Rmu_sc0005654.1_g000011

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005654.1
OG0000291
Physical Location & Seq
Forward (+)
57187 .. 57483
297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005654.1_g000011.1.cds

Sequence Viewer

Length: 297 bp
atgggtgaagttataaaatcagatatcgaagctctcacagcagcgtttaccgctgccatcaacaccatgaacaatcggatggaccaacagaccaatcggatggaccagcagattggagaaattcgtgggttgttgggagagagaaacaaccacaacaacaacgatcagaatagaggcagggaaggaggccaacgagttagggctccacgtagagaggttgttgttcatacttcagaatctgagtctgaagaagagattgtgcaatatgaaccacaaggacaagctgaccaagattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

11.09

Weight (kDa)

4.78

Isoelectric Point (pI)

45.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000291)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00860
fragaria_vesca FvH4_1g23712 FvH4_1g29809 FvH4_1g29810 FvH4_2g02661 FvH4_2g13451 FvH4_2g17921 FvH4_2g17922 FvH4_2g19251 FvH4_2g19252 FvH4_2g28221 FvH4_2g35961 FvH4_3g10372 FvH4_3g12461 FvH4_3g12461 FvH4_3g27861 FvH4_3g34591 FvH4_3g40201 FvH4_3g44612 FvH4_4g08352 FvH4_4g12251 FvH4_4g12742 FvH4_4g13904 FvH4_4g14287 FvH4_4g15243 FvH4_4g24071 FvH4_4g33448 FvH4_5g21912 FvH4_5g39371 FvH4_6g14992 FvH4_6g15221 FvH4_6g20603 FvH4_6g31093 FvH4_6g32372 FvH4_6g33012
malus_domestica MD11G1009100.v1.1 MD13G1145000.v1.1 MD16G1138700.v1.1
prunus_persica Prupe.5G246300_v2.0.a1 Prupe.7G034800_v2.0.a1 Prupe.8G084500_v2.0.a1
pyrus_communis pycom01g18240 pycom04g00330 pycom05g09010 pycom06g01670 pycom06g01690 pycom06g07180 pycom06g11620 pycom10g05720 pycom1134g00040 pycom1134g00060 pycom12486g00010 pycom12555g00230 pycom13g21670 pycom13g23130 pycom13g23140 pycom14g10580
rosa_chinensis RchiOBHm_Chr1g0330691 RchiOBHm_Chr2g0106171 RchiOBHm_Chr2g0134731 RchiOBHm_Chr2g0142791 RchiOBHm_Chr2g0149861 RchiOBHm_Chr3g0452401 RchiOBHm_Chr3g0461881 RchiOBHm_Chr4g0401341 RchiOBHm_Chr5g0075641 RchiOBHm_Chr6g0265961 RchiOBHm_Chr7g0200201 RchiOBHm_Chr7g0237811
rosa_laevigata RLG00000002773
rosa_multiflora Rmu_co8037806.1_g000001 Rmu_co8445989.1_g000001 Rmu_sc0000745.1_g000039 Rmu_sc0004448.1_g000029 Rmu_sc0004488.1_g000002 Rmu_sc0004591.1_g000018 Rmu_sc0005065.1_g000030 Rmu_sc0005150.1_g000005 Rmu_sc0005654.1_g000011 Rmu_sc0006986.1_g000016
rosa_roxburghii Rroxscaffold_164G00436490 Rroxscaffold_175G00432490 Rroxscaffold_1G00059440 Rroxscaffold_1G00064410 Rroxscaffold_2G00100310 Rroxscaffold_2G00128170 Rroxscaffold_3G00239420 Rroxscaffold_3G00264970 Rroxscaffold_3G00271550 Rroxscaffold_4G00300240 Rroxscaffold_5G00385050 Rroxscaffold_6G00399720
rosa_rugosa Rorug02G0252200
rosa_samantha Rh2DG251900 Rh7CG329900
rosa_wichuraiana Rw0G004800 Rw1G000850 Rw1G022350 Rw2G027030 Rw2G027760 Rw2G028410 Rw2G029130 Rw2G029390 Rw2G032490 Rw2G039460 Rw2G047800 Rw2G050340 Rw3G026430 Rw4G018370 Rw4G030750 Rw4G033140 Rw5G011950 Rw5G012010 Rw5G029280 Rw5G040190 Rw5G044570 Rw5G048240 Rw6G000340 Rw6G010140 Rw6G026480 Rw7G033750 Rw7G037250 Rw7G042080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 14
AciI CCGC 1 cut(s) 51
AcsI RAATTY 1 cut(s) 120
AcuI CTGAAG 2 cut(s) 216, 267
AluBI AGCT 2 cut(s) 32, 284
AluI AGCT 2 cut(s) 32, 284
AlwNI CAGNNNCTG 1 cut(s) 239
AoxI GGCC 1 cut(s) 187
ApeKI GCWGC 2 cut(s) 41, 53
ApoI RAATTY 1 cut(s) 120
AspS9I GGNCC 2 cut(s) 82, 103
AsuHPI GGTGA 1 cut(s) 17
AvaII GGWCC 2 cut(s) 82, 103
