RchiOBHm_Chr3g0461881
ERF Family

DNA RNA polymerases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000291
Physical Location & Seq
Reverse (-)
9811226 .. 9813762
2537 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42827

Sequence Viewer

Length: 2202 bp
ATGCAGCCGCAAGCGGCTGCAGAACGCATCTTTCAACTTTTAATCAATATAATAGAGATTTTCTCTTTTATCTCTGGTGGACTCCAGAATCTTTTGCTTAGGTTTATTGCTGGTAAACCTAGTTATCAATCCGACTGCGTCAGGTGGTATCAGAGCAGGTCTTCCCTGTCTCTTTTATTTGCCTTAGTAGCAATGGGTGAAGTTACGAAATCTGATATTGAAGCTCTTACAGCAGCGTTTACCGCTGCCATCAATTCCATGAATAATCAGATTGGAGAAATTCGTGGATTGTTGGGCGAGAGGAACAACAACAACAATAATCGGCGTAGAGATGGGGAAGGAGGCCAGCGAGTTAGGGCTCCACGTGGTGAAGTTGTTGATAATACATCAGAATCTGAGCCTGAAGAAGAAATTTTACAACAAGAGCAACATGGACAAGCTGACCAGGATTACAAAGTCAAGGCCGAAATTCCTTTCTTTTCGGGCAATTTGGGTGTAGAAGATTATTTGGATTGGCAGCTTCAGGTGGACAGATTCTTTGAGATTATGGAAGTGCCTGAACACAAGCAAGTTAAGCATGTTGCCTGGAGATTGAAGAGTACTGCTGCAGTATGGTGGGATAAGTTGCAGAACACTCGAAAGAAGCAGAGGAAGCAGGGTGTTAGAACGTGGCGAAGAATGAAGCAGTTGATGATGGAGAGGTTCTTGCCCGATGATTATGAGCAGATTCTATATAGGTTGTATATTGAATGTGTCCAGGGAACTAGGACAGTGGCTGATTATACGGCTGAGTTCTTACGCTATTCAGAGCGTAATGAATTGGGAGAGACTGAAGGCCAGAAGGTGGCTCACTATATCAGTGGGCTGAAGCCTTCCATTCAGGAGAGAATTGGGTTACAAACTGTTCATACTATGGCCGAAGTGACAAACCTAGCATTGAAAGCAGAGTTGTTGGAGAAACCTTCACGAGCTTCTTCTTTCCAGAGGTATAACTACCAAAGGAGTGCAGATTTGGTTAATGCCTCAACTGCCAAGGGTATAACTACGCTGCAGAGAGCAGAAAACGCCTTTAAAGCTTCTAATCCTCCTTTTAAAGGCGCGGGCAGTTCTAACACTTCTAGTGGTGTTCAAAATAGAGCCCCGAATCAGAGGTTCAATAATCCTTATGCTAGACCTACAGGAGATGTCTGTTATCGATGCAACAAGCCTGGGCATAGATCTAATATGCGTCATGAGAGGAGACAAACTGCCCTTATAGATGATTATGATGAGGATGAAGAAGAAGTTAGGAGAGATGGCGATTATGATGGAGCTGAGTTTGCGGAGGAGGAATCTCCTGAGAAGGTTAACATTGTGTTGCAGCGGGTTCTACTATGTCCTAAAGAAGAGGGGCAGCGGCGCAATATTTTCAGGTCACTTTGTTCCATTAATAACAAAGTGTGTAATTTAATTGTGGATAATGGGAGCTGCGAAAATTTTGTAGCCAAGAAACTGGTGGAGTATTTGCAGTTACCGGCGCAGCCTCATGAGGCACCTTATTCCCTCGAGTGGGTCAAGAAAGGTCCACAAGTTCGAGTTGTTGAATCCTGCAAAGTGCCGGTATCCATTGGTAAGCATTATAAAGATGAAGTTTTGTGCGACATTATTGATATGGATGCTTGTCATATTTTGTTTGGCCGACCTTGGCAATATGATGTGGATGTTACTTATAAAGGCAGGGACAATGTGATGTTGTTTATGTGGAATAACCATAAAATTGCTATGGCTCATGTGTGTCAATTTGAGAAATCTGATGTGAAGAAAGGGGAGAGTTTCCTGACCTTATCTAGCAGTGAACTTGAGATGGAGAGGGCCTTTAAAGAATCTGAGGTTTTCTGTCCAGTGGTGATAAAGGGGTTGTTGTCTGCAGAAAAGGAAGAAGTGGTGATTCCCAAAGAAGTACAGGACATGTTGGGAGATTTTGAAGAGTTGATCTCGGATGAGTTGCCCAACGAGCTGCCACCTATGAGAGACATTCAACATCAGATTGATTTGGTGCCTGGAGCTAGCTTGCCCAATCTGCCACATTACCGAATGAGTCCCAAGGAGAATGAGATTTTGAGAGAGCAGATTGAAGACTTGTTGAAAAAAGGGTTCATTCGAGAGAGTATGAGTCCTTGTGCAGTTCCAGTCCTCCTTGTTCCTAAGAAGGGCAATCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 Retrotrans_gag rve zf-H2C2

