGAGAAACTGAAGGCCAGAAGGTGGCTCGCTATATCAGTGGGCTGAAGCCTTCCATTCAGGAGAGAATTGGGTTACAAACTGTTCATACTATGGCCGAAGTGACAAACCTAGCATTGAAAGCAGAGTTGTTGGAGAAACCTTCACGAGCTTCTTCTTTCCAGAGGTATAACTACCAAAGGAGTGCAGATTTGGTTAATGCCTCAACTGCCAAGGGTACAACTACGCTGCAGAGAGCAGAAAACGCCTTTAAAGCTTCTAATCCTCCTTTTAAAGGCGCGGGCAGTTCTAACAATTCTAGTGGTGTTCAAAATAGAGCCCCGAATCAGAGGTTCAATAATCCTTATGCTAGACCTACAGGAGATGTCTGTTATCGATGCAACAAGCCTGGGCATAGATCTAATGTGTGTCCTGAGAGGAGACAAACTGCCCTTATAGATGATTATGATGAGGATGAAGAAGAAGTTAGGAGAGATGGCGATTATGATGGAGCTGAGTTTGCGGAGGAGGAATCCCCTGAGAAGGTTAACATTGTGTTGCAACGGGTTCTACTATGTCCTAAAGAAGAGGGGCAGCGGCGCAATATTTTCAGGTCACTTTGTTCCATTAATAACAAAGTGTGTAATTTAATTGTGGATAATGGGAGCTGCGAAAATTTTGTAGCCAAGAAACTGGTGGAGTATTTGCAGTTGCCGGCGCAGCCTCATGAGGCACCTTATTCCCTCGGGTGGGTCAAGAAAGGTCCACAAGTTCGAGTTGTTGAATCCTGCAAAGTGCCGGTATCCATTGGTAAGCATTATAAAGATGAAGTTTTGTGCGACATTATTGATATGGATGTTTGTCATATTTTGTTTGGCCGACCTTGGCAATATGATGTGGATGTTACTTATAAAGGCAGGGACAATGTGATGTTGTTTATGTGGAATAACCATAAAATTGCTATGGCTCCTGTGTGTCAATTTGAGAAATCTGATGTGAAGAAAGGGGAGAGTTTCCTGACCTTATCTAGCAGTGAACTTGAGTTGGAGAGGGCCTTTAAAGAATATGAGGTTTTCTGTCCAGTGGTGATAAAGGGGTTGTTGTCTGCAGAAAAGGAAGAAGTAGTGATTCCCAAAGAAGTACAGGACATGTTGGGAGATTTTGGAGAGTTGATCTCGGATGAGTTGCCCAACGAGCTGCCACCTATGAGAGACATTCAACATCAGATTGATTTGGTGCCTGGAGCTAGCTTGCCCAATCTGCCACATTACCGAATGAGTCCCAAGGAGAATGAGATTTTGAGAGAGCAGATTGAAGACTTGTTGAAAAAAGGGTTCATTCGAGAGAGTATGAGTCCTTGTGCAGTTCCAGTCCTCCTTGTTCCTAAGAAGGGCAATCAATGGCGGATGTGTGTTGATAGCAGGGCCATTAACAAGATAACTGTGAAGTACAGGTTTCCTATTCCTCGTTTGGAAGACATGCTTGATGAGCTAGAAGGTTCCAAAGTGTTTACCAAGATAGACCTTCGAAGTGGATATCACCAGATTCGAATCAAGCCAGGGGATGAATGGAAGACAGCTTTTAAGAGCAAGGATGGCTTGTACAAGTGGATGGTTATGCCATTCGGGTTGTCTAATGCACCCAGCACTTTTATGAGGCTTATGAACCAGGTTCTTCGCCCTTTTACAGGTTCCTTTGTAGTAGTGTATTTTGATGATATACTGATCTATAGCAGGACCAAAGAAGAACATTTGGTGCATTTGAAGCAGGTTTTGGAAGCTTTACAGGAGAATAAACTGTACATCAACTTAAAAAAATGTACATTCTGCACCAGCAAGTTATTATTTCTGGGATTTGTGGTTGGAGAAGAAGGCATTCAGGTTGATGAAGAAAAGGTACGAGCAATAAGAGAATGGCCAGCTCCAAAAACAGTTTCTGAAGTGCGGAGTTTTCATGGTTTAGCTACTTTCTACAGAAGATTTGTGAAGAATTTCAGTACCATTACTGCCCCTATTACTGAATGTTTGAAGAAAGGCAAATTCCAATGGGGAGAGGAACAAGAGAAAAGTTTTGCTTTAATCAAGGAGAAACTTTGTACTGCACCAGTTCTTGCCCTTCCTAATTTTGACAAGATATTTGAGGTTGAATGTGATGATAGTGGCGTGGGAGTAGGTGCTGTGTTGTCACAAGAGAAGAAACCAGTAGCATTCTTTAGTGAAAAGCTGAGTGAAGCTCGTCAGAAGTGGAGTACTTATGACCAAGAATTTTATGCAGTGTTCCGGGCATTGAGGCAATGGGAGCACTACCTGATTCAGAGGGAGTTCGTACTATTCACCGACCACCAAGCCTTGAAGTACCTCAATAGCCAGAAAACTGTGAATAAAATGCATGCAAGGTGGGTGAGTTTTCTGCAGAAATTTCCTTTTGTGATTCAACATAAATCTGGTACTCTTAACCGGGTCGCAGATGCTTTGAGTAGGAGGGCGTCCTTGCTGGTCACTTTAGCTCAGGAGATTGTGGGGTTTGATCTCTTGAAGGAGTTGTATGAGGAAGATGTTGATTTCAAAGAGATTTGGGCCAAGTGCAGCAATAACAATGCAGTCGCAGATTTTTATGCGAATGGAGGAAATTGCTTGGTTTTGTTTCTATGTTTGCTTACATGTTTCTGGGATAAGTATTGGGGAATTGCTTGGGTTTGCTTTGCATGTGGGTTTCTTTGGGGTTGCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 Retrotrans_gag rve zf-CCHC zf-H2C2

Protein Analysis

1130

Amino Acids

130.33

Weight (kDa)

7.44

Isoelectric Point (pI)

47.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ty3_capsid PF19259 135 - 273 3.5e-07 Ty3 transposon capsid-like protein
Retrotrans_gag PF03732 147 - 245 5e-13 Retrotransposon gag protein
RVT_1 PF00078 681 - 840 4.5e-43 Reverse transcriptase (RNA-dependent DNA polymerase)
RT_RNaseH_2 PF17919 903 - 996 3.1e-29 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 928 - 1027 1.1e-31 RNase H-like domain found in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000291)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00860
fragaria_vesca FvH4_1g23712 FvH4_1g29809 FvH4_1g29810 FvH4_2g02661 FvH4_2g13451 FvH4_2g17921 FvH4_2g17922 FvH4_2g19251 FvH4_2g19252 FvH4_2g28221 FvH4_2g35961 FvH4_3g10372 FvH4_3g12461 FvH4_3g12461 FvH4_3g27861 FvH4_3g34591 FvH4_3g40201 FvH4_3g44612 FvH4_4g08352 FvH4_4g12251 FvH4_4g12742 FvH4_4g13904 FvH4_4g14287 FvH4_4g15243 FvH4_4g24071 FvH4_4g33448 FvH4_5g21912 FvH4_5g39371 FvH4_6g14992 FvH4_6g15221 FvH4_6g20603 FvH4_6g31093 FvH4_6g32372 FvH4_6g33012
malus_domestica MD11G1009100.v1.1 MD13G1145000.v1.1 MD16G1138700.v1.1
prunus_persica Prupe.5G246300_v2.0.a1 Prupe.7G034800_v2.0.a1 Prupe.8G084500_v2.0.a1
pyrus_communis pycom01g18240 pycom04g00330 pycom05g09010 pycom06g01670 pycom06g01690 pycom06g07180 pycom06g11620 pycom10g05720 pycom1134g00040 pycom1134g00060 pycom12486g00010 pycom12555g00230 pycom13g21670 pycom13g23130 pycom13g23140 pycom14g10580
rosa_chinensis RchiOBHm_Chr1g0330691 RchiOBHm_Chr2g0106171 RchiOBHm_Chr2g0134731 RchiOBHm_Chr2g0142791 RchiOBHm_Chr2g0149861 RchiOBHm_Chr3g0452401 RchiOBHm_Chr3g0461881 RchiOBHm_Chr4g0401341 RchiOBHm_Chr5g0075641 RchiOBHm_Chr6g0265961 RchiOBHm_Chr7g0200201 RchiOBHm_Chr7g0237811
rosa_laevigata RLG00000002773
rosa_multiflora Rmu_co8037806.1_g000001 Rmu_co8445989.1_g000001 Rmu_sc0000745.1_g000039 Rmu_sc0004448.1_g000029 Rmu_sc0004488.1_g000002 Rmu_sc0004591.1_g000018 Rmu_sc0005065.1_g000030 Rmu_sc0005150.1_g000005 Rmu_sc0005654.1_g000011 Rmu_sc0006986.1_g000016
