Rroxscaffold_3G00271550

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000291
Physical Location & Seq
Forward (+)
63905080 .. 63923250
18171 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00271550.1

Sequence Viewer

Length: 792 bp
ATGGTGGCTGGAGAATCAAGATCTCCAGCTAGTTCCGGAGATGGCAGAGGAAGAACTGAAGAGGGAGGTCGGGAGAGAGAGTATGTTGACTTTCCAAAAGTGGAAGCCACATATAATCAAACAAGCCGCAAAGCTCAAAATAGATACCGCTACTCTTCATCTAATCGGACTCCTGATTTTTTTCGGTCACCCTGTGGAGAGCTGACTCGGAAGGAAACTGCTTTGAGCTTGACGGAGTCTGTTGCTCTTCCGGTGGGGCAAGGGAAACAAAAATCTCATTCGAAGCAATGGGTGAAGTTACAAAAGCGAGATATCGAAGCACTTACAACGGCGTTCATCGCTGCCATCAATTCCATGAACACTCGTATTGGAGAAATTCGTGGATTGTTGGGAGAGAGGAACAACAACAACAACAACAATAATCGAAATAGAGGTGGGGAAGGAGGCCAGCGAGTTAGGGCTCCACGTGGTGAAATTGTTGTTCGAATTCGAGTCCGAATCGAAGAAGAAATTGTGCAACCCGAACAACAAGGACAAGCTGACCAGGATTACAAAGTCAAGGCTGAAATTCATTTCTTTTCGGGCAACTTGGGGGTGGAAGATTATCCGGATTGGCAGATTGAAGTGGATAGATTCTTTGAGATCATGGAGGTTCCAAAACACAAGCAAGCTAAGTTGGTTTCTCGGAAGCTAAAGAAGGATGCTGCTTATTGGTGGGATCAATTGCGAGTTCTCGTCGAGGCAAGGAAAAGAGCGTGTTCAAACATGGAGGAAGATGAAAGGTCTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

263

Amino Acids

30.12

Weight (kDa)

9.37

Isoelectric Point (pI)