Protein Analysis

733

Amino Acids

83.92

Weight (kDa)

5.8

Isoelectric Point (pI)

52.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ty3_capsid PF19259 181 - 319 1.4e-07 Ty3 transposon capsid-like protein
Retrotrans_gag PF03732 193 - 291 1.1e-12 Retrotransposon gag protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000291)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00860
fragaria_vesca FvH4_1g23712 FvH4_1g29809 FvH4_1g29810 FvH4_2g02661 FvH4_2g13451 FvH4_2g17921 FvH4_2g17922 FvH4_2g19251 FvH4_2g19252 FvH4_2g28221 FvH4_2g35961 FvH4_3g10372 FvH4_3g12461 FvH4_3g12461 FvH4_3g27861 FvH4_3g34591 FvH4_3g40201 FvH4_3g44612 FvH4_4g08352 FvH4_4g12251 FvH4_4g12742 FvH4_4g13904 FvH4_4g14287 FvH4_4g15243 FvH4_4g24071 FvH4_4g33448 FvH4_5g21912 FvH4_5g39371 FvH4_6g14992 FvH4_6g15221 FvH4_6g20603 FvH4_6g31093 FvH4_6g32372 FvH4_6g33012
malus_domestica MD11G1009100.v1.1 MD13G1145000.v1.1 MD16G1138700.v1.1
prunus_persica Prupe.5G246300_v2.0.a1 Prupe.7G034800_v2.0.a1 Prupe.8G084500_v2.0.a1
pyrus_communis pycom01g18240 pycom04g00330 pycom05g09010 pycom06g01670 pycom06g01690 pycom06g07180 pycom06g11620 pycom10g05720 pycom1134g00040 pycom1134g00060 pycom12486g00010 pycom12555g00230 pycom13g21670 pycom13g23130 pycom13g23140 pycom14g10580
rosa_chinensis RchiOBHm_Chr1g0330691 RchiOBHm_Chr2g0106171 RchiOBHm_Chr2g0134731 RchiOBHm_Chr2g0142791 RchiOBHm_Chr2g0149861 RchiOBHm_Chr3g0452401 RchiOBHm_Chr3g0461881 RchiOBHm_Chr4g0401341 RchiOBHm_Chr5g0075641 RchiOBHm_Chr6g0265961 RchiOBHm_Chr7g0200201 RchiOBHm_Chr7g0237811
rosa_laevigata RLG00000002773
rosa_multiflora Rmu_co8037806.1_g000001 Rmu_co8445989.1_g000001 Rmu_sc0000745.1_g000039 Rmu_sc0004448.1_g000029 Rmu_sc0004488.1_g000002 Rmu_sc0004591.1_g000018 Rmu_sc0005065.1_g000030 Rmu_sc0005150.1_g000005 Rmu_sc0005654.1_g000011 Rmu_sc0006986.1_g000016
rosa_roxburghii Rroxscaffold_164G00436490 Rroxscaffold_175G00432490 Rroxscaffold_1G00059440 Rroxscaffold_1G00064410 Rroxscaffold_2G00100310 Rroxscaffold_2G00128170 Rroxscaffold_3G00239420 Rroxscaffold_3G00264970 Rroxscaffold_3G00271550 Rroxscaffold_4G00300240 Rroxscaffold_5G00385050 Rroxscaffold_6G00399720