rosa_roxburghii Rroxscaffold_164G00436490 Rroxscaffold_175G00432490 Rroxscaffold_1G00059440 Rroxscaffold_1G00064410 Rroxscaffold_2G00100310 Rroxscaffold_2G00128170 Rroxscaffold_3G00239420 Rroxscaffold_3G00264970 Rroxscaffold_3G00271550 Rroxscaffold_4G00300240 Rroxscaffold_5G00385050 Rroxscaffold_6G00399720
rosa_rugosa Rorug02G0252200
rosa_samantha Rh2DG251900 Rh7CG329900
rosa_wichuraiana Rw0G004800 Rw1G000850 Rw1G022350 Rw2G027030 Rw2G027760 Rw2G028410 Rw2G029130 Rw2G029390 Rw2G032490 Rw2G039460 Rw2G047800 Rw2G050340 Rw3G026430 Rw4G018370 Rw4G030750 Rw4G033140 Rw5G011950 Rw5G012010 Rw5G029280 Rw5G040190 Rw5G044570 Rw5G048240 Rw6G000340 Rw6G010140 Rw6G026480 Rw7G033750 Rw7G037250 Rw7G042080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1482, 1572
Acc36I ACCTGC 1 cut(s) 2419
AccB1I GGYRCC 2 cut(s) 1393, 1897
AccB7I CCANNNNNTGG 1 cut(s) 706
AccI GTMKAC 1 cut(s) 64
AccII CGCG 1 cut(s) 962
AciI CCGC 7 cut(s) 5, 93, 962, 1184, 1258, 2065, 2605
AcoI YGGCCR 3 cut(s) 777, 1537, 2576
AcsI RAATTY 8 cut(s) 126, 273, 330, 1336, 2650, 2699, 2924, 3077
AcuI CTGAAG 5 cut(s) 285, 368, 714, 749, 2619
AcvI CACGTG 1 cut(s) 227
AcyI GRCGYC 1 cut(s) 3146
AdeI CACNNNGTG 1 cut(s) 230
AfiI CCNNNNNNNGG 7 cut(s) 706, 956, 1204, 1410, 1411, 2051, 2348
AflIII ACRYGT 2 cut(s) 1809, 3320
AhlI ACTAGT 1 cut(s) 59
AjnI CCWGG 7 cut(s) 306, 446, 618, 1069, 1900, 2218, 2328
AjuI GAANNNNNNNTTGG 4 cut(s) 2417, 2449, 2578, 2610
Alw21I GWGCWC 1 cut(s) 2964
Alw26I GTCTC 2 cut(s) 1096, 1866
AlwNI CAGNNNCTG 2 cut(s) 257, 2597
Ama87I CYCGRG 1 cut(s) 1406
ApeKI GCWGC 8 cut(s) 379, 467, 910, 1255, 1329, 1381, 1858, 3246
ApoI RAATTY 8 cut(s) 126, 273, 330, 1336, 2650, 2699, 2924, 3077
ArsI GACNNNNNNTTYG 4 cut(s) 383, 415, 2780, 2812
AseI ATTAAT 1 cut(s) 1290
Asp700I GAANNNNTTC 2 cut(s) 2535, 2651
AspLEI GCGC 3 cut(s) 962, 1263, 1381
AspS9I GGNCC 6 cut(s) 7, 1424, 1713, 2085, 2397, 3237
AsuC2I CCSGG 2 cut(s) 2942, 3119
AsuHPI GGTGA 6 cut(s) 155, 242, 1759, 2192, 2986, 3073
AsuII TTCGAA 2 cut(s) 2188, 2209
AsuNHI GCTAGC 1 cut(s) 1907
AvaI CYCGRG 1 cut(s) 1406
AvaII GGWCC 2 cut(s) 1424, 2397
BalI TGGCCA 1 cut(s) 2578
BanI GGYRCC 2 cut(s) 1393, 1897
BanII GRGCYC 2 cut(s) 223, 1003
BarI GAAGNNNNNNTAC 4 cut(s) 261, 293, 2541, 2573
BauI CACGAG 1 cut(s) 828
BbrPI CACGTG 1 cut(s) 227
