FvH4_4g24071
ERF Family

DNA RNA polymerases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000291
Physical Location & Seq
Reverse (-)
26371220 .. 26372297
1078 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g24071.t1

Sequence Viewer

Length: 762 bp
ATGAAACTGTTGATGACAGAACGATTCCTGCCAGAGGACTATGAACAGATTCTTTACAGGATGTACCTAGATTGTGTTCAAGGGGCGAAGACCGTAACAGAGTATACCGCTGAGTTTGTGCGTCTTTCTGAGCGCAATGACTTAGGCGAATCTGAAGGGCAGAAGGTTGCTCGGTACATTAGTGGGTTGAGACCTTCCATACAAGAGAAGATTGGCTTACAAACTATGTGGTCTGTGACTGAGGCTGCAAGTTTGGCGATAAAGGCGGAGCTGATGGAGAGATCCCCTAGAGTTTCTTTTCAGTTTCCAAGATTCACTAGTCAGAGGAGTACTGAAGCCGCGAGTTATGTGGGAGATAAAGGGAAAACAGTGACGCAGAATACGGGTGGAATGACCACTAGGGCTTCTAGTGCTGTTAACAAAGAGGGTGGCGTTTCTGGTTTTGGCAGTACTAGCAGGGCAACTCGGGCAGCACCTGTGCAGCGACCTTTTAACCCTTATACAAGGCCTTTCCTAGGTACTTGTTATAGGTGTTTACAGCCTGGTCATAGATCCAACGAGTGTACTGCCCCTCCGAAGGTGGTTAAAGCAGTTCAGGCTTTAATCGAGGCCTGCGAGGAAGACGAGGCGGAGGAAGGAGGCGATGACTATGAAGGGGCTGAATTTGCAGTGGAAGATTCTCCAGAAAAGGTGAACATTGTATTGCAGAGAATTCTGTTGTCTCCCAGGAAGGAGGACGGTCAACGGGTCGGGATAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 Retrotrans_gag rve zf-H2C2

Protein Analysis

254

Amino Acids

28.07

Weight (kDa)

5.53

Isoelectric Point (pI)