rosa_rugosa Rorug02G0252200
rosa_samantha Rh2DG251900 Rh7CG329900
rosa_wichuraiana Rw0G004800 Rw1G000850 Rw1G022350 Rw2G027030 Rw2G027760 Rw2G028410 Rw2G029130 Rw2G029390 Rw2G032490 Rw2G039460 Rw2G047800 Rw2G050340 Rw3G026430 Rw4G018370 Rw4G030750 Rw4G033140 Rw5G011950 Rw5G012010 Rw5G029280 Rw5G040190 Rw5G044570 Rw5G048240 Rw6G000340 Rw6G010140 Rw6G026480 Rw7G033750 Rw7G037250 Rw7G042080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1620, 1710
Acc36I ACCTGC 1 cut(s) 147
AccB1I GGYRCC 2 cut(s) 1531, 2035
AccB7I CCANNNNNTGG 1 cut(s) 844
AccII CGCG 1 cut(s) 1100
AciI CCGC 7 cut(s) 8, 14, 243, 1100, 1322, 1363, 1396
AcoI YGGCCR 2 cut(s) 915, 1675
AcsI RAATTY 4 cut(s) 279, 411, 468, 1474
AcuI CTGAAG 4 cut(s) 423, 506, 852, 887
AcvI CACGTG 1 cut(s) 365
AdeI CACNNNGTG 1 cut(s) 368
AfaI GTAC 2 cut(s) 601, 1941
AfiI CCNNNNNNNGG 5 cut(s) 844, 1094, 1548, 1549, 2189
AflIII ACRYGT 1 cut(s) 1947
AjnI CCWGG 5 cut(s) 444, 584, 756, 1207, 2038
Alw26I GTCTC 4 cut(s) 174, 821, 1234, 2004
AlwNI CAGNNNCTG 2 cut(s) 395, 776
Ama87I CYCGRG 1 cut(s) 1544
AoxI GGCC 6 cut(s) 343, 462, 835, 915, 1675, 1851
ApoI RAATTY 4 cut(s) 279, 411, 468, 1474
ArsI GACNNNNNNTTYG 2 cut(s) 521, 553
AseI ATTAAT 1 cut(s) 1428
AspLEI GCGC 3 cut(s) 1100, 1401, 1519
AspS9I GGNCC 2 cut(s) 1562, 1851
AsuHPI GGTGA 4 cut(s) 209, 380, 1897, 1936
AsuNHI GCTAGC 1 cut(s) 2045
AvaI CYCGRG 1 cut(s) 1544
AvaII GGWCC 1 cut(s) 1562
BanI GGYRCC 2 cut(s) 1531, 2035
BanII GRGCYC 2 cut(s) 361, 1141
BarI GAAGNNNNNNTAC 2 cut(s) 399, 431
BauI CACGAG 1 cut(s) 966
BbrPI CACGTG 1 cut(s) 365
BbsI GAAGAC 2 cut(s) 153, 2121
BccI CCATC 6 cut(s) 257, 326, 688, 1289, 1301, 1837
BceAI ACGGC 1 cut(s) 801
BcgI CGANNNNNNTGC 2 cut(s) 617, 651
BciT130I CCWGG 5 cut(s) 446, 586, 758, 1209, 2040
BciVI GTATCC 1 cut(s) 1612
BcoDI GTCTC 4 cut(s) 174, 821, 1234, 2004
BfaI CTAG 7 cut(s) 120, 765, 932, 1119, 1170, 1827, 2046
BfmI CTRYAG 5 cut(s) 18, 606, 1049, 1176, 1905
BfuAI ACCTGC 1 cut(s) 147
BfuI GTATCC 1 cut(s) 1612
BglII AGATCT 1 cut(s) 1217
BmcAI AGTACT 1 cut(s) 601
Bme1390I CCNGG 5 cut(s) 446, 586, 758, 1209, 2040
Bme18I GGWCC 1 cut(s) 1562
BmeT110I CYCGRG 1 cut(s) 1544
BmgT120I GGNCC 2 cut(s) 1562, 1851
BmiI GGNNCC 3 cut(s) 360, 1533, 2037