BbsI GAAGAC 3 cut(s) 1983, 2142, 2240
Bbv12I GWGCWC 1 cut(s) 2964
BbvI GCAGC 8 cut(s) 391, 454, 897, 1267, 1316, 1393, 1845, 3258
BccI CCATC 7 cut(s) 104, 188, 550, 1151, 1163, 2249, 2266
BceAI ACGGC 1 cut(s) 663
BcgI CGANNNNNNTGC 2 cut(s) 479, 513
BciT130I CCWGG 7 cut(s) 308, 448, 620, 1071, 1902, 2220, 2330
BciVI GTATCC 1 cut(s) 1474
BcnI CCSGG 2 cut(s) 2942, 3119
BcoDI GTCTC 2 cut(s) 1096, 1866
BcuI ACTAGT 1 cut(s) 59
BfaI CTAG 8 cut(s) 60, 627, 794, 981, 1032, 1689, 1908, 2153
BfmI CTRYAG 7 cut(s) 468, 911, 1038, 1767, 2389, 2632, 3071
BfuAI ACCTGC 1 cut(s) 2419
BfuI GTATCC 1 cut(s) 1474
BglII AGATCT 1 cut(s) 1079
BmcAI AGTACT 2 cut(s) 463, 2911
Bme1390I CCNGG 9 cut(s) 308, 448, 620, 1071, 1902, 2220, 2330, 2942, 3119
Bme18I GGWCC 2 cut(s) 1424, 2397
BmeT110I CYCGRG 1 cut(s) 1406
BmgT120I GGNCC 6 cut(s) 7, 1424, 1713, 2085, 2397, 3237
BmiI GGNNCC 6 cut(s) 222, 1395, 1629, 1899, 2161, 2353
BmrFI CCNGG 9 cut(s) 308, 448, 620, 1071, 1902, 2220, 2330, 2942, 3119
BmsI GCATC 2 cut(s) 1049, 3118
BmtI GCTAGC 1 cut(s) 1911
BpiI GAAGAC 3 cut(s) 1983, 2142, 2240
BplI GAGNNNNNCTC 4 cut(s) 1820, 1852, 2878, 2910
BpmI CTGGAG 2 cut(s) 469, 1923
Bpu10I CCTNAGC 1 cut(s) 3168
Bpu14I TTCGAA 2 cut(s) 2188, 2209
BpuEI CTTGAG 1 cut(s) 1721
BpuMI CCSGG 2 cut(s) 2942, 3119
Bsa29I ATCGAT 1 cut(s) 1057
BsaAI YACGTR 1 cut(s) 227
BsaBI GATNNNNATC 1 cut(s) 2210
BsaHI GRCGYC 1 cut(s) 3146
BsaJI CCNNGG 7 cut(s) 619, 894, 1070, 1405, 1544, 1944, 2219
Bsc4I CCNNNNNNNGG 7 cut(s) 706, 956, 1204, 1410, 1411, 2051, 2348
Bse118I RCCGGY 2 cut(s) 1375, 1459
Bse1I ACTGG 5 cut(s) 1359, 1742, 2030, 2765, 2861
Bse3DI GCAATG 1 cut(s) 2960
Bse8I GATNNNNATC 1 cut(s) 2210
BseBI CCWGG 7 cut(s) 308, 448, 620, 1071, 1902, 2220, 2330
BseCI ATCGAT 1 cut(s) 1057
BseDI CCNNGG 7 cut(s) 619, 894, 1070, 1405, 1544, 1944, 2219
BseGI GGATG 8 cut(s) 1141, 1522, 1567, 1846, 2073, 2230, 2260, 2277
BseJI GATNNNNATC 1 cut(s) 2210
BseLI CCNNNNNNNGG 7 cut(s) 706, 956, 1204, 1410, 1411, 2051, 2348
BseMI GCAATG 1 cut(s) 2960
BseMII CTCAG 7 cut(s) 249, 642, 1086, 1167, 1191, 2876, 3182
BseNI ACTGG 5 cut(s) 1359, 1742, 2030, 2765, 2861
BseRI GAGGAG 2 cut(s) 1114, 1202
BseXI GCAGC 8 cut(s) 391, 454, 897, 1267, 1316, 1393, 1845, 3258
BseYI CCCAGC 1 cut(s) 2303
BsgI GTGCAG 5 cut(s) 888, 2043, 2473, 2745, 3265
Bsh1236I CGCG 1 cut(s) 962
BshNI GGYRCC 2 cut(s) 1393, 1897
BshVI ATCGAT 1 cut(s) 1057