53.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotrans_gag PF03732 2 - 65 1.1e-06 Retrotransposon gag protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000291)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00860
fragaria_vesca FvH4_1g23712 FvH4_1g29809 FvH4_1g29810 FvH4_2g02661 FvH4_2g13451 FvH4_2g17921 FvH4_2g17922 FvH4_2g19251 FvH4_2g19252 FvH4_2g28221 FvH4_2g35961 FvH4_3g10372 FvH4_3g12461 FvH4_3g12461 FvH4_3g27861 FvH4_3g34591 FvH4_3g40201 FvH4_3g44612 FvH4_4g08352 FvH4_4g12251 FvH4_4g12742 FvH4_4g13904 FvH4_4g14287 FvH4_4g15243 FvH4_4g24071 FvH4_4g33448 FvH4_5g21912 FvH4_5g39371 FvH4_6g14992 FvH4_6g15221 FvH4_6g20603 FvH4_6g31093 FvH4_6g32372 FvH4_6g33012
malus_domestica MD11G1009100.v1.1 MD13G1145000.v1.1 MD16G1138700.v1.1
prunus_persica Prupe.5G246300_v2.0.a1 Prupe.7G034800_v2.0.a1 Prupe.8G084500_v2.0.a1
pyrus_communis pycom01g18240 pycom04g00330 pycom05g09010 pycom06g01670 pycom06g01690 pycom06g07180 pycom06g11620 pycom10g05720 pycom1134g00040 pycom1134g00060 pycom12486g00010 pycom12555g00230 pycom13g21670 pycom13g23130 pycom13g23140 pycom14g10580
rosa_chinensis RchiOBHm_Chr1g0330691 RchiOBHm_Chr2g0106171 RchiOBHm_Chr2g0134731 RchiOBHm_Chr2g0142791 RchiOBHm_Chr2g0149861 RchiOBHm_Chr3g0452401 RchiOBHm_Chr3g0461881 RchiOBHm_Chr4g0401341 RchiOBHm_Chr5g0075641 RchiOBHm_Chr6g0265961 RchiOBHm_Chr7g0200201 RchiOBHm_Chr7g0237811
rosa_laevigata RLG00000002773
rosa_multiflora Rmu_co8037806.1_g000001 Rmu_co8445989.1_g000001 Rmu_sc0000745.1_g000039 Rmu_sc0004448.1_g000029 Rmu_sc0004488.1_g000002 Rmu_sc0004591.1_g000018 Rmu_sc0005065.1_g000030 Rmu_sc0005150.1_g000005 Rmu_sc0005654.1_g000011 Rmu_sc0006986.1_g000016
rosa_roxburghii Rroxscaffold_164G00436490 Rroxscaffold_175G00432490 Rroxscaffold_1G00059440 Rroxscaffold_1G00064410 Rroxscaffold_2G00100310 Rroxscaffold_2G00128170 Rroxscaffold_3G00239420 Rroxscaffold_3G00264970 Rroxscaffold_3G00271550 Rroxscaffold_4G00300240 Rroxscaffold_5G00385050 Rroxscaffold_6G00399720
rosa_rugosa Rorug02G0252200
rosa_samantha Rh2DG251900 Rh7CG329900
rosa_wichuraiana Rw0G004800 Rw1G000850 Rw1G022350 Rw2G027030 Rw2G027760 Rw2G028410 Rw2G029130 Rw2G029390 Rw2G032490 Rw2G039460 Rw2G047800 Rw2G050340 Rw3G026430 Rw4G018370 Rw4G030750 Rw4G033140 Rw5G011950 Rw5G012010 Rw5G029280 Rw5G040190 Rw5G044570 Rw5G048240 Rw6G000340 Rw6G010140 Rw6G026480 Rw7G033750 Rw7G037250 Rw7G042080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 104