BanII GRGCYC 1 cut(s) 205
BbvI GCAGC 2 cut(s) 40, 53
BccI CCATC 3 cut(s) 65, 73, 94
BisI GCNGC 2 cut(s) 42, 54
BlsI GCNGC 2 cut(s) 43, 55
Bme18I GGWCC 2 cut(s) 82, 103
BmgT120I GGNCC 2 cut(s) 82, 103
BmiI GGNNCC 1 cut(s) 204
BsaAI YACGTR 1 cut(s) 209
BseGI GGATG 2 cut(s) 84, 105
BseMII CTCAG 1 cut(s) 231
BseXI GCAGC 2 cut(s) 40, 53
BshFI GGCC 1 cut(s) 189
BsnI GGCC 1 cut(s) 189
Bsp1286I GDGCHC 1 cut(s) 205
Bsp143I GATC 1 cut(s) 163
BspACI CCGC 1 cut(s) 51
BspANI GGCC 1 cut(s) 189
BspCNI CTCAG 1 cut(s) 232
BspLI GGNNCC 1 cut(s) 204
BssMI GATC 1 cut(s) 163
Bst6I CTCTTC 1 cut(s) 246
BstBAI YACGTR 1 cut(s) 209
BstDEI CTNAG 1 cut(s) 240
BstF5I GGATG 2 cut(s) 84, 105
BstKTI GATC 1 cut(s) 166
BstMBI GATC 1 cut(s) 163
BstMWI GCNNNNNNNGC 2 cut(s) 38, 50
BstV1I GCAGC 2 cut(s) 40, 53
BstXI CCANNNNNNTGG 2 cut(s) 100, 113
BsuRI GGCC 1 cut(s) 189
BtsCI GGATG 2 cut(s) 84, 105
CaiI CAGNNNCTG 1 cut(s) 239
Cfr13I GGNCC 2 cut(s) 82, 103
CviAII CATG 1 cut(s) 67
CviJI RGCY 4 cut(s) 32, 189, 203, 284
CviKI_1 RGCY 4 cut(s) 32, 189, 203, 284
DdeI CTNAG 1 cut(s) 240
DpnI GATC 1 cut(s) 165
DpnII GATC 1 cut(s) 163
Eam1104I CTCTTC 1 cut(s) 246
EarI CTCTTC 1 cut(s) 246
Eco24I GRGCYC 1 cut(s) 205
Eco32I GATATC 1 cut(s) 25
Eco47I GGWCC 2 cut(s) 82, 103
Eco57I CTGAAG 2 cut(s) 216, 267
EcoRV GATATC 1 cut(s) 25
EcoT38I GRGCYC 1 cut(s) 205
FaeI CATG 1 cut(s) 70
FaiI YATR 4 cut(s) 14, 68, 228, 267
FatI CATG 1 cut(s) 66
Fnu4HI GCNGC 2 cut(s) 42, 54
FokI GGATG 2 cut(s) 91, 112
FriOI GRGCYC 1 cut(s) 205
Fsp4HI GCNGC 2 cut(s) 42, 54
GluI GCNGC 2 cut(s) 42, 54
HaeIII GGCC 1 cut(s) 189
Hin1II CATG 1 cut(s) 70
HinfI GANTC 2 cut(s) 236, 242
HphI GGTGA 1 cut(s) 17
Hpy166II GTNNAC 1 cut(s) 48
Hpy188I TCNGA 7 cut(s) 22, 78, 99, 168, 235, 241, 247
Hpy8I GTNNAC 1 cut(s) 48
HpyAV CCTTC 1 cut(s) 176
HpyCH4IV ACGT 1 cut(s) 208
HpyCH4V TGCA 1 cut(s) 262
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 50
HpyF3I CTNAG 1 cut(s) 240
HpySE526I ACGT 1 cut(s) 208
Hsp92II CATG 1 cut(s) 70
Kzo9I GATC 1 cut(s) 163
LmnI GCTCC 1 cut(s) 208
LpnPI CCDG 2 cut(s) 119, 163
Lsp1109I GCAGC 2 cut(s) 40, 53
MaeII ACGT 1 cut(s) 208
MalI GATC 1 cut(s) 165
MboI GATC 1 cut(s) 163
MboII GAAGA 2 cut(s) 260, 263
MhlI GDGCHC 1 cut(s) 205
MluCI AATT 1 cut(s) 120
MlyI GAGTC 1 cut(s) 251
MnlI CCTC 3 cut(s) 167, 179, 208
MseI TTAA 1 cut(s) 295
MspA1I CMGCKG 1 cut(s) 53
MwoI GCNNNNNNNGC 2 cut(s) 38, 50
NdeII GATC 1 cut(s) 163
NlaIII CATG 1 cut(s) 70
NlaIV GGNNCC 1 cut(s) 204
PfeI GAWTC 1 cut(s) 236
PkrI GCNGC 2 cut(s) 43, 55
PleI GAGTC 1 cut(s) 250
PpsI GAGTC 1 cut(s) 250
Ppu21I YACGTR 1 cut(s) 209
PsiI TTATAA 1 cut(s) 14
PspN4I GGNNCC 1 cut(s) 204
PspPI GGNCC 2 cut(s) 82, 103
PstNI CAGNNNCTG 1 cut(s) 239
SaqAI TTAA 1 cut(s) 295
SatI GCNGC 2 cut(s) 42, 54
Sau3AI GATC 1 cut(s) 163
Sau96I GGNCC 2 cut(s) 82, 103
SchI GAGTC 1 cut(s) 251
SduI GDGCHC 1 cut(s) 205
SetI ASST 4 cut(s) 34, 211, 219, 286
SgeI CNNG 8 cut(s) 79, 118, 137, 190, 206, 219, 287, 293
SinI GGWCC 2 cut(s) 82, 103
Sse9I AATT 1 cut(s) 120
SsiI CCGC 1 cut(s) 51
TaiI ACGT 1 cut(s) 211
TaqI TCGA 1 cut(s) 27
TasI AATT 1 cut(s) 120
TfiI GAWTC 1 cut(s) 236
Tru1I TTAA 1 cut(s) 295
Tru9I TTAA 1 cut(s) 295
TseI GCWGC 2 cut(s) 41, 53
TspDTI ATGAA 3 cut(s) 83, 215, 282
VpaK11BI GGWCC 2 cut(s) 82, 103
XapI RAATTY 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.