Rw2G029130

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000291
Physical Location & Seq
Forward (+)
46913768 .. 46915940
2173 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G029130.1

Sequence Viewer

Length: 1971 bp
ATGGGTGAAGTTATGAAAGCAGATCTTCATGCTCTTACCGCTTCTCTTATTGCAGTGTTTATTACTTCCATCAACACCATGAACAATCAGATTGGAGAAATTCGTGGATTGGTGGGAGAACAAAACAATGGAAACAACAACAACAATCGGAATAGAGGCGGGGAAGGAGGCCAGCGAGCTAGGGCTCTGTGTGAAGAAATTGTGCAACCTGAACAACAAGGGCAAGCTGACCAGGATTACAAAGTCAAGGCCGAAATTCCTTTCTTTTCGGGCAACTTGGGTGTGGAAGATTATTTGGATTGGCAACTTCAGGTGGACAGATTCTTTGAGATTATGGAGGTGCCTGGACAAAAACAGGTTAAGCATGTTGCCTGGAGATTGAAGAGCACTGCTGTAGTTTGGTGGGATAAGTTGCAGAGTACTCGAAAGAAGCAGAGGAAGCAGGGCGTTAAAACATGGCGAAGAATGAAACAGCTAATGATGGAGAGATTCTTGCTAGATGATTATGAGCAAATTCTGTACAGGTTGTATATTGAATGTGTCCAGGGAACTAGGACAGTAGCTGAGTACACCGCTGAGTTCTTACGTTTTTCAGAGCGTAATGAACTAGGAGAAACTGAGGACCAGAAGGTGGCTCGCTATATCAATGGGCTGAAGCCTTCCATTCAGGAGAAAATTGGGTTACAAACTATGTGGACTGTGGCAGAAGCTTCAAATCTAGCATTGAAGGCAGAATTGTTAGAGAAGCCTTCACGAGCTTCTTCTTTCCAGAGATATAACTACCAAAGGAGCACAAATTTGGTAAACGCCTCAACTGACAAGGGTAAAGCCTTACAACAGAATACAGGAAGTGCTTTTAGGGCTTTCAACCCCCCTTCTAAAGGGACTGGTAGTTCTAGCAGTTCTAGTGGTGCTCCAAATTGGTCTGGGCATAGATCTAATGTGTGTCCTCAGAGGAGACAAGCTGCTCTTATAGGTGAGTATGATGAAGATGAAGAGGAAGTTGGAAGAGATTACAATTATGATGGGGCTGAGTTTGCGGTGGAGGAGTCTCCTGAAAAGGTTAATATTGTGTTGCAGCGGATTTTATTGTCTCCTAAAGAAGATGGGCAACAATGCAATATTTTCAGGTCACTTTGTTCCATTAATAACAAAGTGTGCAATTTGATTGTGGATAATGGGAGCTGTGAAAATTTTGTAGCCAAGAAGCTGGTGGAGTATTTGCAGCTACCTACACAGCCTCATGATTCACCTTATTCCCTTGGGTGGGTCAAGAAAGGTCCACAGCAATATAAAGATGACATTCTGTGTGATATTATCGATATGGATGCTTGTCATATTTTATTTGGGCGACCTTGGCAATATGATGTGGATGTGACTTACAAAGGCAGAGATAATGTGATGATGTTTATGTGGCATAGTCATAAAATTGCTATGGCTCCTGTCTGTCAATTTGAGAAGTCAGGTGGAAAGAAAGGGGAGAGTTTTCTGATCTTGTCTAGCAGTGAATTCGATATGGAGGAAGTTGTTAAAGAATCTGAAGAAGAGGTGGTGATCCCTAAAGAAGTGCAGAATATGTTGGGAGAGTTTGAAGAGTTGATTTCGGATGAGTTGCCCAATGAGTTACCACCTATGAGGGACATTCAACATCAAATTGATTTGGTTCCCAGAGCTAGTTTGCCAAATCTGCCCCATTACCACATGAGTCCTAAAGAGAATGAGATTTTGAGGGAGCAGATCGAAGACTTGCTAAAGAAAGGATTTATTCGTGAAAGTATGAGTCCTTGTGCAGTTCCAGTCTTCCTTGTTCCTCAGAAGGGTAATCAATGGTGGATGTGTGTTGATAGCCGGGCTATAAATAAGATCACTGTGAAGTACAGGTTTCCTATTCCTCGTTTGGAGGACATGCTTGATGAGCTAGATGGTTCCAAGGTGTTTACCAAGATAGATCTTCGAAGTGGTTACCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 Retrotrans_gag rve zf-CCHC zf-H2C2

