pycom13g21670

Retroviral aspartyl protease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0000291
Physical Location & Seq
Reverse (-)
18604404 .. 18604880
477 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g21670.1

Sequence Viewer

Length: 477 bp
ATGGAGTTTCAAGTTGGATCCCAGCAATTTAAATTGACTCATTGTGCACCTTCACAGTCTCCCATACAAGATATTTCGGTGCATCACATCAGTAAAGGGTGCTCCACTTCAAACTTGGGATTATTATTATTATATTCTTTGGAAGTTGAAACAAGTGACACATTTGAGCTCACTCCTTCCCAATACAATGAACTGCACACGGTTTTGAACAAATTTGAGGTGGTTTTATTATTCCTTCCACATTACCTCCCTCACGGACCTACGACCATAGGATTCCATTGCTTCCAGGAGCAAAACCCCCCAATATCCGGCCTTATCATTATGGACCTTTACAAAAAGCTGAAATTGAAAAAGCAGTCCAGGAATTGCTACACTCGGGTTTTATCAGACCTAGCCGTAGTCCTTTTTCCTTTCCCGTTTTATTGGTTAAGAAGAAGGAAGACACTTGGAGATTATGTATGGATTACAGGGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag

Protein Analysis

159

Amino Acids

18.18

Weight (kDa)

8.35

Isoelectric Point (pI)

