pycom13g23130

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0000291
Physical Location & Seq
Forward (+)
20819449 .. 20819775
327 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g23130.1

Sequence Viewer

Length: 327 bp
ATGGATTTCATCACACATTTGCCCAAGTCTGATGGATGTGGATCTATCTTCGTCGTGGTCGATAGATTCACCAAGTATGCCACTTTCATACCCGCACCTGTGGAGTGCACAGCTGAAGTAGCTGCACGCTTGTTTCTAAAGCACGTGGTGAAGTATTGGGGTGTTCCGAGGAGCATAGTCAGTGATCGAGATGCTCGCTTCACGGGTAGATTTTGGAAGGAGCTCTTCAAGCTACTTGGCTCAAAATTAGACTTTTCCACCGCTTTTCATCCCCAAACTGATGGACAAACGGAGCGGGTTAATGCATTGTTAGAGACTTATTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease_2 Chromo RVP_2 RVT_1 Retrotrans_gag gag-asp_proteas rve

Protein Analysis

109

Amino Acids

12.32

Weight (kDa)

8.64

Isoelectric Point (pI)

23.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
rve PF00665 1 - 91 1.3e-08 Integrase core domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000291)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00860
fragaria_vesca FvH4_1g23712 FvH4_1g29809 FvH4_1g29810 FvH4_2g02661 FvH4_2g13451 FvH4_2g17921 FvH4_2g17922 FvH4_2g19251 FvH4_2g19252 FvH4_2g28221 FvH4_2g35961 FvH4_3g10372 FvH4_3g12461 FvH4_3g12461 FvH4_3g27861 FvH4_3g34591 FvH4_3g40201 FvH4_3g44612 FvH4_4g08352 FvH4_4g12251 FvH4_4g12742 FvH4_4g13904 FvH4_4g14287 FvH4_4g15243 FvH4_4g24071 FvH4_4g33448 FvH4_5g21912 FvH4_5g39371 FvH4_6g14992 FvH4_6g15221 FvH4_6g20603 FvH4_6g31093 FvH4_6g32372 FvH4_6g33012
malus_domestica MD11G1009100.v1.1 MD13G1145000.v1.1 MD16G1138700.v1.1
prunus_persica Prupe.5G246300_v2.0.a1 Prupe.7G034800_v2.0.a1 Prupe.8G084500_v2.0.a1
pyrus_communis pycom01g18240 pycom04g00330 pycom05g09010 pycom06g01670 pycom06g01690 pycom06g07180 pycom06g11620 pycom10g05720 pycom1134g00040 pycom1134g00060 pycom12486g00010 pycom12555g00230 pycom13g21670 pycom13g23130 pycom13g23140 pycom14g10580
rosa_chinensis RchiOBHm_Chr1g0330691 RchiOBHm_Chr2g0106171 RchiOBHm_Chr2g0134731 RchiOBHm_Chr2g0142791 RchiOBHm_Chr2g0149861 RchiOBHm_Chr3g0452401 RchiOBHm_Chr3g0461881 RchiOBHm_Chr4g0401341 RchiOBHm_Chr5g0075641 RchiOBHm_Chr6g0265961 RchiOBHm_Chr7g0200201 RchiOBHm_Chr7g0237811
rosa_laevigata RLG00000002773
rosa_multiflora Rmu_co8037806.1_g000001 Rmu_co8445989.1_g000001 Rmu_sc0000745.1_g000039 Rmu_sc0004448.1_g000029 Rmu_sc0004488.1_g000002 Rmu_sc0004591.1_g000018 Rmu_sc0005065.1_g000030 Rmu_sc0005150.1_g000005 Rmu_sc0005654.1_g000011 Rmu_sc0006986.1_g000016