Protein Analysis

656

Amino Acids

75.1

Weight (kDa)

5.51

Isoelectric Point (pI)

49.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ty3_capsid PF19259 114 - 249 3e-06 Ty3 transposon capsid-like protein
Retrotrans_gag PF03732 122 - 220 1e-12 Retrotransposon gag protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000291)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00860
fragaria_vesca FvH4_1g23712 FvH4_1g29809 FvH4_1g29810 FvH4_2g02661 FvH4_2g13451 FvH4_2g17921 FvH4_2g17922 FvH4_2g19251 FvH4_2g19252 FvH4_2g28221 FvH4_2g35961 FvH4_3g10372 FvH4_3g12461 FvH4_3g12461 FvH4_3g27861 FvH4_3g34591 FvH4_3g40201 FvH4_3g44612 FvH4_4g08352 FvH4_4g12251 FvH4_4g12742 FvH4_4g13904 FvH4_4g14287 FvH4_4g15243 FvH4_4g24071 FvH4_4g33448 FvH4_5g21912 FvH4_5g39371 FvH4_6g14992 FvH4_6g15221 FvH4_6g20603 FvH4_6g31093 FvH4_6g32372 FvH4_6g33012
malus_domestica MD11G1009100.v1.1 MD13G1145000.v1.1 MD16G1138700.v1.1
prunus_persica Prupe.5G246300_v2.0.a1 Prupe.7G034800_v2.0.a1 Prupe.8G084500_v2.0.a1
pyrus_communis pycom01g18240 pycom04g00330 pycom05g09010 pycom06g01670 pycom06g01690 pycom06g07180 pycom06g11620 pycom10g05720 pycom1134g00040 pycom1134g00060 pycom12486g00010 pycom12555g00230 pycom13g21670 pycom13g23130 pycom13g23140 pycom14g10580
rosa_chinensis RchiOBHm_Chr1g0330691 RchiOBHm_Chr2g0106171 RchiOBHm_Chr2g0134731 RchiOBHm_Chr2g0142791 RchiOBHm_Chr2g0149861 RchiOBHm_Chr3g0452401 RchiOBHm_Chr3g0461881 RchiOBHm_Chr4g0401341 RchiOBHm_Chr5g0075641 RchiOBHm_Chr6g0265961 RchiOBHm_Chr7g0200201 RchiOBHm_Chr7g0237811
rosa_laevigata RLG00000002773
rosa_multiflora Rmu_co8037806.1_g000001 Rmu_co8445989.1_g000001 Rmu_sc0000745.1_g000039 Rmu_sc0004448.1_g000029 Rmu_sc0004488.1_g000002 Rmu_sc0004591.1_g000018 Rmu_sc0005065.1_g000030 Rmu_sc0005150.1_g000005 Rmu_sc0005654.1_g000011 Rmu_sc0006986.1_g000016
rosa_roxburghii Rroxscaffold_164G00436490 Rroxscaffold_175G00432490 Rroxscaffold_1G00059440 Rroxscaffold_1G00064410 Rroxscaffold_2G00100310 Rroxscaffold_2G00128170 Rroxscaffold_3G00239420 Rroxscaffold_3G00264970 Rroxscaffold_3G00271550 Rroxscaffold_4G00300240 Rroxscaffold_5G00385050 Rroxscaffold_6G00399720
rosa_rugosa Rorug02G0252200
rosa_samantha Rh2DG251900 Rh7CG329900
