FvH4_2g17922

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000291
Physical Location & Seq
Forward (+)
15355977 .. 15359575
3599 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g17922.t1

Sequence Viewer

Length: 3024 bp
ATGTACATGGATTGTGTACAAGGCAATAGAACGGTAGACGAGTACACGGATGAGTTCTTAAGGTTAGTAGAACGCAATCAATTGGGAGAGTCAGAGGCGCAAAAAGTGGCAAGGTATCTGAGTGGATTGAGACCTTCGATTCAAGAGAAAATTGGTTTACAAACTGTGTGGACCATTGCTGAGGCTCAGAATTTGGCCTTGAAGGCAGAGCTAATGGAGAAAGCAAAAAGGACTTATTCCAATGTTGAGAGAGGAAGGCAGATTTCTATTCCTGATAGGGTTTCTACCCCTTTCAAAAGAGCAGAAAACAACAGCAGTAGCAGCAGCAGGGTTAGTGAAAATACTGAGAACCCTAAACAAAACCTGAAGCCCAACCCTTATGCAAAACCCACTGGAGACAAATGTTATCGGTGCAAGCAACTTGGACATCGTTCCAATAATTGTCCAGAACGAAAGGTGCCTATTTCCATTGGGAGACACTATCGTGACGAGGTGAGTTGTGATGTTGTTGATATGGATGTCTGTCACATATTGTTAGGGAGGCCTTGGCAGTATGATCTAGATGTCACTCATAAGGGCAAGGATAATGTGATGTTGTTTACATGGAAGGAGCACAAGATTGCTATGGCTCCGTTAAGCAATTCTGAAGGTCCCAAGAAAGGCAATTCGAGTTTTCTCACCATCAGCAACAACGATTGTGAGTTGAATGAGGCCATAAAAGAATCCAAAACCATTTTTCCTATAGTGGTTAAGGGTTTGATGGCAGTAGAGAAGCAAGGCGGAGAGATTCCGAAGGAGCTCTGGGAGTTGTTAGAAGGATTTAAGGAGTTAATTGCTGATGATATTCCTAATGAGCTGCCACCCATGAGAGACATTCAACATCAAATAGACTTCATTCCAGGAGCTAGTCTACCTAACCTGCCACACTACAGAATGAGCCCTAAAGAATGTGAGATCTTAGGGGAGATTATTGAAGATTTGCTAAAGAAAGGGTTTATTCGAGAGAGTATGAGCCCTTGTGCGGTTCCTGTTTTGCTGGTACCTAAGAAAGGAGGAACATGGAGGATGTGTGTGGACAGCAGAGTCATCAACAAGATAACAATCAAGTATAAATTTCCTATCCCACGCCTTGAAGACATGCTTGATGAGTTGAATGGTTCCAAGTGGTTCTCGAAGATAGATTTGAGAAGTGGATATCACCATATTCGAGTCAAACCTGGGGATGAGTGGAAAACTGCGTTCAAGACCAAAGATGGGTTATATGAGTGGTCGGTGATGCCTTTTGGGTTGTCCAACGCTCCTAGCACCTTTATGAGACTTATGAATCAGGTTCTTCGTCCTTTCATTGGAACCAGGGTTGTTGTTTATTTCGAAGATATCCTTATTTATAGTAAGCAGAAAACCGAGCACCTAGAACATGTGAGGCAAGTTCTTGAGGTGCTACGGGATAATAAGTTGTACATCAACCTGAAGAAGTGTACTTTTTGCACCAATAAGCTGCTGTTTCTAGGCTTTGTGGTTGGAGAGGATGAGATTCAGGTTGATGAAGAGAAGGTACGTGCAATTAGAGAGTGGCCAACTCCTAGAACAGTTTCGGAGGTAAGAAGTTTCCATGGTTTAGCTACTTTCTATAGACGGTTTGTGAGGGATTTCAGTACCATCACTGCACCAATTACTGAATGCATGAAGAAAGGCAAGTTTCATTGGGGTGAAGAGCAAGAGCAAAGTTTTGCACTTATCAAAGAGAAGCTTTGTACCGCACCAGTTTTGGCTCTTCCAGATTTTGACAAGATATTCGAGGTCGAATGTGATGCTAGTGGTGTTGGAGTGGGGGCTATCTTGTCCCAAGAAAAGAGGGCAGTGGCTTTCTTTAGCGAGAAGTTGAGTGAAGCTCGCCAAAAATGGAGTACATATGACCAAGAGTTCTATGCAGTAGTGAGAGCTTTAAGGCAATGGGAGCATTATCTGATCCAAAGAAAGTTTATTTTGTTCACTGATCATCAGGCTTTGAAGTGTCTGAACAGTCAGAAACATGTAAACAAGATGCATATCAGATGGGTGACGTTTCTGCAGAAATTTCCTTTTGTGATCAAGCATAAGTCGGGAACACTCAACAAGGTGGCTGATGCGTTAAGCAGGCGAGCTAGTTTGTTGGTTACTTTATCCCAAGAGGTAACTGGTTTTGACTTTTTGAAAGAATTATATGAAGCAGATGATGATTTCAAGCAGGATGTTTCTATGGATTTTGTCTTGGGTTTACCTTGGACCCAAAGAGGAGTGGATTCTGTGTTTGTGGTGGTGGATAGATTTTCTAAGATGAGTCACTTCATCGCTTGCAAGAAAACTGCAGATGCTGCAAATATAGCCAAACTGTTTTTCAGGGAGGAGTACTACCGCTCACATGGACAAACTGAAGTCACCAATAGGAGTTTGGGAAATATGATCAGGAGTGTCTGTGGTAATAAGCCGAAGCAATGGGACCTTGCCTTACCTCAGGTAGAATTCACTTACAACAGTTCTATGCATAGTGCCATTGGTAAGTCACATTTCTCTGTGGTCTACATTTCTCCTCCACGACATGTCGTGGATTTGGCAAAGTTGCCAAGAGGACAAGGAGTTAGTGATGTTGCAATTAAAATGGCAGAGGGAGTTCGGACAATTCAAGAAGAGATAAAGGCAAAGTTGGAGGAGACAAACGCCAAGTATAAGGCTGCTGCCGACAAGCACAGGCGTGTGAAGGTGTTTCAGGAAGGGGATTCGGTCATGGTTTTCCTCAGGAAGGAGAGGTATCCTGTTGGCACATATAACAAGCTGAAACCCAAGAAATATGGACCATTCAAGGTATTGAAGAGGATTAATGATAATGCTTATGTTATTGATCTTCCTGCTTCTATGGGAATTTCAAATTCTTTTAATGTTGCTGATCTGCATGAGTTTCATGAGGATGATTTTCTTTTAGGTGATAATAACTCGAGGTCGAGTTCTTCTGAAGTGGAGGAGACTGATATAGAAAGATGGCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 Retrotrans_gag rve zf-CCHC zf-H2C2

Protein Analysis

1008

Amino Acids

115.78

Weight (kDa)

8.77

Isoelectric Point (pI)

46.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_1 PF00078 347 - 506 1.2e-42 Reverse transcriptase (RNA-dependent DNA polymerase)
RT_RNaseH_2 PF17919 569 - 662 3.6e-30 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 594 - 693 3.3e-32 RNase H-like domain found in reverse transcriptase
SH3_Tf2-1 PF24626 918 - 980 1.5e-18 Tf2-1-like, SH3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000291)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00860
fragaria_vesca FvH4_1g23712 FvH4_1g29809 FvH4_1g29810 FvH4_2g02661 FvH4_2g13451 FvH4_2g17921 FvH4_2g17922 FvH4_2g19251 FvH4_2g19252 FvH4_2g28221 FvH4_2g35961 FvH4_3g10372 FvH4_3g12461 FvH4_3g12461 FvH4_3g27861 FvH4_3g34591 FvH4_3g40201 FvH4_3g44612 FvH4_4g08352 FvH4_4g12251 FvH4_4g12742 FvH4_4g13904 FvH4_4g14287 FvH4_4g15243 FvH4_4g24071 FvH4_4g33448 FvH4_5g21912 FvH4_5g39371 FvH4_6g14992 FvH4_6g15221 FvH4_6g20603 FvH4_6g31093 FvH4_6g32372 FvH4_6g33012
malus_domestica MD11G1009100.v1.1 MD13G1145000.v1.1 MD16G1138700.v1.1
prunus_persica Prupe.5G246300_v2.0.a1 Prupe.7G034800_v2.0.a1 Prupe.8G084500_v2.0.a1
pyrus_communis pycom01g18240 pycom04g00330 pycom05g09010 pycom06g01670 pycom06g01690 pycom06g07180 pycom06g11620 pycom10g05720 pycom1134g00040 pycom1134g00060 pycom12486g00010 pycom12555g00230 pycom13g21670 pycom13g23130 pycom13g23140 pycom14g10580
rosa_chinensis RchiOBHm_Chr1g0330691 RchiOBHm_Chr2g0106171 RchiOBHm_Chr2g0134731 RchiOBHm_Chr2g0142791 RchiOBHm_Chr2g0149861 RchiOBHm_Chr3g0452401 RchiOBHm_Chr3g0461881 RchiOBHm_Chr4g0401341 RchiOBHm_Chr5g0075641 RchiOBHm_Chr6g0265961 RchiOBHm_Chr7g0200201 RchiOBHm_Chr7g0237811