49.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000291)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00860
fragaria_vesca FvH4_1g23712 FvH4_1g29809 FvH4_1g29810 FvH4_2g02661 FvH4_2g13451 FvH4_2g17921 FvH4_2g17922 FvH4_2g19251 FvH4_2g19252 FvH4_2g28221 FvH4_2g35961 FvH4_3g10372 FvH4_3g12461 FvH4_3g12461 FvH4_3g27861 FvH4_3g34591 FvH4_3g40201 FvH4_3g44612 FvH4_4g08352 FvH4_4g12251 FvH4_4g12742 FvH4_4g13904 FvH4_4g14287 FvH4_4g15243 FvH4_4g24071 FvH4_4g33448 FvH4_5g21912 FvH4_5g39371 FvH4_6g14992 FvH4_6g15221 FvH4_6g20603 FvH4_6g31093 FvH4_6g32372 FvH4_6g33012
malus_domestica MD11G1009100.v1.1 MD13G1145000.v1.1 MD16G1138700.v1.1
prunus_persica Prupe.5G246300_v2.0.a1 Prupe.7G034800_v2.0.a1 Prupe.8G084500_v2.0.a1
pyrus_communis pycom01g18240 pycom04g00330 pycom05g09010 pycom06g01670 pycom06g01690 pycom06g07180 pycom06g11620 pycom10g05720 pycom1134g00040 pycom1134g00060 pycom12486g00010 pycom12555g00230 pycom13g21670 pycom13g23130 pycom13g23140 pycom14g10580
rosa_chinensis RchiOBHm_Chr1g0330691 RchiOBHm_Chr2g0106171 RchiOBHm_Chr2g0134731 RchiOBHm_Chr2g0142791 RchiOBHm_Chr2g0149861 RchiOBHm_Chr3g0452401 RchiOBHm_Chr3g0461881 RchiOBHm_Chr4g0401341 RchiOBHm_Chr5g0075641 RchiOBHm_Chr6g0265961 RchiOBHm_Chr7g0200201 RchiOBHm_Chr7g0237811
rosa_laevigata RLG00000002773
rosa_multiflora Rmu_co8037806.1_g000001 Rmu_co8445989.1_g000001 Rmu_sc0000745.1_g000039 Rmu_sc0004448.1_g000029 Rmu_sc0004488.1_g000002 Rmu_sc0004591.1_g000018 Rmu_sc0005065.1_g000030 Rmu_sc0005150.1_g000005 Rmu_sc0005654.1_g000011 Rmu_sc0006986.1_g000016
rosa_roxburghii Rroxscaffold_164G00436490 Rroxscaffold_175G00432490 Rroxscaffold_1G00059440 Rroxscaffold_1G00064410 Rroxscaffold_2G00100310 Rroxscaffold_2G00128170 Rroxscaffold_3G00239420 Rroxscaffold_3G00264970 Rroxscaffold_3G00271550 Rroxscaffold_4G00300240 Rroxscaffold_5G00385050 Rroxscaffold_6G00399720
rosa_rugosa Rorug02G0252200
rosa_samantha Rh2DG251900 Rh7CG329900
rosa_wichuraiana Rw0G004800 Rw1G000850 Rw1G022350 Rw2G027030 Rw2G027760 Rw2G028410 Rw2G029130 Rw2G029390 Rw2G032490 Rw2G039460 Rw2G047800 Rw2G050340 Rw3G026430 Rw4G018370 Rw4G030750 Rw4G033140 Rw5G011950 Rw5G012010 Rw5G029280 Rw5G040190 Rw5G044570 Rw5G048240 Rw6G000340 Rw6G010140 Rw6G026480 Rw7G033750 Rw7G037250 Rw7G042080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 2 cut(s) 35, 607
AciI CCGC 2 cut(s) 127, 148
AclWI GGATC 1 cut(s) 726
AcsI RAATTY 3 cut(s) 375, 486, 567
AcuI CTGAAG 1 cut(s) 78
AcvI CACGTG 1 cut(s) 467
AdeI CACNNNGTG 2 cut(s) 194, 470
AgsI TTSAA 2 cut(s) 623, 762
AjnI CCWGG 1 cut(s) 543
AluBI AGCT 7 cut(s) 29, 134, 202, 228, 539, 671, 691
AluI AGCT 7 cut(s) 29, 134, 202, 228, 539, 671, 691
AlwI GGATC 1 cut(s) 726
Aor13HI TCCGGA 2 cut(s) 35, 607
AoxI GGCC 1 cut(s) 445
ApeKI GCWGC 2 cut(s) 341, 704
ApoI RAATTY 3 cut(s) 375, 486, 567
AsuHPI GGTGA 3 cut(s) 180, 304, 482
AsuII TTCGAA 2 cut(s) 281, 484