BmrFI CCNGG 5 cut(s) 446, 586, 758, 1209, 2040
BmsI GCATC 3 cut(s) 36, 1187, 1645
BmtI GCTAGC 1 cut(s) 2049
BpiI GAAGAC 2 cut(s) 153, 2121
BplI GAGNNNNNCTC 4 cut(s) 47, 79, 1958, 1990
BpmI CTGGAG 3 cut(s) 68, 607, 2061
Bpu10I CCTNAGC 1 cut(s) 98
BpuEI CTTGAG 1 cut(s) 1859
Bsa29I ATCGAT 1 cut(s) 1195
BsaAI YACGTR 1 cut(s) 365
BsaJI CCNNGG 5 cut(s) 757, 1032, 1208, 1682, 2082
Bsc4I CCNNNNNNNGG 5 cut(s) 844, 1094, 1548, 1549, 2189
Bse118I RCCGGY 2 cut(s) 1513, 1597
Bse1I ACTGG 3 cut(s) 1497, 1880, 2168
Bse3DI GCAATG 1 cut(s) 198
BseBI CCWGG 5 cut(s) 446, 586, 758, 1209, 2040
BseCI ATCGAT 1 cut(s) 1195
BseDI CCNNGG 5 cut(s) 757, 1032, 1208, 1682, 2082
BseGI GGATG 4 cut(s) 1279, 1660, 1705, 1984
BseLI CCNNNNNNNGG 5 cut(s) 844, 1094, 1548, 1549, 2189
BseMI GCAATG 1 cut(s) 198
BseMII CTCAG 5 cut(s) 387, 780, 1305, 1329, 1857
BseNI ACTGG 3 cut(s) 1497, 1880, 2168
BseRI GAGGAG 2 cut(s) 1252, 1340
BsgI GTGCAG 2 cut(s) 1026, 2181
Bsh1236I CGCG 1 cut(s) 1100
BshFI GGCC 6 cut(s) 345, 464, 837, 917, 1677, 1853
BshNI GGYRCC 2 cut(s) 1531, 2035
BshVI ATCGAT 1 cut(s) 1195
BsiHKCI CYCGRG 1 cut(s) 1544
BsiSI CCGG 2 cut(s) 1514, 1598
BslFI GGGAC 2 cut(s) 1733, 2064
BslI CCNNNNNNNGG 5 cut(s) 844, 1094, 1548, 1549, 2189
BsmAI GTCTC 4 cut(s) 174, 821, 1234, 2004
BsmFI GGGAC 2 cut(s) 1733, 2064
BsnI GGCC 6 cut(s) 345, 464, 837, 917, 1677, 1853
BsoBI CYCGRG 1 cut(s) 1544
Bsp1286I GDGCHC 2 cut(s) 361, 1141
Bsp143I GATC 2 cut(s) 1217, 1971
BspACI CCGC 7 cut(s) 8, 14, 243, 1100, 1322, 1363, 1396
BspANI GGCC 6 cut(s) 345, 464, 837, 917, 1677, 1853
BspCNI CTCAG 5 cut(s) 388, 781, 1306, 1330, 1858
BspDI ATCGAT 1 cut(s) 1195
BspFNI CGCG 1 cut(s) 1100
BspHI TCATGA 2 cut(s) 1231, 1525
BspLI GGNNCC 3 cut(s) 360, 1533, 2037
BspMAI CTGCAG 4 cut(s) 22, 610, 1053, 1909
BspMI ACCTGC 1 cut(s) 147
BspOI GCTAGC 1 cut(s) 2049
BspT107I GGYRCC 2 cut(s) 1531, 2035
BsrDI GCAATG 1 cut(s) 198
BsrFI RCCGGY 2 cut(s) 1513, 1597
BsrI ACTGG 3 cut(s) 1497, 1880, 2168
BssAI RCCGGY 2 cut(s) 1513, 1597
BssECI CCNNGG 5 cut(s) 757, 1032, 1208, 1682, 2082
BssMI GATC 2 cut(s) 1217, 1971
BssSI CACGAG 1 cut(s) 966
BssT1I CCWWGG 3 cut(s) 1032, 1682, 2082
Bst2BI CACGAG 1 cut(s) 966
Bst2UI CCWGG 5 cut(s) 446, 586, 758, 1209, 2040
Bst4CI ACNGT 2 cut(s) 772, 904
Bst6I CTCTTC 3 cut(s) 590, 1380, 1959
BstBAI YACGTR 1 cut(s) 365