rosa_laevigata RLG00000002773
rosa_multiflora Rmu_co8037806.1_g000001 Rmu_co8445989.1_g000001 Rmu_sc0000745.1_g000039 Rmu_sc0004448.1_g000029 Rmu_sc0004488.1_g000002 Rmu_sc0004591.1_g000018 Rmu_sc0005065.1_g000030 Rmu_sc0005150.1_g000005 Rmu_sc0005654.1_g000011 Rmu_sc0006986.1_g000016
rosa_roxburghii Rroxscaffold_164G00436490 Rroxscaffold_175G00432490 Rroxscaffold_1G00059440 Rroxscaffold_1G00064410 Rroxscaffold_2G00100310 Rroxscaffold_2G00128170 Rroxscaffold_3G00239420 Rroxscaffold_3G00264970 Rroxscaffold_3G00271550 Rroxscaffold_4G00300240 Rroxscaffold_5G00385050 Rroxscaffold_6G00399720
rosa_rugosa Rorug02G0252200
rosa_samantha Rh2DG251900 Rh7CG329900
rosa_wichuraiana Rw0G004800 Rw1G000850 Rw1G022350 Rw2G027030 Rw2G027760 Rw2G028410 Rw2G029130 Rw2G029390 Rw2G032490 Rw2G039460 Rw2G047800 Rw2G050340 Rw3G026430 Rw4G018370 Rw4G030750 Rw4G033140 Rw5G011950 Rw5G012010 Rw5G029280 Rw5G040190 Rw5G044570 Rw5G048240 Rw6G000340 Rw6G010140 Rw6G026480 Rw7G033750 Rw7G037250 Rw7G042080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1082
Acc36I ACCTGC 1 cut(s) 927
Acc65I GGTACC 1 cut(s) 1039
AccB1I GGYRCC 2 cut(s) 457, 1039
AccBSI CCGCTC 1 cut(s) 2397
AccI GTMKAC 3 cut(s) 36, 910, 2559
AciI CCGC 4 cut(s) 780, 1022, 1758, 2395
AclWI GGATC 1 cut(s) 1963
AcoI YGGCCR 1 cut(s) 1574
AcsI RAATTY 6 cut(s) 190, 1112, 2075, 2501, 2898, 2905
AcuI CTGAAG 5 cut(s) 386, 666, 1490, 2433, 3009
AfiI CCNNNNNNNGG 6 cut(s) 659, 1021, 1049, 1254, 1346, 2779
AflII CTTAAG 1 cut(s) 58
AflIII ACRYGT 3 cut(s) 1417, 2032, 2578
AjnI CCWGG 3 cut(s) 898, 1216, 1352
AjuI GAANNNNNNNTTGG 2 cut(s) 2360, 2392
AleI CACNNNNGTG 2 cut(s) 483, 2730
Alw21I GWGCWC 3 cut(s) 615, 801, 1410
Alw26I GTCTC 7 cut(s) 124, 390, 469, 864, 1309, 2684, 2993
AlwI GGATC 1 cut(s) 1963
AlwNI CAGNNNCTG 1 cut(s) 2354
Ama87I CYCGRG 1 cut(s) 2971
AoxI GGCC 4 cut(s) 195, 542, 711, 1574
ApeKI GCWGC 7 cut(s) 321, 324, 856, 1498, 2354, 2711, 2714
ApoI RAATTY 6 cut(s) 190, 1112, 2075, 2501, 2898, 2905
ArsI GACNNNNNNTTYG 2 cut(s) 1778, 1810
AseI ATTAAT 1 cut(s) 2856
Asp700I GAANNNNTTC 1 cut(s) 1591
Asp718I GGTACC 1 cut(s) 1039
AspLEI GCGC 1 cut(s) 100
AspS9I GGNCC 5 cut(s) 171, 650, 2265, 2479, 2831
AsuHPI GGTGA 8 cut(s) 505, 670, 1190, 1285, 1721, 2071, 2410, 2972
AsuII TTCGAA 1 cut(s) 1371
AvaI CYCGRG 1 cut(s) 2971
AvaII GGWCC 5 cut(s) 171, 650, 2265, 2479, 2831
AxyI CCTNAGG 2 cut(s) 2493, 2774
BalI TGGCCA 1 cut(s) 1576
BanI GGYRCC 2 cut(s) 457, 1039