51.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000291)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00860
fragaria_vesca FvH4_1g23712 FvH4_1g29809 FvH4_1g29810 FvH4_2g02661 FvH4_2g13451 FvH4_2g17921 FvH4_2g17922 FvH4_2g19251 FvH4_2g19252 FvH4_2g28221 FvH4_2g35961 FvH4_3g10372 FvH4_3g12461 FvH4_3g12461 FvH4_3g27861 FvH4_3g34591 FvH4_3g40201 FvH4_3g44612 FvH4_4g08352 FvH4_4g12251 FvH4_4g12742 FvH4_4g13904 FvH4_4g14287 FvH4_4g15243 FvH4_4g24071 FvH4_4g33448 FvH4_5g21912 FvH4_5g39371 FvH4_6g14992 FvH4_6g15221 FvH4_6g20603 FvH4_6g31093 FvH4_6g32372 FvH4_6g33012
malus_domestica MD11G1009100.v1.1 MD13G1145000.v1.1 MD16G1138700.v1.1
prunus_persica Prupe.5G246300_v2.0.a1 Prupe.7G034800_v2.0.a1 Prupe.8G084500_v2.0.a1
pyrus_communis pycom01g18240 pycom04g00330 pycom05g09010 pycom06g01670 pycom06g01690 pycom06g07180 pycom06g11620 pycom10g05720 pycom1134g00040 pycom1134g00060 pycom12486g00010 pycom12555g00230 pycom13g21670 pycom13g23130 pycom13g23140 pycom14g10580
rosa_chinensis RchiOBHm_Chr1g0330691 RchiOBHm_Chr2g0106171 RchiOBHm_Chr2g0134731 RchiOBHm_Chr2g0142791 RchiOBHm_Chr2g0149861 RchiOBHm_Chr3g0452401 RchiOBHm_Chr3g0461881 RchiOBHm_Chr4g0401341 RchiOBHm_Chr5g0075641 RchiOBHm_Chr6g0265961 RchiOBHm_Chr7g0200201 RchiOBHm_Chr7g0237811
rosa_laevigata RLG00000002773
rosa_multiflora Rmu_co8037806.1_g000001 Rmu_co8445989.1_g000001 Rmu_sc0000745.1_g000039 Rmu_sc0004448.1_g000029 Rmu_sc0004488.1_g000002 Rmu_sc0004591.1_g000018 Rmu_sc0005065.1_g000030 Rmu_sc0005150.1_g000005 Rmu_sc0005654.1_g000011 Rmu_sc0006986.1_g000016
rosa_roxburghii Rroxscaffold_164G00436490 Rroxscaffold_175G00432490 Rroxscaffold_1G00059440 Rroxscaffold_1G00064410 Rroxscaffold_2G00100310 Rroxscaffold_2G00128170 Rroxscaffold_3G00239420 Rroxscaffold_3G00264970 Rroxscaffold_3G00271550 Rroxscaffold_4G00300240 Rroxscaffold_5G00385050 Rroxscaffold_6G00399720
rosa_rugosa Rorug02G0252200
rosa_samantha Rh2DG251900 Rh7CG329900
rosa_wichuraiana Rw0G004800 Rw1G000850 Rw1G022350 Rw2G027030 Rw2G027760 Rw2G028410 Rw2G029130 Rw2G029390 Rw2G032490 Rw2G039460 Rw2G047800 Rw2G050340 Rw3G026430 Rw4G018370 Rw4G030750 Rw4G033140 Rw5G011950 Rw5G012010 Rw5G029280 Rw5G040190 Rw5G044570 Rw5G048240 Rw6G000340 Rw6G010140 Rw6G026480 Rw7G033750 Rw7G037250 Rw7G042080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 12, 25
AcsI RAATTY 1 cut(s) 212
AfiI CCNNNNNNNGG 1 cut(s) 308
AgsI TTSAA 5 cut(s) 11, 111, 149, 208, 349
AjnI CCWGG 2 cut(s) 285, 359
AluBI AGCT 2 cut(s) 169, 340
AluI AGCT 2 cut(s) 169, 340
Alw21I GWGCWC 3 cut(s) 49, 104, 171
Alw26I GTCTC 1 cut(s) 63
Alw44I GTGCAC 1 cut(s) 45
AlwI GGATC 2 cut(s) 12, 25
Ama87I CYCGRG 1 cut(s) 375
AoxI GGCC 1 cut(s) 310
ApaLI GTGCAC 1 cut(s) 45
ApoI RAATTY 1 cut(s) 212
AspS9I GGNCC 2 cut(s) 257, 325
AvaI CYCGRG 1 cut(s) 375
AvaII GGWCC 2 cut(s) 257, 325
BaeGI GKGCMC 1 cut(s) 49
BamHI GGATCC 1 cut(s) 17
BanII GRGCYC 1 cut(s) 171
BbsI GAAGAC 1 cut(s) 446
Bbv12I GWGCWC 3 cut(s) 49, 104, 171
BceAI ACGGC 1 cut(s) 380
BciT130I CCWGG 2 cut(s) 287, 361
BcoDI GTCTC 1 cut(s) 63
BfaI CTAG 1 cut(s) 392
Bme1390I CCNGG 2 cut(s) 287, 361
Bme18I GGWCC 2 cut(s) 257, 325
BmeT110I CYCGRG 1 cut(s) 375
BmgT120I GGNCC 2 cut(s) 257, 325
BmiI GGNNCC 1 cut(s) 19
BmrFI CCNGG 2 cut(s) 287, 361
BmsI GCATC 1 cut(s) 91
BpiI GAAGAC 1 cut(s) 446
BsaXI ACNNNNNCTCC 4 cut(s) 231, 261, 441, 471
Bsc4I CCNNNNNNNGG 1 cut(s) 308
Bse3DI GCAATG 1 cut(s) 277
BseBI CCWGG 2 cut(s) 287, 361
BseLI CCNNNNNNNGG 1 cut(s) 308
BseMI GCAATG 1 cut(s) 277