rosa_wichuraiana Rw0G004800 Rw1G000850 Rw1G022350 Rw2G027030 Rw2G027760 Rw2G028410 Rw2G029130 Rw2G029390 Rw2G032490 Rw2G039460 Rw2G047800 Rw2G050340 Rw3G026430 Rw4G018370 Rw4G030750 Rw4G033140 Rw5G011950 Rw5G012010 Rw5G029280 Rw5G040190 Rw5G044570 Rw5G048240 Rw6G000340 Rw6G010140 Rw6G026480 Rw7G033750 Rw7G037250 Rw7G042080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 340
AccB7I CCANNNNNTGG 1 cut(s) 631
AciI CCGC 5 cut(s) 39, 159, 573, 1040, 1081
AclWI GGATC 1 cut(s) 1549
AcsI RAATTY 6 cut(s) 99, 255, 513, 796, 1192, 1508
AcuI CTGAAG 3 cut(s) 293, 674, 1560
AfaI GTAC 4 cut(s) 421, 521, 569, 1877
AfiI CCNNNNNNNGG 5 cut(s) 631, 881, 1266, 1267, 1817
AgsI TTSAA 7 cut(s) 382, 536, 714, 727, 868, 1592, 1646
AjnI CCWGG 4 cut(s) 231, 343, 371, 543
AjuI GAANNNNNNNTTGG 2 cut(s) 987, 1019
AloI GAACNNNNNNTCC 2 cut(s) 877, 909
Alw21I GWGCWC 3 cut(s) 389, 794, 916
Alw26I GTCTC 3 cut(s) 952, 1056, 1098
AlwI GGATC 1 cut(s) 1549
AlwNI CAGNNNCTG 1 cut(s) 563
AoxI GGCC 2 cut(s) 169, 249
ApeKI GCWGC 3 cut(s) 965, 1078, 1225
ApoI RAATTY 6 cut(s) 99, 255, 513, 796, 1192, 1508
ArsI GACNNNNNNTTYG 2 cut(s) 308, 340
AseI ATTAAT 1 cut(s) 1146
AspS9I GGNCC 2 cut(s) 622, 1280
AsuC2I CCSGG 1 cut(s) 1850
AsuHPI GGTGA 4 cut(s) 17, 989, 1242, 1564
AsuII TTCGAA 1 cut(s) 1954
AvaII GGWCC 2 cut(s) 622, 1280
BanI GGYRCC 1 cut(s) 340
BanII GRGCYC 1 cut(s) 187
BauI CACGAG 1 cut(s) 753
BbsI GAAGAC 2 cut(s) 1749, 1792
Bbv12I GWGCWC 3 cut(s) 389, 794, 916
BbvI GCAGC 3 cut(s) 952, 1090, 1237
BccI CCATC 5 cut(s) 77, 475, 1019, 1100, 1916
BcgI CGANNNNNNTGC 6 cut(s) 404, 438, 1310, 1344, 1492, 1526
BciT130I CCWGG 4 cut(s) 233, 345, 373, 545
BcnI CCSGG 1 cut(s) 1850
BcoDI GTCTC 3 cut(s) 952, 1056, 1098
BfmI CTRYAG 1 cut(s) 393
BglII AGATCT 3 cut(s) 22, 935, 1948
BisI GCNGC 3 cut(s) 966, 1079, 1226
BlsI GCNGC 3 cut(s) 967, 1080, 1227
BmcAI AGTACT 1 cut(s) 421
Bme1390I CCNGG 5 cut(s) 233, 345, 373, 545, 1850
Bme18I GGWCC 2 cut(s) 622, 1280
BmgT120I GGNCC 2 cut(s) 622, 1280
BmiI GGNNCC 4 cut(s) 342, 1440, 1665, 1927
BmrFI CCNGG 5 cut(s) 233, 345, 373, 545, 1850
BmsI GCATC 1 cut(s) 1318
BpiI GAAGAC 2 cut(s) 1749, 1792
BpmI CTGGAG 1 cut(s) 394
Bpu14I TTCGAA 1 cut(s) 1954