BstC8I GCNNGC 5 cut(s) 12, 347, 1102, 2047, 2051
BstDEI CTNAG 8 cut(s) 98, 184, 396, 789, 1314, 1338, 1866, 2184
BstENI CCTNNNNNAGG 1 cut(s) 1092
BstF5I GGATG 4 cut(s) 1279, 1660, 1705, 1984
BstFNI CGCG 1 cut(s) 1100
BstHHI GCGC 3 cut(s) 1100, 1401, 1519
BstKTI GATC 2 cut(s) 1220, 1974
BstMAI GTCTC 4 cut(s) 174, 821, 1234, 2004
BstMBI GATC 2 cut(s) 1217, 1971
BstNI CCWGG 5 cut(s) 446, 586, 758, 1209, 2040
BstNSI RCATGY 2 cut(s) 581, 1951
BstSCI CCNGG 5 cut(s) 444, 584, 756, 1207, 2038
BstSFI CTRYAG 5 cut(s) 18, 606, 1049, 1176, 1905
BstUI CGCG 1 cut(s) 1100
BstV2I GAAGAC 2 cut(s) 153, 2121
BstX2I RGATCY 1 cut(s) 1217
BstXI CCANNNNNNTGG 1 cut(s) 1492
BstYI RGATCY 1 cut(s) 1217
Bsu15I ATCGAT 1 cut(s) 1195
BsuI GTATCC 1 cut(s) 1612
BsuRI GGCC 6 cut(s) 345, 464, 837, 917, 1677, 1853
BsuTUI ATCGAT 1 cut(s) 1195
BtsCI GGATG 4 cut(s) 1279, 1660, 1705, 1984
BtsI GCAGTG 1 cut(s) 1837
BtsIMutI CAGTG 4 cut(s) 777, 865, 1837, 1887
BveI ACCTGC 1 cut(s) 147
Cac8I GCNNGC 5 cut(s) 12, 347, 1102, 2047, 2051
CaiI CAGNNNCTG 2 cut(s) 395, 776
CciI TCATGA 2 cut(s) 1231, 1525
CfoI GCGC 3 cut(s) 1100, 1401, 1519
Cfr10I RCCGGY 2 cut(s) 1513, 1597
Cfr13I GGNCC 2 cut(s) 1562, 1851
ClaI ATCGAT 1 cut(s) 1195
CseI GACGC 2 cut(s) 127, 1217
Csp6I GTAC 2 cut(s) 600, 1940
CviAII CATG 7 cut(s) 259, 431, 578, 1232, 1526, 1769, 1948
CviQI GTAC 2 cut(s) 600, 1940
DdeI CTNAG 8 cut(s) 98, 184, 396, 789, 1314, 1338, 1866, 2184
DpnI GATC 2 cut(s) 1219, 1973
DpnII GATC 2 cut(s) 1217, 1971
DraI TTTAAA 3 cut(s) 1072, 1093, 1858
DraIII CACNNNGTG 1 cut(s) 368
EaeI YGGCCR 2 cut(s) 915, 1675
Eam1104I CTCTTC 3 cut(s) 590, 1380, 1959
EarI CTCTTC 3 cut(s) 590, 1380, 1959
Eco130I CCWWGG 3 cut(s) 1032, 1682, 2082
Eco24I GRGCYC 2 cut(s) 361, 1141
Eco47I GGWCC 1 cut(s) 1562
Eco57I CTGAAG 4 cut(s) 423, 506, 852, 887
Eco72I CACGTG 1 cut(s) 365
Eco88I CYCGRG 1 cut(s) 1544
EcoNI CCTNNNNNAGG 1 cut(s) 1092
EcoO109I RGGNCCY 1 cut(s) 1851
EcoRII CCWGG 5 cut(s) 444, 584, 756, 1207, 2038
EcoT14I CCWWGG 3 cut(s) 1032, 1682, 2082
EcoT38I GRGCYC 2 cut(s) 361, 1141
ErhI CCWWGG 3 cut(s) 1032, 1682, 2082
FaeI CATG 7 cut(s) 262, 434, 581, 1235, 1529, 1772, 1951
FaqI GGGAC 2 cut(s) 1733, 2064
FatI CATG 7 cut(s) 258, 430, 577, 1231, 1525, 1768, 1947
FauI CCCGC 2 cut(s) 1093, 1356
FokI GGATG 4 cut(s) 1286, 1667, 1712, 1991