AccII CGCG 1 cut(s) 341
AciI CCGC 4 cut(s) 108, 266, 339, 629
AclWI GGATC 2 cut(s) 276, 546
AcsI RAATTY 2 cut(s) 662, 711
AcuI CTGAAG 2 cut(s) 174, 354
AfaI GTAC 6 cut(s) 65, 176, 331, 451, 520, 565
AfiI CCNNNNNNNGG 3 cut(s) 34, 515, 577
AgsI TTSAA 1 cut(s) 80
AhlI ACTAGT 1 cut(s) 317
AjnI CCWGG 2 cut(s) 541, 725
AluBI AGCT 1 cut(s) 271
AluI AGCT 1 cut(s) 271
Alw26I GTCTC 2 cut(s) 184, 726
AlwI GGATC 2 cut(s) 276, 546
AlwNI CAGNNNCTG 1 cut(s) 476
Ama87I CYCGRG 1 cut(s) 465
AoxI GGCC 2 cut(s) 506, 609
ApeKI GCWGC 3 cut(s) 245, 470, 481
ApoI RAATTY 2 cut(s) 662, 711
Asp700I GAANNNNTTC 1 cut(s) 48
AspA2I CCTAGG 1 cut(s) 514
AspLEI GCGC 1 cut(s) 135
AsuHPI GGTGA 1 cut(s) 703
AvaI CYCGRG 1 cut(s) 465
AvrII CCTAGG 1 cut(s) 514
BaeI ACNNNNGTAYC 2 cut(s) 166, 199
BbsI GAAGAC 2 cut(s) 95, 627
BbvI GCAGC 3 cut(s) 232, 482, 493
BccI CCATC 1 cut(s) 268
BcgI CGANNNNNNTGC 2 cut(s) 548, 582
BciT130I CCWGG 2 cut(s) 543, 727
BcoDI GTCTC 2 cut(s) 184, 726
BcuI ACTAGT 1 cut(s) 317
BfaI CTAG 7 cut(s) 68, 288, 318, 399, 408, 453, 515
BisI GCNGC 4 cut(s) 246, 339, 471, 482
BlnI CCTAGG 1 cut(s) 514
BlsI GCNGC 4 cut(s) 247, 340, 472, 483
BmcAI AGTACT 2 cut(s) 331, 451
Bme1390I CCNGG 2 cut(s) 543, 727
BmeT110I CYCGRG 1 cut(s) 465
BmrFI CCNGG 2 cut(s) 543, 727
BpiI GAAGAC 2 cut(s) 95, 627
BpmI CTGGAG 1 cut(s) 666
BsaI GGTCTC 1 cut(s) 184
BsaJI CCNNGG 2 cut(s) 514, 725
BsaXI ACNNNNNCTCC 2 cut(s) 556, 586
Bsc4I CCNNNNNNNGG 3 cut(s) 34, 515, 577
Bse3DI GCAATG 1 cut(s) 142
BseBI CCWGG 2 cut(s) 543, 727
BseDI CCNNGG 2 cut(s) 514, 725
BseGI GGATG 1 cut(s) 66
BseLI CCNNNNNNNGG 3 cut(s) 34, 515, 577
BseMI GCAATG 1 cut(s) 142
BseMII CTCAG 3 cut(s) 102, 120, 231
BseRI GAGGAG 1 cut(s) 340
BseXI GCAGC 3 cut(s) 232, 482, 493
BsgI GTGCAG 1 cut(s) 500
Bsh1236I CGCG 1 cut(s) 341
BshFI GGCC 2 cut(s) 508, 611
BsiHKCI CYCGRG 1 cut(s) 465
BslI CCNNNNNNNGG 3 cut(s) 34, 515, 577
BsmAI GTCTC 2 cut(s) 184, 726
BsnI GGCC 2 cut(s) 508, 611
Bso31I GGTCTC 1 cut(s) 184
BsoBI CYCGRG 1 cut(s) 465
Bsp143I GATC 2 cut(s) 281, 551
BspACI CCGC 4 cut(s) 108, 266, 339, 629
BspANI GGCC 2 cut(s) 508, 611
BspCNI CTCAG 3 cut(s) 103, 121, 232
BspFNI CGCG 1 cut(s) 341
BspPI GGATC 2 cut(s) 276, 546
BspTNI GGTCTC 1 cut(s) 184
BsrDI GCAATG 1 cut(s) 142
BssECI CCNNGG 2 cut(s) 514, 725
BssMI GATC 2 cut(s) 281, 551
BssNAI GTATAC 1 cut(s) 105
BssT1I CCWWGG 1 cut(s) 514
Bst1107I GTATAC 1 cut(s) 105