BsiHKAI GWGCWC 1 cut(s) 2964
BsiHKCI CYCGRG 1 cut(s) 1406
BsiSI CCGG 4 cut(s) 1376, 1460, 2941, 3118
BslFI GGGAC 2 cut(s) 1595, 1926
BslI CCNNNNNNNGG 7 cut(s) 706, 956, 1204, 1410, 1411, 2051, 2348
BsmAI GTCTC 2 cut(s) 1096, 1866
BsmFI GGGAC 2 cut(s) 1595, 1926
BsmI GAATGC 2 cut(s) 2535, 2867
BsoBI CYCGRG 1 cut(s) 1406
Bsp119I TTCGAA 2 cut(s) 2188, 2209
Bsp1286I GDGCHC 3 cut(s) 223, 1003, 2964
Bsp1407I TGTACA 3 cut(s) 2262, 2460, 2480
Bsp143I GATC 5 cut(s) 28, 1079, 1833, 2385, 3187
BspACI CCGC 7 cut(s) 5, 93, 962, 1184, 1258, 2065, 2605
BspCNI CTCAG 7 cut(s) 250, 643, 1087, 1168, 1192, 2877, 3181
BspDI ATCGAT 1 cut(s) 1057
BspFNI CGCG 1 cut(s) 962
BspHI TCATGA 1 cut(s) 1387
BspLI GGNNCC 6 cut(s) 222, 1395, 1629, 1899, 2161, 2353
BspMAI CTGCAG 4 cut(s) 472, 915, 1771, 3075
BspMI ACCTGC 1 cut(s) 2419
BspOI GCTAGC 1 cut(s) 1911
BspT104I TTCGAA 2 cut(s) 2188, 2209
BspT107I GGYRCC 2 cut(s) 1393, 1897
BsrDI GCAATG 1 cut(s) 2960
BsrFI RCCGGY 2 cut(s) 1375, 1459
BsrGI TGTACA 3 cut(s) 2262, 2460, 2480
BsrI ACTGG 5 cut(s) 1359, 1742, 2030, 2765, 2861
BssAI RCCGGY 2 cut(s) 1375, 1459
BssECI CCNNGG 7 cut(s) 619, 894, 1070, 1405, 1544, 1944, 2219
BssMI GATC 5 cut(s) 28, 1079, 1833, 2385, 3187
BssNI GRCGYC 1 cut(s) 3146
BssSI CACGAG 1 cut(s) 828
BssT1I CCWWGG 3 cut(s) 894, 1544, 1944
Bst2BI CACGAG 1 cut(s) 828
Bst2UI CCWGG 7 cut(s) 308, 448, 620, 1071, 1902, 2220, 2330
Bst4CI ACNGT 7 cut(s) 24, 634, 766, 2104, 2460, 2593, 3037
Bst6I CTCTTC 2 cut(s) 452, 1242
BstACI GRCGYC 1 cut(s) 3146
BstAUI TGTACA 3 cut(s) 2262, 2460, 2480
BstBAI YACGTR 1 cut(s) 227
BstBI TTCGAA 2 cut(s) 2188, 2209
BstC8I GCNNGC 8 cut(s) 209, 712, 964, 1377, 1909, 1913, 2580, 3051
BstDEI CTNAG 8 cut(s) 258, 651, 1095, 1176, 1200, 2046, 2885, 3168
BstENI CCTNNNNNAGG 2 cut(s) 954, 2346
BstF5I GGATG 8 cut(s) 1141, 1522, 1567, 1846, 2073, 2230, 2260, 2277
BstFNI CGCG 1 cut(s) 962
BstHHI GCGC 3 cut(s) 962, 1263, 1381
BstKTI GATC 5 cut(s) 31, 1082, 1836, 2388, 3190
BstMAI GTCTC 2 cut(s) 1096, 1866
BstMBI GATC 5 cut(s) 28, 1079, 1833, 2385, 3187
BstNI CCWGG 7 cut(s) 308, 448, 620, 1071, 1902, 2220, 2330
BstNSI RCATGY 6 cut(s) 443, 1813, 2143, 3053, 3324, 3369
BstSCI CCNGG 9 cut(s) 306, 446, 618, 1069, 1900, 2218, 2328, 2940, 3117
BstSFI CTRYAG 7 cut(s) 468, 911, 1038, 1767, 2389, 2632, 3071
BstUI CGCG 1 cut(s) 962
BstV1I GCAGC 8 cut(s) 391, 454, 897, 1267, 1316, 1393, 1845, 3258