BanII GRGCYC 3 cut(s) 801, 941, 1016
BarI GAAGNNNNNNTAC 2 cut(s) 1539, 1571
BbsI GAAGAC 1 cut(s) 1140
Bbv12I GWGCWC 3 cut(s) 615, 801, 1410
BbvCI CCTCAGC 1 cut(s) 180
BbvI GCAGC 7 cut(s) 333, 336, 843, 1485, 2341, 2698, 2701
BccI CCATC 6 cut(s) 689, 754, 1247, 1667, 2049, 3009
BcgI CGANNNNNNTGC 2 cut(s) 1793, 1827
BciT130I CCWGG 3 cut(s) 900, 1218, 1354
BciVI GTATCC 1 cut(s) 2799
BclI TGATCA 3 cut(s) 1996, 2088, 2442
BcoDI GTCTC 7 cut(s) 124, 390, 469, 864, 1309, 2684, 2993
BfaI CTAG 8 cut(s) 560, 906, 1302, 1412, 1508, 1584, 1815, 2145
BfmI CTRYAG 5 cut(s) 741, 928, 1630, 2069, 2346
BfrI CTTAAG 1 cut(s) 58
BfuAI ACCTGC 1 cut(s) 927
BfuI GTATCC 1 cut(s) 2799
BglI GCCNNNNNGGC 1 cut(s) 203
BglII AGATCT 1 cut(s) 954
BisI GCNGC 7 cut(s) 322, 325, 857, 1499, 2355, 2712, 2715
BlsI GCNGC 7 cut(s) 323, 326, 858, 1500, 2356, 2713, 2716
BmcAI AGTACT 1 cut(s) 2390
Bme1390I CCNGG 3 cut(s) 900, 1218, 1354
Bme18I GGWCC 5 cut(s) 171, 650, 2265, 2479, 2831
BmeT110I CYCGRG 1 cut(s) 2971
BmgT120I GGNCC 5 cut(s) 171, 650, 2265, 2479, 2831
BmiI GGNNCC 9 cut(s) 459, 630, 652, 1026, 1041, 1159, 1351, 2267, 2480
BmrFI CCNGG 3 cut(s) 900, 1218, 1354
BmsI GCATC 5 cut(s) 1266, 1801, 2034, 2116, 2341
BpiI GAAGAC 1 cut(s) 1140
BplI GAGNNNNNCTC 2 cut(s) 1876, 1908
BpmI CTGGAG 1 cut(s) 414
Bpu10I CCTNAGC 1 cut(s) 180
Bpu14I TTCGAA 1 cut(s) 1371
BpuEI CTTGAG 1 cut(s) 1454
BsaAI YACGTR 1 cut(s) 1559
BsaBI GATNNNNATC 2 cut(s) 1100, 2048
BsaI GGTCTC 1 cut(s) 124
BsaJI CCNNGG 5 cut(s) 545, 1217, 1353, 1612, 2261
BsaXI ACNNNNNCTCC 4 cut(s) 1054, 1084, 2440, 2470
Bsc4I CCNNNNNNNGG 6 cut(s) 659, 1021, 1049, 1254, 1346, 2779
Bse1I ACTGG 3 cut(s) 397, 1763, 2182
Bse21I CCTNAGG 2 cut(s) 2493, 2774
Bse3DI GCAATG 3 cut(s) 174, 1958, 2480
Bse8I GATNNNNATC 2 cut(s) 1100, 2048
BseBI CCWGG 3 cut(s) 900, 1218, 1354
BseDI CCNNGG 5 cut(s) 545, 1217, 1353, 1612, 2261
BseGI GGATG 7 cut(s) 55, 523, 1071, 1228, 1534, 2236, 2950
BseJI GATNNNNATC 2 cut(s) 1100, 2048
BseLI CCNNNNNNNGG 6 cut(s) 659, 1021, 1049, 1254, 1346, 2779
BseMI GCAATG 3 cut(s) 174, 1958, 2480
BseMII CTCAG 6 cut(s) 110, 171, 200, 336, 2507, 2788
BseNI ACTGG 3 cut(s) 397, 1763, 2182
BseRI GAGGAG 5 cut(s) 2289, 2399, 2559, 2702, 3011
BseXI GCAGC 7 cut(s) 333, 336, 843, 1485, 2341, 2698, 2701
BsgI GTGCAG 1 cut(s) 1650
BshFI GGCC 4 cut(s) 197, 544, 713, 1576
BshNI GGYRCC 2 cut(s) 457, 1039
BsiHKAI GWGCWC 3 cut(s) 615, 801, 1410
BsiHKCI CYCGRG 1 cut(s) 2971
BslFI GGGAC 3 cut(s) 636, 1828, 2492
BslI CCNNNNNNNGG 6 cut(s) 659, 1021, 1049, 1254, 1346, 2779