BpuMI CCSGG 1 cut(s) 1850
Bsa29I ATCGAT 1 cut(s) 1320
BsaJI CCNNGG 4 cut(s) 544, 1261, 1355, 1929
Bsc4I CCNNNNNNNGG 5 cut(s) 631, 881, 1266, 1267, 1817
Bse1I ACTGG 2 cut(s) 892, 1796
BseBI CCWGG 4 cut(s) 233, 345, 373, 545
BseCI ATCGAT 1 cut(s) 1320
BseDI CCNNGG 4 cut(s) 544, 1261, 1355, 1929
BseGI GGATG 4 cut(s) 1333, 1378, 1612, 1839
BseLI CCNNNNNNNGG 5 cut(s) 631, 881, 1266, 1267, 1817
BseMII CTCAG 6 cut(s) 555, 567, 609, 965, 1023, 1826
BseNI ACTGG 2 cut(s) 892, 1796
BseRI GAGGAG 2 cut(s) 970, 1061
BseXI GCAGC 3 cut(s) 952, 1090, 1237
BsgI GTGCAG 2 cut(s) 1589, 1809
BshFI GGCC 2 cut(s) 171, 251
BshNI GGYRCC 1 cut(s) 340
BshVI ATCGAT 1 cut(s) 1320
BsiHKAI GWGCWC 3 cut(s) 389, 794, 916
BsiSI CCGG 1 cut(s) 1849
BslFI GGGAC 2 cut(s) 898, 1652
BslI CCNNNNNNNGG 5 cut(s) 631, 881, 1266, 1267, 1817
BsmAI GTCTC 3 cut(s) 952, 1056, 1098
BsmFI GGGAC 2 cut(s) 898, 1652
BsnI GGCC 2 cut(s) 171, 251
Bsp119I TTCGAA 1 cut(s) 1954
Bsp1286I GDGCHC 4 cut(s) 187, 389, 794, 916
Bsp1407I TGTACA 1 cut(s) 519
Bsp143I GATC 7 cut(s) 22, 935, 1491, 1554, 1737, 1863, 1948
BspACI CCGC 5 cut(s) 39, 159, 573, 1040, 1081
BspANI GGCC 2 cut(s) 171, 251
BspCNI CTCAG 6 cut(s) 556, 568, 610, 964, 1024, 1825
BspDI ATCGAT 1 cut(s) 1320
BspHI TCATGA 1 cut(s) 1243
BspLI GGNNCC 4 cut(s) 342, 1440, 1665, 1927
BspPI GGATC 1 cut(s) 1549
BspQI GCTCTTC 1 cut(s) 377
BspT104I TTCGAA 1 cut(s) 1954
BspT107I GGYRCC 1 cut(s) 340
BsrGI TGTACA 1 cut(s) 519
BsrI ACTGG 2 cut(s) 892, 1796
BssECI CCNNGG 4 cut(s) 544, 1261, 1355, 1929
BssMI GATC 7 cut(s) 22, 935, 1491, 1554, 1737, 1863, 1948
BssSI CACGAG 1 cut(s) 753
BssT1I CCWWGG 3 cut(s) 1261, 1355, 1929
Bst2BI CACGAG 1 cut(s) 753
Bst2UI CCWGG 4 cut(s) 233, 345, 373, 545
Bst4CI ACNGT 3 cut(s) 559, 700, 1870
Bst6I CTCTTC 5 cut(s) 377, 990, 1003, 1539, 1587
BstAUI TGTACA 1 cut(s) 519
BstBI TTCGAA 1 cut(s) 1954
BstC8I GCNNGC 4 cut(s) 173, 177, 225, 637
BstDEI CTNAG 6 cut(s) 564, 576, 618, 951, 1032, 1812
BstEII GGTNACC 1 cut(s) 1961
BstENI CCTNNNNNAGG 1 cut(s) 879
BstF5I GGATG 4 cut(s) 1333, 1378, 1612, 1839
BstKTI GATC 7 cut(s) 25, 938, 1494, 1557, 1740, 1866, 1951
BstMAI GTCTC 3 cut(s) 952, 1056, 1098
BstMBI GATC 7 cut(s) 22, 935, 1491, 1554, 1737, 1863, 1948