Bst2UI CCWGG 2 cut(s) 543, 727
Bst4CI ACNGT 4 cut(s) 9, 94, 370, 740
BstC8I GCNNGC 1 cut(s) 613
BstDEI CTNAG 4 cut(s) 111, 129, 142, 240
BstENI CCTNNNNNAGG 2 cut(s) 32, 513
BstF5I GGATG 1 cut(s) 66
BstFNI CGCG 1 cut(s) 341
BstHHI GCGC 1 cut(s) 135
BstKTI GATC 2 cut(s) 284, 554
BstMAI GTCTC 2 cut(s) 184, 726
BstMBI GATC 2 cut(s) 281, 551
BstMWI GCNNNNNNNGC 7 cut(s) 254, 263, 410, 453, 467, 596, 665
BstNI CCWGG 2 cut(s) 543, 727
BstSCI CCNGG 2 cut(s) 541, 725
BstUI CGCG 1 cut(s) 341
BstV1I GCAGC 3 cut(s) 232, 482, 493
BstV2I GAAGAC 2 cut(s) 95, 627
BstX2I RGATCY 2 cut(s) 281, 551
BstYI RGATCY 2 cut(s) 281, 551
BstZ17I GTATAC 1 cut(s) 105
BsuRI GGCC 2 cut(s) 508, 611
BtgZI GCGATG 1 cut(s) 657
BtsCI GGATG 1 cut(s) 66
BtsI GCAGTG 1 cut(s) 675
BtsIMutI CAGTG 2 cut(s) 375, 675
Cac8I GCNNGC 1 cut(s) 613
CaiI CAGNNNCTG 1 cut(s) 476
CfoI GCGC 1 cut(s) 135
CseI GACGC 2 cut(s) 110, 382
Csp6I GTAC 6 cut(s) 64, 175, 330, 450, 519, 564
CspCI CAANNNNNGTGG 4 cut(s) 209, 244, 409, 444
CviQI GTAC 6 cut(s) 64, 175, 330, 450, 519, 564
DdeI CTNAG 4 cut(s) 111, 129, 142, 240
DpnI GATC 2 cut(s) 283, 553
DpnII GATC 2 cut(s) 281, 551
EciI GGCGGA 2 cut(s) 281, 644
Eco130I CCWWGG 1 cut(s) 514
Eco147I AGGCCT 2 cut(s) 508, 611
Eco31I GGTCTC 1 cut(s) 184
Eco57I CTGAAG 2 cut(s) 174, 354
Eco88I CYCGRG 1 cut(s) 465
EcoNI CCTNNNNNAGG 2 cut(s) 32, 513
EcoRI GAATTC 1 cut(s) 711
EcoRII CCWGG 2 cut(s) 541, 725
EcoT14I CCWWGG 1 cut(s) 514
ErhI CCWWGG 1 cut(s) 514
FaiI YATR 9 cut(s) 42, 105, 200, 227, 348, 501, 528, 549, 651
FalI AAGNNNNNCTT 2 cut(s) 200, 232
FblI GTMKAC 1 cut(s) 104
Fnu4HI GCNGC 4 cut(s) 246, 339, 471, 482
FokI GGATG 1 cut(s) 73
Fsp4HI GCNGC 4 cut(s) 246, 339, 471, 482
FspBI CTAG 7 cut(s) 68, 288, 318, 399, 408, 453, 515
GlaI GCGC 1 cut(s) 134
GluI GCNGC 4 cut(s) 246, 339, 471, 482
GsuI CTGGAG 1 cut(s) 666
HaeIII GGCC 2 cut(s) 508, 611
HgaI GACGC 2 cut(s) 110, 382
HhaI GCGC 1 cut(s) 135
Hin6I GCGC 1 cut(s) 133
HinP1I GCGC 1 cut(s) 133
HincII GTYRAC 2 cut(s) 418, 743
HindII GTYRAC 2 cut(s) 418, 743
HinfI GANTC 5 cut(s) 24, 49, 149, 312, 677
HpaI GTTAAC 1 cut(s) 418
HphI GGTGA 1 cut(s) 703
Hpy166II GTNNAC 6 cut(s) 105, 418, 536, 564, 694, 743
Hpy188I TCNGA 4 cut(s) 130, 154, 324, 576
Hpy188III TCNNGA 2 cut(s) 683, 751
Hpy8I GTNNAC 6 cut(s) 105, 418, 536, 564, 694, 743
HpyAV CCTTC 7 cut(s) 149, 157, 204, 571, 629, 647, 724
HpyCH4III ACNGT 4 cut(s) 9, 94, 370, 740