BsmAI GTCTC 7 cut(s) 124, 390, 469, 864, 1309, 2684, 2993
BsmFI GGGAC 3 cut(s) 636, 1828, 2492
BsmI GAATGC 1 cut(s) 1685
BsnI GGCC 4 cut(s) 197, 544, 713, 1576
Bso31I GGTCTC 1 cut(s) 124
BsoBI CYCGRG 1 cut(s) 2971
Bsp119I TTCGAA 1 cut(s) 1371
Bsp1286I GDGCHC 5 cut(s) 615, 801, 941, 1016, 1410
Bsp1407I TGTACA 3 cut(s) 3, 16, 1458
Bsp143I GATC 8 cut(s) 556, 954, 1968, 1996, 2088, 2442, 2878, 2923
Bsp19I CCATGG 1 cut(s) 1612
BspACI CCGC 4 cut(s) 780, 1022, 1758, 2395
BspANI GGCC 4 cut(s) 197, 544, 713, 1576
BspCNI CTCAG 6 cut(s) 111, 172, 199, 337, 2506, 2787
BspHI TCATGA 1 cut(s) 2938
BspLI GGNNCC 9 cut(s) 459, 630, 652, 1026, 1041, 1159, 1351, 2267, 2480
BspMAI CTGCAG 2 cut(s) 2073, 2350
BspMI ACCTGC 1 cut(s) 927
BspPI GGATC 1 cut(s) 1963
BspQI GCTCTTC 2 cut(s) 1707, 1779
BspT104I TTCGAA 1 cut(s) 1371
BspT107I GGYRCC 2 cut(s) 457, 1039
BspTI CTTAAG 1 cut(s) 58
BspTNI GGTCTC 1 cut(s) 124
BsrBI CCGCTC 1 cut(s) 2397
BsrDI GCAATG 3 cut(s) 174, 1958, 2480
BsrGI TGTACA 3 cut(s) 3, 16, 1458
BsrI ACTGG 3 cut(s) 397, 1763, 2182
BssECI CCNNGG 5 cut(s) 545, 1217, 1353, 1612, 2261
BssMI GATC 8 cut(s) 556, 954, 1968, 1996, 2088, 2442, 2878, 2923
BssT1I CCWWGG 3 cut(s) 545, 1612, 2261
Bst2UI CCWGG 3 cut(s) 900, 1218, 1354
Bst4CI ACNGT 7 cut(s) 34, 166, 1591, 1638, 2024, 2373, 2516
Bst6I CTCTTC 5 cut(s) 1542, 1707, 1779, 2661, 2843
BstAFI CTTAAG 1 cut(s) 58
BstAPI GCANNNNNTGC 1 cut(s) 2354
BstAUI TGTACA 3 cut(s) 3, 16, 1458
BstBAI YACGTR 1 cut(s) 1559
BstBI TTCGAA 1 cut(s) 1371
BstC8I GCNNGC 5 cut(s) 416, 1894, 2138, 2142, 2335
BstDEI CTNAG 9 cut(s) 119, 180, 186, 345, 958, 1044, 2313, 2493, 2774
BstDSI CCRYGG 1 cut(s) 1612
BstENI CCTNNNNNAGG 2 cut(s) 1047, 2777
BstF5I GGATG 7 cut(s) 55, 523, 1071, 1228, 1534, 2236, 2950
BstHHI GCGC 1 cut(s) 100
BstKTI GATC 8 cut(s) 559, 957, 1971, 1999, 2091, 2445, 2881, 2926
BstMAI GTCTC 7 cut(s) 124, 390, 469, 864, 1309, 2684, 2993
BstMBI GATC 8 cut(s) 556, 954, 1968, 1996, 2088, 2442, 2878, 2923
BstMWI GCNNNNNNNGC 5 cut(s) 203, 321, 1957, 2354, 2363
BstNI CCWGG 3 cut(s) 900, 1218, 1354
BstNSI RCATGY 4 cut(s) 1141, 1421, 2036, 2582
BstSCI CCNGG 3 cut(s) 898, 1216, 1352
BstSFI CTRYAG 5 cut(s) 741, 928, 1630, 2069, 2346
BstV1I GCAGC 7 cut(s) 333, 336, 843, 1485, 2341, 2698, 2701
BstV2I GAAGAC 1 cut(s) 1140
BstX2I RGATCY 1 cut(s) 954
BstYI RGATCY 1 cut(s) 954
Bsu36I CCTNAGG 2 cut(s) 2493, 2774
BsuI GTATCC 1 cut(s) 2799
BsuRI GGCC 4 cut(s) 197, 544, 713, 1576
BtgI CCRYGG 1 cut(s) 1612
BtgZI GCGATG 1 cut(s) 2314