BanII GRGCYC 1 cut(s) 463
BbrPI CACGTG 1 cut(s) 467
BbsI GAAGAC 1 cut(s) 777
BbvI GCAGC 2 cut(s) 328, 691
BccI CCATC 2 cut(s) 35, 353
BceAI ACGGC 1 cut(s) 345
BciT130I CCWGG 1 cut(s) 545
BfaI CTAG 1 cut(s) 30
BglII AGATCT 1 cut(s) 20
BisI GCNGC 3 cut(s) 127, 342, 705
BlsI GCNGC 3 cut(s) 128, 343, 706
Bme1390I CCNGG 1 cut(s) 545
BmiI GGNNCC 2 cut(s) 462, 654
BmrFI CCNGG 1 cut(s) 545
BmsI GCATC 1 cut(s) 691
BpiI GAAGAC 1 cut(s) 777
BpmI CTGGAG 2 cut(s) 9, 30
Bpu14I TTCGAA 2 cut(s) 281, 484
BsaAI YACGTR 1 cut(s) 467
BsaWI WCCGGW 3 cut(s) 35, 250, 607
BsaXI ACNNNNNCTCC 2 cut(s) 65, 95
Bse3DI GCAATG 1 cut(s) 293
BseAI TCCGGA 2 cut(s) 35, 607
BseBI CCWGG 1 cut(s) 545
BseGI GGATG 1 cut(s) 706
BseMI GCAATG 1 cut(s) 293
BseXI GCAGC 2 cut(s) 328, 691
BshFI GGCC 1 cut(s) 447
BsiSI CCGG 3 cut(s) 36, 251, 608
BsnI GGCC 1 cut(s) 447
Bsp119I TTCGAA 2 cut(s) 281, 484
Bsp1286I GDGCHC 1 cut(s) 463
Bsp13I TCCGGA 2 cut(s) 35, 607
Bsp143I GATC 3 cut(s) 20, 642, 718
BspACI CCGC 2 cut(s) 127, 148
BspANI GGCC 1 cut(s) 447
BspEI TCCGGA 2 cut(s) 35, 607
BspLI GGNNCC 2 cut(s) 462, 654
BspPI GGATC 1 cut(s) 726
BspQI GCTCTTC 1 cut(s) 252
BspT104I TTCGAA 2 cut(s) 281, 484
BsrDI GCAATG 1 cut(s) 293
BssMI GATC 3 cut(s) 20, 642, 718
Bst2UI CCWGG 1 cut(s) 545
Bst6I CTCTTC 3 cut(s) 54, 160, 252
BstBAI YACGTR 1 cut(s) 467
BstBI TTCGAA 2 cut(s) 281, 484
BstC8I GCNNGC 2 cut(s) 449, 669
BstDEI CTNAG 1 cut(s) 672
BstEII GGTNACC 1 cut(s) 186
BstF5I GGATG 1 cut(s) 706
BstKTI GATC 3 cut(s) 23, 645, 721
BstMBI GATC 3 cut(s) 20, 642, 718
BstMWI GCNNNNNNNGC 1 cut(s) 338
BstNI CCWGG 1 cut(s) 545
BstPI GGTNACC 1 cut(s) 186
BstSCI CCNGG 1 cut(s) 543
BstV1I GCAGC 2 cut(s) 328, 691
BstV2I GAAGAC 1 cut(s) 777
BstX2I RGATCY 1 cut(s) 20
BstYI RGATCY 1 cut(s) 20
BsuRI GGCC 1 cut(s) 447
BtgZI GCGATG 1 cut(s) 322
BtsCI GGATG 1 cut(s) 706
Cac8I GCNNGC 2 cut(s) 449, 669
CviAII CATG 3 cut(s) 355, 646, 766
DdeI CTNAG 1 cut(s) 672
DpnI GATC 3 cut(s) 22, 644, 720
DpnII GATC 3 cut(s) 20, 642, 718
DraIII CACNNNGTG 2 cut(s) 194, 470
Eam1104I CTCTTC 3 cut(s) 54, 160, 252
EarI CTCTTC 3 cut(s) 54, 160, 252
Eco24I GRGCYC 1 cut(s) 463
Eco32I GATATC 1 cut(s) 313
Eco57I CTGAAG 1 cut(s) 78
Eco72I CACGTG 1 cut(s) 467
Eco91I GGTNACC 1 cut(s) 186
EcoO65I GGTNACC 1 cut(s) 186
EcoRI GAATTC 1 cut(s) 486
EcoRII CCWGG 1 cut(s) 543
EcoRV GATATC 1 cut(s) 313
EcoT38I GRGCYC 1 cut(s) 463
FaeI CATG 3 cut(s) 358, 649, 769
FaiI YATR 6 cut(s) 84, 112, 114, 356, 647, 767
FalI AAGNNNNNCTT 1 cut(s) 772
FatI CATG 3 cut(s) 354, 645, 765
Fnu4HI GCNGC 3 cut(s) 127, 342, 705
FokI GGATG 1 cut(s) 713
FriOI GRGCYC 1 cut(s) 463
Fsp4HI GCNGC 3 cut(s) 127, 342, 705
FspBI CTAG 1 cut(s) 30
GluI GCNGC 3 cut(s) 127, 342, 705
GsuI CTGGAG 2 cut(s) 9, 30
HaeIII GGCC 1 cut(s) 447
HapII CCGG 3 cut(s) 36, 251, 608
Hin1II CATG 3 cut(s) 358, 649, 769
HincII GTYRAC 1 cut(s) 88
HindII GTYRAC 1 cut(s) 88
HinfI GANTC 7 cut(s) 14, 169, 205, 236, 492, 498, 633