BstV2I GAAGAC 3 cut(s) 1983, 2142, 2240
BstX2I RGATCY 1 cut(s) 1079
BstXI CCANNNNNNTGG 1 cut(s) 1354
BstYI RGATCY 1 cut(s) 1079
Bsu15I ATCGAT 1 cut(s) 1057
BsuI GTATCC 1 cut(s) 1474
BsuTUI ATCGAT 1 cut(s) 1057
BtsCI GGATG 8 cut(s) 1141, 1522, 1567, 1846, 2073, 2230, 2260, 2277
BtsI GCAGTG 2 cut(s) 1699, 2940
BtsIMutI CAGTG 4 cut(s) 727, 1699, 1749, 2940
BveI ACCTGC 1 cut(s) 2419
Cac8I GCNNGC 8 cut(s) 209, 712, 964, 1377, 1909, 1913, 2580, 3051
CaiI CAGNNNCTG 2 cut(s) 257, 2597
CciI TCATGA 1 cut(s) 1387
CfoI GCGC 3 cut(s) 962, 1263, 1381
Cfr10I RCCGGY 2 cut(s) 1375, 1459
Cfr13I GGNCC 6 cut(s) 7, 1424, 1713, 2085, 2397, 3237
ClaI ATCGAT 1 cut(s) 1057
CseI GACGC 1 cut(s) 3135
CsiI ACCWGGT 1 cut(s) 2328
CspCI CAANNNNNGTGG 2 cut(s) 964, 999
DdeI CTNAG 8 cut(s) 258, 651, 1095, 1176, 1200, 2046, 2885, 3168
DpnI GATC 5 cut(s) 30, 1081, 1835, 2387, 3189
DpnII GATC 5 cut(s) 28, 1079, 1833, 2385, 3187
DraI TTTAAA 3 cut(s) 934, 955, 1720
DraIII CACNNNGTG 1 cut(s) 230
EaeI YGGCCR 3 cut(s) 777, 1537, 2576
Eam1104I CTCTTC 2 cut(s) 452, 1242
EarI CTCTTC 2 cut(s) 452, 1242
EciI GGCGGA 1 cut(s) 2080
Eco130I CCWWGG 3 cut(s) 894, 1544, 1944
Eco24I GRGCYC 2 cut(s) 223, 1003
Eco32I GATATC 1 cut(s) 2198
Eco47I GGWCC 2 cut(s) 1424, 2397
Eco57I CTGAAG 5 cut(s) 285, 368, 714, 749, 2619
Eco72I CACGTG 1 cut(s) 227
Eco88I CYCGRG 1 cut(s) 1406
EcoNI CCTNNNNNAGG 2 cut(s) 954, 2346
EcoO109I RGGNCCY 1 cut(s) 1713
EcoRII CCWGG 7 cut(s) 306, 446, 618, 1069, 1900, 2218, 2328
EcoRV GATATC 1 cut(s) 2198
EcoT14I CCWWGG 3 cut(s) 894, 1544, 1944
EcoT22I ATGCAT 1 cut(s) 3051
EcoT38I GRGCYC 2 cut(s) 223, 1003
ErhI CCWWGG 3 cut(s) 894, 1544, 1944
FalI AAGNNNNNCTT 6 cut(s) 2127, 2159, 2243, 2275, 2719, 2751
FaqI GGGAC 2 cut(s) 1595, 1926
FauI CCCGC 2 cut(s) 100, 955
FblI GTMKAC 1 cut(s) 64
FokI GGATG 8 cut(s) 1148, 1529, 1574, 1853, 2080, 2237, 2267, 2284
FriOI GRGCYC 2 cut(s) 223, 1003
FspBI CTAG 8 cut(s) 60, 627, 794, 981, 1032, 1689, 1908, 2153
GlaI GCGC 3 cut(s) 961, 1262, 1380
GsaI CCCAGC 1 cut(s) 2307
GsuI CTGGAG 2 cut(s) 469, 1923
HapII CCGG 4 cut(s) 1376, 1460, 2941, 3118
HgaI GACGC 1 cut(s) 3135
HhaI GCGC 3 cut(s) 962, 1263, 1381
Hin1I GRCGYC 1 cut(s) 3146
Hin6I GCGC 3 cut(s) 960, 1261, 1379
HinP1I GCGC 3 cut(s) 960, 1261, 1379
HincII GTYRAC 1 cut(s) 1210
HindII GTYRAC 1 cut(s) 1210
HindIII AAGCTT 2 cut(s) 936, 2439
HpaI GTTAAC 1 cut(s) 1210