FriOI GRGCYC 2 cut(s) 361, 1141
FspBI CTAG 7 cut(s) 120, 765, 932, 1119, 1170, 1827, 2046
GlaI GCGC 3 cut(s) 1099, 1400, 1518
GsuI CTGGAG 3 cut(s) 68, 607, 2061
HaeIII GGCC 6 cut(s) 345, 464, 837, 917, 1677, 1853
HapII CCGG 2 cut(s) 1514, 1598
HgaI GACGC 2 cut(s) 127, 1217
HhaI GCGC 3 cut(s) 1100, 1401, 1519
Hin1II CATG 7 cut(s) 262, 434, 581, 1235, 1529, 1772, 1951
Hin6I GCGC 3 cut(s) 1098, 1399, 1517
HinP1I GCGC 3 cut(s) 1098, 1399, 1517
HincII GTYRAC 1 cut(s) 1348
HindII GTYRAC 1 cut(s) 1348
HindIII AAGCTT 1 cut(s) 1074
HpaI GTTAAC 1 cut(s) 1348
HpaII CCGG 2 cut(s) 1514, 1598
HphI GGTGA 4 cut(s) 209, 380, 1897, 1936
Hpy166II GTNNAC 7 cut(s) 80, 116, 240, 529, 1348, 1565, 1835
Hpy8I GTNNAC 7 cut(s) 80, 116, 240, 529, 1348, 1565, 1835
HpyAV CCTTC 7 cut(s) 332, 827, 835, 882, 972, 1336, 2182
HpyCH4III ACNGT 2 cut(s) 772, 904
HpyCH4IV ACGT 2 cut(s) 364, 668
HpyF3I CTNAG 8 cut(s) 98, 184, 396, 789, 1314, 1338, 1866, 2184
HpySE526I ACGT 2 cut(s) 364, 668
Hsp92II CATG 7 cut(s) 262, 434, 581, 1235, 1529, 1772, 1951
HspAI GCGC 3 cut(s) 1098, 1399, 1517
KspAI GTTAAC 1 cut(s) 1348
Kzo9I GATC 2 cut(s) 1217, 1971
LmnI GCTCC 4 cut(s) 364, 1310, 1464, 2042
LweI GCATC 3 cut(s) 36, 1187, 1645
MaeI CTAG 7 cut(s) 120, 765, 932, 1119, 1170, 1827, 2046
MaeII ACGT 2 cut(s) 364, 668
MaeIII GTNAC 6 cut(s) 202, 894, 922, 1413, 1509, 1702
MalI GATC 2 cut(s) 1219, 1973
MboI GATC 2 cut(s) 1217, 1971
MflI RGATCY 1 cut(s) 1217
MhlI GDGCHC 2 cut(s) 361, 1141
MlyI GAGTC 3 cut(s) 75, 2086, 2161
MmeI TCCRAC 2 cut(s) 156, 933
MseI TTAA 9 cut(s) 41, 573, 1017, 1071, 1092, 1347, 1428, 1448, 1857
MspA1I CMGCKG 3 cut(s) 245, 1363, 1396
MspI CCGG 2 cut(s) 1514, 1598
MspR9I CCNGG 5 cut(s) 446, 586, 758, 1209, 2040
MvaI CCWGG 5 cut(s) 446, 586, 758, 1209, 2040
MvnI CGCG 1 cut(s) 1100
NdeII GATC 2 cut(s) 1217, 1971
NheI GCTAGC 1 cut(s) 2045
NlaIII CATG 7 cut(s) 262, 434, 581, 1235, 1529, 1772, 1951
NlaIV GGNNCC 3 cut(s) 360, 1533, 2037
NmuCI GTSAC 2 cut(s) 922, 1413
NspI RCATGY 2 cut(s) 581, 1951
PaeR7I CTCGAG 1 cut(s) 1544
PagI TCATGA 2 cut(s) 1231, 1525
PciI ACATGT 1 cut(s) 1947
PfeI GAWTC 9 cut(s) 88, 392, 534, 727, 1144, 1331, 1583, 1862, 1927
PflFI GACNNNGTC 1 cut(s) 137
PflMI CCANNNNNTGG 1 cut(s) 844
PleI GAGTC 3 cut(s) 75, 2085, 2160
PmaCI CACGTG 1 cut(s) 365
PmlI CACGTG 1 cut(s) 365