BseSI GKGCMC 1 cut(s) 49
BseYI CCCAGC 1 cut(s) 21
BsgI GTGCAG 1 cut(s) 179
BshFI GGCC 1 cut(s) 312
BsiHKAI GWGCWC 3 cut(s) 49, 104, 171
BsiHKCI CYCGRG 1 cut(s) 375
BsiSI CCGG 1 cut(s) 309
BslI CCNNNNNNNGG 1 cut(s) 308
BsmAI GTCTC 1 cut(s) 63
BsnI GGCC 1 cut(s) 312
BsoBI CYCGRG 1 cut(s) 375
Bsp1286I GDGCHC 3 cut(s) 49, 104, 171
Bsp143I GATC 1 cut(s) 17
BspANI GGCC 1 cut(s) 312
BspLI GGNNCC 1 cut(s) 19
BspPI GGATC 2 cut(s) 12, 25
BsrDI GCAATG 1 cut(s) 277
BssMI GATC 1 cut(s) 17
Bst2UI CCWGG 2 cut(s) 287, 361
Bst4CI ACNGT 2 cut(s) 57, 202
BstKTI GATC 1 cut(s) 20
BstMAI GTCTC 1 cut(s) 63
BstMBI GATC 1 cut(s) 17
BstNI CCWGG 2 cut(s) 287, 361
BstSCI CCNGG 2 cut(s) 285, 359
BstSLI GKGCMC 1 cut(s) 49
BstV2I GAAGAC 1 cut(s) 446
BstX2I RGATCY 1 cut(s) 17
BstYI RGATCY 1 cut(s) 17
BsuRI GGCC 1 cut(s) 312
Cfr13I GGNCC 2 cut(s) 257, 325
CviJI RGCY 4 cut(s) 169, 312, 340, 395
CviKI_1 RGCY 4 cut(s) 169, 312, 340, 395
DpnI GATC 1 cut(s) 19
DpnII GATC 1 cut(s) 17
DraI TTTAAA 1 cut(s) 31
Ecl136II GAGCTC 1 cut(s) 169
Eco24I GRGCYC 1 cut(s) 171
Eco47I GGWCC 2 cut(s) 257, 325
Eco53kI GAGCTC 1 cut(s) 169
Eco88I CYCGRG 1 cut(s) 375
EcoICRI GAGCTC 1 cut(s) 169
EcoRII CCWGG 2 cut(s) 285, 359
EcoT38I GRGCYC 1 cut(s) 171
FaiI YATR 6 cut(s) 65, 133, 269, 323, 456, 460
FriOI GRGCYC 1 cut(s) 171
FspBI CTAG 1 cut(s) 392
GsaI CCCAGC 1 cut(s) 25
HaeIII GGCC 1 cut(s) 312
HapII CCGG 1 cut(s) 309
HinfI GANTC 2 cut(s) 37, 273
HpaII CCGG 1 cut(s) 309
Hpy166II GTNNAC 1 cut(s) 47
Hpy188I TCNGA 1 cut(s) 388
Hpy8I GTNNAC 1 cut(s) 47
HpyAV CCTTC 4 cut(s) 60, 186, 245, 429
HpyCH4III ACNGT 2 cut(s) 57, 202
HpyCH4V TGCA 3 cut(s) 47, 82, 196
Kzo9I GATC 1 cut(s) 17
LmnI GCTCC 2 cut(s) 107, 289
LpnPI CCDG 7 cut(s) 35, 272, 299, 322, 346, 373, 453
LweI GCATC 1 cut(s) 91
MaeI CTAG 1 cut(s) 392
MaeIII GTNAC 1 cut(s) 155
MalI GATC 1 cut(s) 19
MboI GATC 1 cut(s) 17
MboII GAAGA 2 cut(s) 444, 451
MflI RGATCY 1 cut(s) 17
MhlI GDGCHC 3 cut(s) 49, 104, 171
MluCI AATT 5 cut(s) 26, 32, 212, 344, 364
MlyI GAGTC 1 cut(s) 31
MnlI CCTC 3 cut(s) 211, 257, 261
MseI TTAA 2 cut(s) 30, 428
MspI CCGG 1 cut(s) 309
MspR9I CCNGG 2 cut(s) 287, 361
MvaI CCWGG 2 cut(s) 287, 361
NdeII GATC 1 cut(s) 17
NlaIV GGNNCC 1 cut(s) 19
NmuCI GTSAC 1 cut(s) 155
PfeI GAWTC 1 cut(s) 273
PfoI TCCNGGA 2 cut(s) 285, 359
PleI GAGTC 1 cut(s) 31
PpsI GAGTC 1 cut(s) 31
Psp124BI GAGCTC 1 cut(s) 171
Psp6I CCWGG 2 cut(s) 285, 359
PspFI CCCAGC 1 cut(s) 21
PspGI CCWGG 2 cut(s) 285, 359
PspN4I GGNNCC 1 cut(s) 19
PspPI GGNCC 2 cut(s) 257, 325
PsuI RGATCY 1 cut(s) 17
SacI GAGCTC 1 cut(s) 171
SaqAI TTAA 2 cut(s) 30, 428
Sau3AI GATC 1 cut(s) 17
Sau96I GGNCC 2 cut(s) 257, 325
SchI GAGTC 1 cut(s) 31
ScrFI CCNGG 2 cut(s) 287, 361
SduI GDGCHC 3 cut(s) 49, 104, 171
SetI ASST 8 cut(s) 52, 171, 222, 249, 262, 330, 342, 393
SfaNI GCATC 1 cut(s) 91
SinI GGWCC 2 cut(s) 257, 325
SmiI ATTTAAAT 1 cut(s) 31
Sse9I AATT 5 cut(s) 26, 32, 212, 344, 364
SspMI CTAG 1 cut(s) 392
SstI GAGCTC 1 cut(s) 171
StyD4I CCNGG 2 cut(s) 285, 359
SwaI ATTTAAAT 1 cut(s) 31
TaaI ACNGT 2 cut(s) 57, 202
TasI AATT 5 cut(s) 26, 32, 212, 344, 364
TfiI GAWTC 1 cut(s) 273
Tru1I TTAA 2 cut(s) 30, 428
Tru9I TTAA 2 cut(s) 30, 428
TseFI GTSAC 1 cut(s) 155
Tsp45I GTSAC 1 cut(s) 155
TspDTI ATGAA 1 cut(s) 204
TspGWI ACGGA 1 cut(s) 270
VneI GTGCAC 1 cut(s) 45
VpaK11BI GGWCC 2 cut(s) 257, 325
XapI RAATTY 1 cut(s) 212
XcmI CCANNNNNNNNNTGG 1 cut(s) 112
XspI CTAG 1 cut(s) 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.