HpaII CCGG 4 cut(s) 1376, 1460, 2941, 3118
HphI GGTGA 6 cut(s) 155, 242, 1759, 2192, 2986, 3073
Hpy166II GTNNAC 8 cut(s) 65, 82, 88, 391, 1210, 1427, 1697, 2172
Hpy8I GTNNAC 8 cut(s) 65, 82, 88, 391, 1210, 1427, 1697, 2172
HpyCH4III ACNGT 7 cut(s) 24, 634, 766, 2104, 2460, 2593, 3037
HpyCH4IV ACGT 2 cut(s) 84, 226
HpyF3I CTNAG 8 cut(s) 258, 651, 1095, 1176, 1200, 2046, 2885, 3168
HpySE526I ACGT 2 cut(s) 84, 226
Hsp92I GRCGYC 1 cut(s) 3146
HspAI GCGC 3 cut(s) 960, 1261, 1379
KroI GCCGGC 1 cut(s) 1375
KroNI GCCGGC 1 cut(s) 1377
KspAI GTTAAC 1 cut(s) 1210
Kzo9I GATC 5 cut(s) 28, 1079, 1833, 2385, 3187
LmnI GCTCC 7 cut(s) 226, 1172, 1326, 1633, 1904, 2587, 2959
Lsp1109I GCAGC 8 cut(s) 391, 454, 897, 1267, 1316, 1393, 1845, 3258
LweI GCATC 2 cut(s) 1049, 3118
MabI ACCWGGT 1 cut(s) 2328
MaeI CTAG 8 cut(s) 60, 627, 794, 981, 1032, 1689, 1908, 2153
MaeII ACGT 2 cut(s) 84, 226
MaeIII GTNAC 7 cut(s) 55, 756, 784, 1275, 1564, 2844, 3157
MalI GATC 5 cut(s) 30, 1081, 1835, 2387, 3189
MboI GATC 5 cut(s) 28, 1079, 1833, 2385, 3187
MflI RGATCY 1 cut(s) 1079
MhlI GDGCHC 3 cut(s) 223, 1003, 2964
MlsI TGGCCA 1 cut(s) 2578
MluNI TGGCCA 1 cut(s) 2578
MlyI GAGTC 2 cut(s) 1948, 2023
MmeI TCCRAC 3 cut(s) 795, 1686, 2503
Mox20I TGGCCA 1 cut(s) 2578
Mph1103I ATGCAT 1 cut(s) 3051
MroNI GCCGGC 1 cut(s) 1375
MroXI GAANNNNTTC 2 cut(s) 2535, 2651
MscI TGGCCA 1 cut(s) 2578
MslI CAYNNNNRTG 1 cut(s) 2312
Msp20I TGGCCA 1 cut(s) 2578
MspA1I CMGCKG 1 cut(s) 1258
MspI CCGG 4 cut(s) 1376, 1460, 2941, 3118
MspR9I CCNGG 9 cut(s) 308, 448, 620, 1071, 1902, 2220, 2330, 2942, 3119
Mva1269I GAATGC 2 cut(s) 2535, 2867
MvaI CCWGG 7 cut(s) 308, 448, 620, 1071, 1902, 2220, 2330
MvnI CGCG 1 cut(s) 962
NaeI GCCGGC 1 cut(s) 1377
NciI CCSGG 2 cut(s) 2942, 3119
NdeII GATC 5 cut(s) 28, 1079, 1833, 2385, 3187
NgoMIV GCCGGC 1 cut(s) 1375
NheI GCTAGC 1 cut(s) 1907
NlaIV GGNNCC 6 cut(s) 222, 1395, 1629, 1899, 2161, 2353
NmuCI GTSAC 5 cut(s) 55, 784, 1275, 2844, 3157
NsiI ATGCAT 1 cut(s) 3051
NspI RCATGY 6 cut(s) 443, 1813, 2143, 3053, 3324, 3369
NspV TTCGAA 2 cut(s) 2188, 2209
PaeI GCATGC 1 cut(s) 3053
PagI TCATGA 1 cut(s) 1387
PciI ACATGT 2 cut(s) 1809, 3320
PctI GAATGC 2 cut(s) 2535, 2867
PdiI GCCGGC 1 cut(s) 1377
PdmI GAANNNNTTC 2 cut(s) 2535, 2651
PflMI CCANNNNNTGG 1 cut(s) 706
PleI GAGTC 2 cut(s) 1947, 2022
PmaCI CACGTG 1 cut(s) 227
PmlI CACGTG 1 cut(s) 227
PpsI GAGTC 2 cut(s) 1947, 2022