HpaII CCGG 3 cut(s) 36, 251, 608
HphI GGTGA 3 cut(s) 180, 304, 482
Hpy166II GTNNAC 1 cut(s) 88
Hpy188I TCNGA 4 cut(s) 168, 210, 497, 687
Hpy188III TCNNGA 5 cut(s) 18, 36, 71, 173, 608
Hpy8I GTNNAC 1 cut(s) 88
Hpy99I CGWCG 1 cut(s) 740
HpyAV CCTTC 3 cut(s) 205, 434, 691
HpyCH4IV ACGT 1 cut(s) 466
HpyCH4V TGCA 1 cut(s) 517
HpyF10VI GCNNNNNNNGC 1 cut(s) 338
HpyF3I CTNAG 1 cut(s) 672
HpySE526I ACGT 1 cut(s) 466
Hsp92II CATG 3 cut(s) 358, 649, 769
Kpn2I TCCGGA 2 cut(s) 35, 607
Kzo9I GATC 3 cut(s) 20, 642, 718
LguI GCTCTTC 1 cut(s) 252
LmnI GCTCC 1 cut(s) 466
LpnPI CCDG 9 cut(s) 39, 49, 186, 205, 264, 461, 530, 557, 621
Lsp1109I GCAGC 2 cut(s) 328, 691
LweI GCATC 1 cut(s) 691
MaeI CTAG 1 cut(s) 30
MaeII ACGT 1 cut(s) 466
MaeIII GTNAC 2 cut(s) 186, 297
MalI GATC 3 cut(s) 22, 644, 720
MboI GATC 3 cut(s) 20, 642, 718
MboII GAAGA 9 cut(s) 63, 71, 147, 239, 515, 518, 611, 777, 785
MfeI CAATTG 1 cut(s) 722
MflI RGATCY 1 cut(s) 20
MhlI GDGCHC 1 cut(s) 463
MluCI AATT 7 cut(s) 349, 375, 474, 486, 510, 567, 722
MlyI GAGTC 4 cut(s) 163, 199, 245, 501
MnlI CCTC 9 cut(s) 41, 55, 59, 390, 425, 437, 643, 733, 763
MroI TCCGGA 2 cut(s) 35, 607
MseI TTAA 1 cut(s) 790
MspI CCGG 3 cut(s) 36, 251, 608
MspR9I CCNGG 1 cut(s) 545
MunI CAATTG 1 cut(s) 722
MvaI CCWGG 1 cut(s) 545
MwoI GCNNNNNNNGC 1 cut(s) 338
NdeII GATC 3 cut(s) 20, 642, 718
NlaIII CATG 3 cut(s) 358, 649, 769
NlaIV GGNNCC 2 cut(s) 462, 654
NmuCI GTSAC 1 cut(s) 186
NspV TTCGAA 2 cut(s) 281, 484
PciSI GCTCTTC 1 cut(s) 252
PfeI GAWTC 3 cut(s) 14, 498, 633
PflFI GACNNNGTC 1 cut(s) 235
PkrI GCNGC 3 cut(s) 128, 343, 706
PleI GAGTC 4 cut(s) 163, 199, 244, 500
PmaCI CACGTG 1 cut(s) 467
PmlI CACGTG 1 cut(s) 467
PpsI GAGTC 4 cut(s) 163, 199, 244, 500
Ppu21I YACGTR 1 cut(s) 467
Psp6I CCWGG 1 cut(s) 543
PspCI CACGTG 1 cut(s) 467
PspEI GGTNACC 1 cut(s) 186
PspGI CCWGG 1 cut(s) 543
PspN4I GGNNCC 2 cut(s) 462, 654
PsuI RGATCY 1 cut(s) 20
PsyI GACNNNGTC 1 cut(s) 235
SapI GCTCTTC 1 cut(s) 252
SaqAI TTAA 1 cut(s) 790
SatI GCNGC 3 cut(s) 127, 342, 705
Sau3AI GATC 3 cut(s) 20, 642, 718
SchI GAGTC 4 cut(s) 163, 199, 245, 501
ScrFI CCNGG 1 cut(s) 545
SduI GDGCHC 1 cut(s) 463
SfaNI GCATC 1 cut(s) 691
SfuI TTCGAA 2 cut(s) 281, 484
Sse9I AATT 7 cut(s) 349, 375, 474, 486, 510, 567, 722
SsiI CCGC 2 cut(s) 127, 148
SspMI CTAG 1 cut(s) 30
StyD4I CCNGG 1 cut(s) 543
TaiI ACGT 1 cut(s) 469
TaqI TCGA 7 cut(s) 281, 315, 424, 484, 490, 501, 738
TaqII GACCGA 1 cut(s) 174
TasI AATT 7 cut(s) 349, 375, 474, 486, 510, 567, 722
TauI GCSGC 1 cut(s) 129
TfiI GAWTC 3 cut(s) 14, 498, 633
Tru1I TTAA 1 cut(s) 790
Tru9I TTAA 1 cut(s) 790
TseFI GTSAC 1 cut(s) 186
TseI GCWGC 2 cut(s) 341, 704
Tsp45I GTSAC 1 cut(s) 186
TspDTI ATGAA 5 cut(s) 147, 325, 371, 560, 792
TspGWI ACGGA 1 cut(s) 248
Tth111I GACNNNGTC 1 cut(s) 235
XapI RAATTY 3 cut(s) 375, 486, 567
XspI CTAG 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.