PpsI GAGTC 3 cut(s) 75, 2085, 2160
Ppu21I YACGTR 1 cut(s) 365
PscI ACATGT 1 cut(s) 1947
PshBI ATTAAT 1 cut(s) 1428
PsiI TTATAA 2 cut(s) 1620, 1710
Psp6I CCWGG 5 cut(s) 444, 584, 756, 1207, 2038
PspCI CACGTG 1 cut(s) 365
PspGI CCWGG 5 cut(s) 444, 584, 756, 1207, 2038
PspN4I GGNNCC 3 cut(s) 360, 1533, 2037
PspPI GGNCC 2 cut(s) 1562, 1851
PspXI VCTCGAGB 1 cut(s) 1544
PstI CTGCAG 4 cut(s) 22, 610, 1053, 1909
PstNI CAGNNNCTG 2 cut(s) 395, 776
PsuI RGATCY 1 cut(s) 1217
PsyI GACNNNGTC 1 cut(s) 137
RsaI GTAC 2 cut(s) 601, 1941
RsaNI GTAC 2 cut(s) 600, 1940
SaqAI TTAA 9 cut(s) 41, 573, 1017, 1071, 1092, 1347, 1428, 1448, 1857
Sau3AI GATC 2 cut(s) 1217, 1971
Sau96I GGNCC 2 cut(s) 1562, 1851
ScaI AGTACT 1 cut(s) 601
SchI GAGTC 3 cut(s) 75, 2086, 2161
ScrFI CCNGG 5 cut(s) 446, 586, 758, 1209, 2040
SduI GDGCHC 2 cut(s) 361, 1141
SfaNI GCATC 3 cut(s) 36, 1187, 1645
SfcI CTRYAG 5 cut(s) 18, 606, 1049, 1176, 1905
Sfr274I CTCGAG 1 cut(s) 1544
SinI GGWCC 1 cut(s) 1562
SlaI CTCGAG 1 cut(s) 1544
SmlI CTYRAG 2 cut(s) 1544, 1838
SmoI CTYRAG 2 cut(s) 1544, 1838
SsiI CCGC 7 cut(s) 8, 14, 243, 1100, 1322, 1363, 1396
SspI AATATT 1 cut(s) 1405
SspMI CTAG 7 cut(s) 120, 765, 932, 1119, 1170, 1827, 2046
StyD4I CCNGG 5 cut(s) 444, 584, 756, 1207, 2038
StyI CCWWGG 3 cut(s) 1032, 1682, 2082
TaaI ACNGT 2 cut(s) 772, 904
TaiI ACGT 2 cut(s) 367, 671
TaqI TCGA 5 cut(s) 637, 1195, 1545, 1573, 2140
TatI WGTACW 2 cut(s) 599, 1939
TauI GCSGC 3 cut(s) 10, 17, 1399
TfiI GAWTC 9 cut(s) 88, 392, 534, 727, 1144, 1331, 1583, 1862, 1927
Tru1I TTAA 9 cut(s) 41, 573, 1017, 1071, 1092, 1347, 1428, 1448, 1857
Tru9I TTAA 9 cut(s) 41, 573, 1017, 1071, 1092, 1347, 1428, 1448, 1857
TscAI CASTG 4 cut(s) 777, 865, 1837, 1887
TseFI GTSAC 2 cut(s) 922, 1413
Tsp45I GTSAC 2 cut(s) 922, 1413
TspDTI ATGAA 7 cut(s) 275, 695, 831, 896, 1290, 1641, 2125
TspRI CASTG 4 cut(s) 777, 865, 1837, 1887
Tth111I GACNNNGTC 1 cut(s) 137
Van91I CCANNNNNTGG 1 cut(s) 844
VpaK11BI GGWCC 1 cut(s) 1562
VspI ATTAAT 1 cut(s) 1428
XagI CCTNNNNNAGG 1 cut(s) 1092
XapI RAATTY 4 cut(s) 279, 411, 468, 1474
XceI RCATGY 2 cut(s) 581, 1951
XcmI CCANNNNNNNNNTGG 1 cut(s) 1492
XhoI CTCGAG 1 cut(s) 1544
XspI CTAG 7 cut(s) 120, 765, 932, 1119, 1170, 1827, 2046
ZrmI AGTACT 1 cut(s) 601
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.