Ppu21I YACGTR 1 cut(s) 227
PscI ACATGT 2 cut(s) 1809, 3320
PshBI ATTAAT 1 cut(s) 1290
PsiI TTATAA 2 cut(s) 1482, 1572
Psp6I CCWGG 7 cut(s) 306, 446, 618, 1069, 1900, 2218, 2328
PspCI CACGTG 1 cut(s) 227
PspFI CCCAGC 1 cut(s) 2303
PspGI CCWGG 7 cut(s) 306, 446, 618, 1069, 1900, 2218, 2328
PspN4I GGNNCC 6 cut(s) 222, 1395, 1629, 1899, 2161, 2353
PspPI GGNCC 6 cut(s) 7, 1424, 1713, 2085, 2397, 3237
PstI CTGCAG 4 cut(s) 472, 915, 1771, 3075
PstNI CAGNNNCTG 2 cut(s) 257, 2597
PsuI RGATCY 1 cut(s) 1079
RseI CAYNNNNRTG 1 cut(s) 2312
Sau3AI GATC 5 cut(s) 28, 1079, 1833, 2385, 3187
Sau96I GGNCC 6 cut(s) 7, 1424, 1713, 2085, 2397, 3237
ScaI AGTACT 2 cut(s) 463, 2911
SchI GAGTC 2 cut(s) 1948, 2023
ScrFI CCNGG 9 cut(s) 308, 448, 620, 1071, 1902, 2220, 2330, 2942, 3119
SduI GDGCHC 3 cut(s) 223, 1003, 2964
SexAI ACCWGGT 1 cut(s) 2328
SfaNI GCATC 2 cut(s) 1049, 3118
SfcI CTRYAG 7 cut(s) 468, 911, 1038, 1767, 2389, 2632, 3071
SfuI TTCGAA 2 cut(s) 2188, 2209
SinI GGWCC 2 cut(s) 1424, 2397
SmiMI CAYNNNNRTG 1 cut(s) 2312
SmlI CTYRAG 1 cut(s) 1700
SmoI CTYRAG 1 cut(s) 1700
SpeI ACTAGT 1 cut(s) 59
SphI GCATGC 1 cut(s) 3053
SsiI CCGC 7 cut(s) 5, 93, 962, 1184, 1258, 2065, 2605
SspI AATATT 1 cut(s) 1267
SspMI CTAG 8 cut(s) 60, 627, 794, 981, 1032, 1689, 1908, 2153
StyD4I CCNGG 9 cut(s) 306, 446, 618, 1069, 1900, 2218, 2328, 2940, 3117
StyI CCWWGG 3 cut(s) 894, 1544, 1944
TaaI ACNGT 7 cut(s) 24, 634, 766, 2104, 2460, 2593, 3037
TaiI ACGT 2 cut(s) 87, 229
TaqI TCGA 6 cut(s) 499, 1057, 1435, 2002, 2188, 2209
TatI WGTACW 8 cut(s) 461, 1801, 2109, 2262, 2460, 2480, 2756, 2909
TauI GCSGC 2 cut(s) 8, 1261
TscAI CASTG 4 cut(s) 727, 1699, 1749, 2940
TseFI GTSAC 5 cut(s) 55, 784, 1275, 2844, 3157
TseI GCWGC 8 cut(s) 379, 467, 910, 1255, 1329, 1381, 1858, 3246
Tsp45I GTSAC 5 cut(s) 55, 784, 1275, 2844, 3157
TspRI CASTG 4 cut(s) 727, 1699, 1749, 2940
Van91I CCANNNNNTGG 1 cut(s) 706
VpaK11BI GGWCC 2 cut(s) 1424, 2397
VspI ATTAAT 1 cut(s) 1290
XagI CCTNNNNNAGG 2 cut(s) 954, 2346
XapI RAATTY 8 cut(s) 126, 273, 330, 1336, 2650, 2699, 2924, 3077
XceI RCATGY 6 cut(s) 443, 1813, 2143, 3053, 3324, 3369
XcmI CCANNNNNNNNNTGG 2 cut(s) 1354, 2226
XmiI GTMKAC 1 cut(s) 64
XmnI GAANNNNTTC 2 cut(s) 2535, 2651
XspI CTAG 8 cut(s) 60, 627, 794, 981, 1032, 1689, 1908, 2153
ZrmI AGTACT 2 cut(s) 463, 2911
Zsp2I ATGCAT 1 cut(s) 3051
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.