rosa_roxburghii Rroxscaffold_164G00436490 Rroxscaffold_175G00432490 Rroxscaffold_1G00059440 Rroxscaffold_1G00064410 Rroxscaffold_2G00100310 Rroxscaffold_2G00128170 Rroxscaffold_3G00239420 Rroxscaffold_3G00264970 Rroxscaffold_3G00271550 Rroxscaffold_4G00300240 Rroxscaffold_5G00385050 Rroxscaffold_6G00399720
rosa_rugosa Rorug02G0252200
rosa_samantha Rh2DG251900 Rh7CG329900
rosa_wichuraiana Rw0G004800 Rw1G000850 Rw1G022350 Rw2G027030 Rw2G027760 Rw2G028410 Rw2G029130 Rw2G029390 Rw2G032490 Rw2G039460 Rw2G047800 Rw2G050340 Rw3G026430 Rw4G018370 Rw4G030750 Rw4G033140 Rw5G011950 Rw5G012010 Rw5G029280 Rw5G040190 Rw5G044570 Rw5G048240 Rw6G000340 Rw6G010140 Rw6G026480 Rw7G033750 Rw7G037250 Rw7G042080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 295
AciI CCGC 3 cut(s) 93, 261, 295
AclWI GGATC 1 cut(s) 49
AcuI CTGAAG 1 cut(s) 135
AcvI CACGTG 1 cut(s) 145
AdeI CACNNNGTG 1 cut(s) 148
AgsI TTSAA 1 cut(s) 229
AluBI AGCT 4 cut(s) 113, 122, 223, 232
AluI AGCT 4 cut(s) 113, 122, 223, 232
Alw21I GWGCWC 2 cut(s) 110, 225
Alw26I GTCTC 1 cut(s) 308
Alw44I GTGCAC 1 cut(s) 106
AlwI GGATC 1 cut(s) 49
ApaLI GTGCAC 1 cut(s) 106
ApeKI GCWGC 1 cut(s) 122
AsuHPI GGTGA 2 cut(s) 61, 160
BaeGI GKGCMC 1 cut(s) 110
BanII GRGCYC 1 cut(s) 225
BbrPI CACGTG 1 cut(s) 145
Bbv12I GWGCWC 2 cut(s) 110, 225
BbvI GCAGC 1 cut(s) 109
BccI CCATC 2 cut(s) 26, 275
BcoDI GTCTC 1 cut(s) 308
BisI GCNGC 1 cut(s) 123
BlsI GCNGC 1 cut(s) 124
BmsI GCATC 1 cut(s) 181
BsaAI YACGTR 1 cut(s) 145
BsaBI GATNNNNATC 1 cut(s) 40
BsaJI CCNNGG 1 cut(s) 167
Bse8I GATNNNNATC 1 cut(s) 40
BseDI CCNNGG 1 cut(s) 167
BseGI GGATG 2 cut(s) 41, 268
BseJI GATNNNNATC 1 cut(s) 40
BseRI GAGGAG 1 cut(s) 184
BseSI GKGCMC 1 cut(s) 110
BseXI GCAGC 1 cut(s) 109
BsgI GTGCAG 1 cut(s) 108
BsiHKAI GWGCWC 2 cut(s) 110, 225
BsmAI GTCTC 1 cut(s) 308
Bsp1286I GDGCHC 2 cut(s) 110, 225
Bsp143I GATC 2 cut(s) 41, 184
BspACI CCGC 3 cut(s) 93, 261, 295
BspPI GGATC 1 cut(s) 49
BspQI GCTCTTC 1 cut(s) 230
BsrBI CCGCTC 1 cut(s) 295
BssECI CCNNGG 1 cut(s) 167
BssMI GATC 2 cut(s) 41, 184
Bst6I CTCTTC 1 cut(s) 230
BstBAI YACGTR 1 cut(s) 145
BstC8I GCNNGC 2 cut(s) 127, 196
BstF5I GGATG 2 cut(s) 41, 268
BstKTI GATC 2 cut(s) 44, 187
BstMAI GTCTC 1 cut(s) 308
BstMBI GATC 2 cut(s) 41, 184
BstMWI GCNNNNNNNGC 2 cut(s) 119, 229
BstSLI GKGCMC 1 cut(s) 110
BstV1I GCAGC 1 cut(s) 109
BstX2I RGATCY 1 cut(s) 41
BstXI CCANNNNNNTGG 1 cut(s) 281
BstYI RGATCY 1 cut(s) 41
BtsCI GGATG 2 cut(s) 41, 268
BtsIMutI CAGTG 1 cut(s) 187
Cac8I GCNNGC 2 cut(s) 127, 196
CviJI RGCY 5 cut(s) 113, 122, 223, 232, 240
CviKI_1 RGCY 5 cut(s) 113, 122, 223, 232, 240