BtsCI GGATG 7 cut(s) 55, 523, 1071, 1228, 1534, 2236, 2950
BtsI GCAGTG 2 cut(s) 1662, 1866
BtsIMutI CAGTG 4 cut(s) 390, 1662, 1866, 1992
BveI ACCTGC 1 cut(s) 927
Cac8I GCNNGC 5 cut(s) 416, 1894, 2138, 2142, 2335
CaiI CAGNNNCTG 1 cut(s) 2354
CciI TCATGA 1 cut(s) 2938
CfoI GCGC 1 cut(s) 100
Cfr13I GGNCC 5 cut(s) 171, 650, 2265, 2479, 2831
CspCI CAANNNNNGTGG 2 cut(s) 149, 184
DdeI CTNAG 9 cut(s) 119, 180, 186, 345, 958, 1044, 2313, 2493, 2774
DpnI GATC 8 cut(s) 558, 956, 1970, 1998, 2090, 2444, 2880, 2925
DpnII GATC 8 cut(s) 556, 954, 1968, 1996, 2088, 2442, 2878, 2923
DrdI GACNNNNNNGTC 1 cut(s) 1082
DseDI GACNNNNNNGTC 1 cut(s) 1082
EaeI YGGCCR 1 cut(s) 1574
Eam1104I CTCTTC 5 cut(s) 1542, 1707, 1779, 2661, 2843
EarI CTCTTC 5 cut(s) 1542, 1707, 1779, 2661, 2843
EciI GGCGGA 1 cut(s) 795
Ecl136II GAGCTC 1 cut(s) 799
Eco130I CCWWGG 3 cut(s) 545, 1612, 2261
Eco147I AGGCCT 1 cut(s) 544
Eco24I GRGCYC 3 cut(s) 801, 941, 1016
Eco31I GGTCTC 1 cut(s) 124
Eco32I GATATC 2 cut(s) 1196, 1378
Eco47I GGWCC 5 cut(s) 171, 650, 2265, 2479, 2831
Eco53kI GAGCTC 1 cut(s) 799
Eco57I CTGAAG 5 cut(s) 386, 666, 1490, 2433, 3009
Eco81I CCTNAGG 2 cut(s) 2493, 2774
Eco88I CYCGRG 1 cut(s) 2971
EcoICRI GAGCTC 1 cut(s) 799
EcoNI CCTNNNNNAGG 2 cut(s) 1047, 2777
EcoO109I RGGNCCY 2 cut(s) 650, 2479
EcoRI GAATTC 1 cut(s) 2501
EcoRII CCWGG 3 cut(s) 898, 1216, 1352
EcoRV GATATC 2 cut(s) 1196, 1378
EcoT14I CCWWGG 3 cut(s) 545, 1612, 2261
EcoT22I ATGCAT 3 cut(s) 1685, 2049, 2526
EcoT38I GRGCYC 3 cut(s) 801, 941, 1016
ErhI CCWWGG 3 cut(s) 545, 1612, 2261
FalI AAGNNNNNCTT 6 cut(s) 1125, 1157, 1365, 1397, 1734, 1766
FaqI GGGAC 3 cut(s) 636, 1828, 2492
FauNDI CATATG 1 cut(s) 1912
FbaI TGATCA 3 cut(s) 1996, 2088, 2442
FblI GTMKAC 3 cut(s) 36, 910, 2559
Fnu4HI GCNGC 7 cut(s) 322, 325, 857, 1499, 2355, 2712, 2715
FokI GGATG 7 cut(s) 62, 530, 1078, 1235, 1541, 2243, 2957
FriOI GRGCYC 3 cut(s) 801, 941, 1016
Fsp4HI GCNGC 7 cut(s) 322, 325, 857, 1499, 2355, 2712, 2715
FspBI CTAG 8 cut(s) 560, 906, 1302, 1412, 1508, 1584, 1815, 2145
GlaI GCGC 1 cut(s) 99
GluI GCNGC 7 cut(s) 322, 325, 857, 1499, 2355, 2712, 2715
GsuI CTGGAG 1 cut(s) 414
HaeIII GGCC 4 cut(s) 197, 544, 713, 1576
HhaI GCGC 1 cut(s) 100
Hin6I GCGC 1 cut(s) 98
HinP1I GCGC 1 cut(s) 98
HindIII AAGCTT 1 cut(s) 1748
HphI GGTGA 8 cut(s) 505, 670, 1190, 1285, 1721, 2071, 2410, 2972
HpyCH4III ACNGT 7 cut(s) 34, 166, 1591, 1638, 2024, 2373, 2516
HpyCH4IV ACGT 2 cut(s) 1558, 2063
HpyF10VI GCNNNNNNNGC 5 cut(s) 203, 321, 1957, 2354, 2363