HpyCH4V TGCA 4 cut(s) 248, 481, 668, 706
HpyF10VI GCNNNNNNNGC 7 cut(s) 254, 263, 410, 453, 467, 596, 665
HpyF3I CTNAG 4 cut(s) 111, 129, 142, 240
HspAI GCGC 1 cut(s) 133
KspAI GTTAAC 1 cut(s) 418
Kzo9I GATC 2 cut(s) 281, 551
LmnI GCTCC 1 cut(s) 268
Lsp1109I GCAGC 3 cut(s) 232, 482, 493
MaeI CTAG 7 cut(s) 68, 288, 318, 399, 408, 453, 515
MaeIII GTNAC 3 cut(s) 94, 235, 370
MalI GATC 2 cut(s) 283, 553
MboI GATC 2 cut(s) 281, 551
MboII GAAGA 4 cut(s) 100, 220, 632, 686
MflI RGATCY 2 cut(s) 281, 551
MluCI AATT 2 cut(s) 662, 711
MmeI TCCRAC 1 cut(s) 579
MroXI GAANNNNTTC 1 cut(s) 48
MseI TTAA 4 cut(s) 417, 492, 585, 602
MspA1I CMGCKG 1 cut(s) 110
MspR9I CCNGG 2 cut(s) 543, 727
MvaI CCWGG 2 cut(s) 543, 727
MvnI CGCG 1 cut(s) 341
MwoI GCNNNNNNNGC 7 cut(s) 254, 263, 410, 453, 467, 596, 665
NdeII GATC 2 cut(s) 281, 551
NmuCI GTSAC 2 cut(s) 235, 370
PceI AGGCCT 2 cut(s) 508, 611
PcsI WCGNNNNNNNCGW 1 cut(s) 612
PdmI GAANNNNTTC 1 cut(s) 48
PfeI GAWTC 5 cut(s) 24, 49, 149, 312, 677
PkrI GCNGC 4 cut(s) 247, 340, 472, 483
Psp6I CCWGG 2 cut(s) 541, 725
PspGI CCWGG 2 cut(s) 541, 725
PstNI CAGNNNCTG 1 cut(s) 476
PsuI RGATCY 2 cut(s) 281, 551
RsaI GTAC 6 cut(s) 65, 176, 331, 451, 520, 565
RsaNI GTAC 6 cut(s) 64, 175, 330, 450, 519, 564
SaqAI TTAA 4 cut(s) 417, 492, 585, 602
SatI GCNGC 4 cut(s) 246, 339, 471, 482
Sau3AI GATC 2 cut(s) 281, 551
ScaI AGTACT 2 cut(s) 331, 451
ScrFI CCNGG 2 cut(s) 543, 727
SpeI ACTAGT 1 cut(s) 317
Sse9I AATT 2 cut(s) 662, 711
SseBI AGGCCT 2 cut(s) 508, 611
SsiI CCGC 4 cut(s) 108, 266, 339, 629
SspMI CTAG 7 cut(s) 68, 288, 318, 399, 408, 453, 515
StuI AGGCCT 2 cut(s) 508, 611
StyD4I CCNGG 2 cut(s) 541, 725
StyI CCWWGG 1 cut(s) 514
TaaI ACNGT 4 cut(s) 9, 94, 370, 740
TaqI TCGA 1 cut(s) 606
TasI AATT 2 cut(s) 662, 711
TatI WGTACW 3 cut(s) 329, 449, 563
TauI GCSGC 1 cut(s) 341
TfiI GAWTC 5 cut(s) 24, 49, 149, 312, 677
Tru1I TTAA 4 cut(s) 417, 492, 585, 602
Tru9I TTAA 4 cut(s) 417, 492, 585, 602
TscAI CASTG 2 cut(s) 375, 675
TseFI GTSAC 2 cut(s) 235, 370
TseI GCWGC 3 cut(s) 245, 470, 481
Tsp45I GTSAC 2 cut(s) 235, 370
TspDTI ATGAA 3 cut(s) 17, 57, 666
TspRI CASTG 2 cut(s) 375, 675
XagI CCTNNNNNAGG 2 cut(s) 32, 513
XapI RAATTY 2 cut(s) 662, 711
XmaJI CCTAGG 1 cut(s) 514
XmiI GTMKAC 1 cut(s) 104
XmnI GAANNNNTTC 1 cut(s) 48
XspI CTAG 7 cut(s) 68, 288, 318, 399, 408, 453, 515
ZrmI AGTACT 2 cut(s) 331, 451
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.