DpnI GATC 2 cut(s) 43, 186
DpnII GATC 2 cut(s) 41, 184
DraIII CACNNNGTG 1 cut(s) 148
Eam1104I CTCTTC 1 cut(s) 230
EarI CTCTTC 1 cut(s) 230
Ecl136II GAGCTC 1 cut(s) 223
Eco24I GRGCYC 1 cut(s) 225
Eco53kI GAGCTC 1 cut(s) 223
Eco57I CTGAAG 1 cut(s) 135
Eco72I CACGTG 1 cut(s) 145
EcoICRI GAGCTC 1 cut(s) 223
EcoT22I ATGCAT 1 cut(s) 307
EcoT38I GRGCYC 1 cut(s) 225
FaiI YATR 3 cut(s) 78, 89, 176
FalI AAGNNNNNCTT 2 cut(s) 209, 241
FauI CCCGC 2 cut(s) 100, 288
Fnu4HI GCNGC 1 cut(s) 123
FokI GGATG 2 cut(s) 48, 255
FriOI GRGCYC 1 cut(s) 225
Fsp4HI GCNGC 1 cut(s) 123
GluI GCNGC 1 cut(s) 123
HinfI GANTC 1 cut(s) 66
HphI GGTGA 2 cut(s) 61, 160
Hpy166II GTNNAC 1 cut(s) 108
Hpy188I TCNGA 2 cut(s) 31, 168
Hpy188III TCNNGA 1 cut(s) 188
Hpy8I GTNNAC 1 cut(s) 108
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 1 cut(s) 211
HpyCH4IV ACGT 1 cut(s) 144
HpyCH4V TGCA 3 cut(s) 108, 125, 305
HpyF10VI GCNNNNNNNGC 2 cut(s) 119, 229
HpySE526I ACGT 1 cut(s) 144
Kzo9I GATC 2 cut(s) 41, 184
LguI GCTCTTC 1 cut(s) 230
LmnI GCTCC 3 cut(s) 171, 220, 292
LpnPI CCDG 1 cut(s) 111
Lsp1109I GCAGC 1 cut(s) 109
LweI GCATC 1 cut(s) 181
MaeII ACGT 1 cut(s) 144
MalI GATC 2 cut(s) 43, 186
MbiI CCGCTC 1 cut(s) 295
MboI GATC 2 cut(s) 41, 184
MboII GAAGA 2 cut(s) 40, 217
MflI RGATCY 1 cut(s) 41
MhlI GDGCHC 2 cut(s) 110, 225
MluCI AATT 1 cut(s) 245
MnlI CCTC 1 cut(s) 162
Mph1103I ATGCAT 1 cut(s) 307
MseI TTAA 1 cut(s) 300
MspA1I CMGCKG 1 cut(s) 113
MwoI GCNNNNNNNGC 2 cut(s) 119, 229
NdeII GATC 2 cut(s) 41, 184
NsiI ATGCAT 1 cut(s) 307
PciSI GCTCTTC 1 cut(s) 230
PcsI WCGNNNNNNNCGW 1 cut(s) 57
PfeI GAWTC 1 cut(s) 66
PkrI GCNGC 1 cut(s) 124
PmaCI CACGTG 1 cut(s) 145
PmlI CACGTG 1 cut(s) 145
Ppu21I YACGTR 1 cut(s) 145
Psp124BI GAGCTC 1 cut(s) 225
PspCI CACGTG 1 cut(s) 145
PsuI RGATCY 1 cut(s) 41
PvuII CAGCTG 1 cut(s) 113
SacI GAGCTC 1 cut(s) 225
SapI GCTCTTC 1 cut(s) 230
SaqAI TTAA 1 cut(s) 300
SatI GCNGC 1 cut(s) 123
Sau3AI GATC 2 cut(s) 41, 184
SduI GDGCHC 2 cut(s) 110, 225
SetI ASST 6 cut(s) 100, 115, 124, 147, 225, 234
SfaNI GCATC 1 cut(s) 181
Sse9I AATT 1 cut(s) 245
SsiI CCGC 3 cut(s) 93, 261, 295
SstI GAGCTC 1 cut(s) 225
TaiI ACGT 1 cut(s) 147
TaqI TCGA 2 cut(s) 60, 187
TasI AATT 1 cut(s) 245
TfiI GAWTC 1 cut(s) 66
Tru1I TTAA 1 cut(s) 300
Tru9I TTAA 1 cut(s) 300
TscAI CASTG 1 cut(s) 187
TseI GCWGC 1 cut(s) 122
TspDTI ATGAA 2 cut(s) 76, 257
TspGWI ACGGA 1 cut(s) 305
TspRI CASTG 1 cut(s) 187
VneI GTGCAC 1 cut(s) 106
Zsp2I ATGCAT 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.