HpyF3I CTNAG 9 cut(s) 119, 180, 186, 345, 958, 1044, 2313, 2493, 2774
HpySE526I ACGT 2 cut(s) 1558, 2063
HspAI GCGC 1 cut(s) 98
KpnI GGTACC 1 cut(s) 1043
Ksp22I TGATCA 3 cut(s) 1996, 2088, 2442
Kzo9I GATC 8 cut(s) 556, 954, 1968, 1996, 2088, 2442, 2878, 2923
LguI GCTCTTC 2 cut(s) 1707, 1779
LmnI GCTCC 6 cut(s) 610, 634, 796, 902, 1303, 1957
Lsp1109I GCAGC 7 cut(s) 333, 336, 843, 1485, 2341, 2698, 2701
LweI GCATC 5 cut(s) 1266, 1801, 2034, 2116, 2341
MaeI CTAG 8 cut(s) 560, 906, 1302, 1412, 1508, 1584, 1815, 2145
MaeII ACGT 2 cut(s) 1558, 2063
MaeIII GTNAC 9 cut(s) 485, 524, 565, 2059, 2155, 2173, 2321, 2416, 2541
MalI GATC 8 cut(s) 558, 956, 1970, 1998, 2090, 2444, 2880, 2925
MbiI CCGCTC 1 cut(s) 2397
MboI GATC 8 cut(s) 556, 954, 1968, 1996, 2088, 2442, 2878, 2923
MfeI CAATTG 1 cut(s) 80
MflI RGATCY 1 cut(s) 954
MhlI GDGCHC 5 cut(s) 615, 801, 941, 1016, 1410
MlsI TGGCCA 1 cut(s) 1576
MluNI TGGCCA 1 cut(s) 1576
MlyI GAGTC 4 cut(s) 98, 1092, 1218, 2329
MmeI TCCRAC 4 cut(s) 1317, 1501, 1804, 2664
Mox20I TGGCCA 1 cut(s) 1576
Mph1103I ATGCAT 3 cut(s) 1685, 2049, 2526
MroXI GAANNNNTTC 1 cut(s) 1591
MscI TGGCCA 1 cut(s) 1576
MslI CAYNNNNRTG 5 cut(s) 483, 1310, 1707, 2730, 2943
Msp20I TGGCCA 1 cut(s) 1576
MspCI CTTAAG 1 cut(s) 58
MspR9I CCNGG 3 cut(s) 900, 1218, 1354
MunI CAATTG 1 cut(s) 80
Mva1269I GAATGC 1 cut(s) 1685
MvaI CCWGG 3 cut(s) 900, 1218, 1354
MwoI GCNNNNNNNGC 5 cut(s) 203, 321, 1957, 2354, 2363
NcoI CCATGG 1 cut(s) 1612
NdeI CATATG 1 cut(s) 1912
NdeII GATC 8 cut(s) 556, 954, 1968, 1996, 2088, 2442, 2878, 2923
NlaIV GGNNCC 9 cut(s) 459, 630, 652, 1026, 1041, 1159, 1351, 2267, 2480
NmuCI GTSAC 7 cut(s) 485, 524, 565, 2059, 2321, 2416, 2541
NsiI ATGCAT 3 cut(s) 1685, 2049, 2526
NspI RCATGY 4 cut(s) 1141, 1421, 2036, 2582
NspV TTCGAA 1 cut(s) 1371
OliI CACNNNNGTG 2 cut(s) 483, 2730
PaeR7I CTCGAG 1 cut(s) 2971
PagI TCATGA 1 cut(s) 2938
PceI AGGCCT 1 cut(s) 544
PciI ACATGT 3 cut(s) 1417, 2032, 2578
PciSI GCTCTTC 2 cut(s) 1707, 1779
PctI GAATGC 1 cut(s) 1685
PdmI GAANNNNTTC 1 cut(s) 1591
PfeI GAWTC 7 cut(s) 139, 722, 787, 1324, 1534, 2282, 2756
PfoI TCCNGGA 1 cut(s) 898
PkrI GCNGC 7 cut(s) 323, 326, 858, 1500, 2356, 2713, 2716
PleI GAGTC 4 cut(s) 97, 1091, 1217, 2328
PpsI GAGTC 4 cut(s) 97, 1091, 1217, 2328
Ppu21I YACGTR 1 cut(s) 1559
PpuMI RGGWCCY 2 cut(s) 650, 2479
PscI ACATGT 3 cut(s) 1417, 2032, 2578
PshBI ATTAAT 1 cut(s) 2856
Psp124BI GAGCTC 1 cut(s) 801
Psp5II RGGWCCY 2 cut(s) 650, 2479
Psp6I CCWGG 3 cut(s) 898, 1216, 1352
PspGI CCWGG 3 cut(s) 898, 1216, 1352
PspN4I GGNNCC 9 cut(s) 459, 630, 652, 1026, 1041, 1159, 1351, 2267, 2480
PspPI GGNCC 5 cut(s) 171, 650, 2265, 2479, 2831
PspPPI RGGWCCY 2 cut(s) 650, 2479
PspXI VCTCGAGB 1 cut(s) 2971
PstI CTGCAG 2 cut(s) 2073, 2350
PstNI CAGNNNCTG 1 cut(s) 2354
PsuI RGATCY 1 cut(s) 954
RseI CAYNNNNRTG 5 cut(s) 483, 1310, 1707, 2730, 2943
SacI GAGCTC 1 cut(s) 801
SapI GCTCTTC 2 cut(s) 1707, 1779
SatI GCNGC 7 cut(s) 322, 325, 857, 1499, 2355, 2712, 2715
Sau3AI GATC 8 cut(s) 556, 954, 1968, 1996, 2088, 2442, 2878, 2923
Sau96I GGNCC 5 cut(s) 171, 650, 2265, 2479, 2831
ScaI AGTACT 1 cut(s) 2390
SchI GAGTC 4 cut(s) 98, 1092, 1218, 2329
ScrFI CCNGG 3 cut(s) 900, 1218, 1354
SduI GDGCHC 5 cut(s) 615, 801, 941, 1016, 1410
SfaNI GCATC 5 cut(s) 1266, 1801, 2034, 2116, 2341
SfcI CTRYAG 5 cut(s) 741, 928, 1630, 2069, 2346
Sfr274I CTCGAG 1 cut(s) 2971
SfuI TTCGAA 1 cut(s) 1371
SinI GGWCC 5 cut(s) 171, 650, 2265, 2479, 2831
SlaI CTCGAG 1 cut(s) 2971
SmiMI CAYNNNNRTG 5 cut(s) 483, 1310, 1707, 2730, 2943
SmlI CTYRAG 3 cut(s) 58, 1433, 2971
SmoI CTYRAG 3 cut(s) 58, 1433, 2971
SseBI AGGCCT 1 cut(s) 544
SsiI CCGC 4 cut(s) 780, 1022, 1758, 2395
SspMI CTAG 8 cut(s) 560, 906, 1302, 1412, 1508, 1584, 1815, 2145
SstI GAGCTC 1 cut(s) 801
StuI AGGCCT 1 cut(s) 544
StyD4I CCNGG 3 cut(s) 898, 1216, 1352
StyI CCWWGG 3 cut(s) 545, 1612, 2261
TaaI ACNGT 7 cut(s) 34, 166, 1591, 1638, 2024, 2373, 2516
TaiI ACGT 2 cut(s) 1561, 2066
TaqII GACCGA 1 cut(s) 2749
TatI WGTACW 7 cut(s) 3, 16, 42, 1458, 1478, 1907, 2388
TfiI GAWTC 7 cut(s) 139, 722, 787, 1324, 1534, 2282, 2756
TscAI CASTG 4 cut(s) 397, 1669, 1866, 1999
TseFI GTSAC 7 cut(s) 485, 524, 565, 2059, 2321, 2416, 2541
TseI GCWGC 7 cut(s) 321, 324, 856, 1498, 2354, 2711, 2714
Tsp45I GTSAC 7 cut(s) 485, 524, 565, 2059, 2321, 2416, 2541
TspDTI ATGAA 9 cut(s) 883, 1333, 1337, 1560, 1691, 1700, 2220, 2317, 2927
TspGWI ACGGA 2 cut(s) 62, 621
TspRI CASTG 4 cut(s) 397, 1669, 1866, 1999
Vha464I CTTAAG 1 cut(s) 58
VpaK11BI GGWCC 5 cut(s) 171, 650, 2265, 2479, 2831
VspI ATTAAT 1 cut(s) 2856
XagI CCTNNNNNAGG 2 cut(s) 1047, 2777
XapI RAATTY 6 cut(s) 190, 1112, 2075, 2501, 2898, 2905
XbaI TCTAGA 1 cut(s) 559
XceI RCATGY 4 cut(s) 1141, 1421, 2036, 2582
XcmI CCANNNNNNNNNTGG 2 cut(s) 2174, 2428
XhoI CTCGAG 1 cut(s) 2971
XmiI GTMKAC 3 cut(s) 36, 910, 2559
XmnI GAANNNNTTC 1 cut(s) 1591
XspI CTAG 8 cut(s) 560, 906, 1302, 1412, 1508, 1584, 1815, 2145
ZrmI AGTACT 1 cut(s) 2390
Zsp2I ATGCAT 3 cut(s) 1685, 2049, 2526
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.