BstMWI GCNNNNNNNGC 8 cut(s) 38, 439, 728, 860, 1037, 1357, 1687, 1915
BstNI CCWGG 4 cut(s) 233, 345, 373, 545
BstNSI RCATGY 2 cut(s) 368, 1909
BstPI GGTNACC 1 cut(s) 1961
BstSCI CCNGG 5 cut(s) 231, 343, 371, 543, 1848
BstSFI CTRYAG 1 cut(s) 393
BstV1I GCAGC 3 cut(s) 952, 1090, 1237
BstV2I GAAGAC 2 cut(s) 1749, 1792
BstX2I RGATCY 3 cut(s) 22, 935, 1948
BstXI CCANNNNNNTGG 1 cut(s) 1210
BstYI RGATCY 3 cut(s) 22, 935, 1948
Bsu15I ATCGAT 1 cut(s) 1320
BsuRI GGCC 2 cut(s) 171, 251
BsuTUI ATCGAT 1 cut(s) 1320
BtsCI GGATG 4 cut(s) 1333, 1378, 1612, 1839
BtsI GCAGTG 3 cut(s) 60, 387, 1510
BtsIMutI CAGTG 4 cut(s) 60, 387, 1510, 1866
Cac8I GCNNGC 4 cut(s) 173, 177, 225, 637
CaiI CAGNNNCTG 1 cut(s) 563
CciI TCATGA 1 cut(s) 1243
Cfr13I GGNCC 2 cut(s) 622, 1280
ClaI ATCGAT 1 cut(s) 1320
Csp6I GTAC 4 cut(s) 420, 520, 568, 1876
CspCI CAANNNNNGTGG 2 cut(s) 674, 709
CviAII CATG 7 cut(s) 29, 79, 365, 456, 1244, 1702, 1906
CviQI GTAC 4 cut(s) 420, 520, 568, 1876
DdeI CTNAG 6 cut(s) 564, 576, 618, 951, 1032, 1812
DpnI GATC 7 cut(s) 24, 937, 1493, 1556, 1739, 1865, 1950
DpnII GATC 7 cut(s) 22, 935, 1491, 1554, 1737, 1863, 1948
Eam1104I CTCTTC 5 cut(s) 377, 990, 1003, 1539, 1587
EarI CTCTTC 5 cut(s) 377, 990, 1003, 1539, 1587
Eco130I CCWWGG 3 cut(s) 1261, 1355, 1929
Eco24I GRGCYC 1 cut(s) 187
Eco47I GGWCC 2 cut(s) 622, 1280
Eco57I CTGAAG 3 cut(s) 293, 674, 1560
Eco91I GGTNACC 1 cut(s) 1961
EcoNI CCTNNNNNAGG 1 cut(s) 879
EcoO65I GGTNACC 1 cut(s) 1961
EcoRI GAATTC 1 cut(s) 1508
EcoRII CCWGG 4 cut(s) 231, 343, 371, 543
EcoT14I CCWWGG 3 cut(s) 1261, 1355, 1929
EcoT38I GRGCYC 1 cut(s) 187
ErhI CCWWGG 3 cut(s) 1261, 1355, 1929
FaeI CATG 7 cut(s) 32, 82, 368, 459, 1247, 1705, 1909
FalI AAGNNNNNCTT 4 cut(s) 9, 41, 954, 986
FaqI GGGAC 2 cut(s) 898, 1652
FatI CATG 7 cut(s) 28, 78, 364, 455, 1243, 1701, 1905
FauI CCCGC 1 cut(s) 152
Fnu4HI GCNGC 3 cut(s) 966, 1079, 1226
FokI GGATG 4 cut(s) 1340, 1385, 1619, 1846
FriOI GRGCYC 1 cut(s) 187
Fsp4HI GCNGC 3 cut(s) 966, 1079, 1226
GluI GCNGC 3 cut(s) 966, 1079, 1226
GsuI CTGGAG 1 cut(s) 394
HaeIII GGCC 2 cut(s) 171, 251
HapII CCGG 1 cut(s) 1849
Hin1II CATG 7 cut(s) 32, 82, 368, 459, 1247, 1705, 1909
HindIII AAGCTT 1 cut(s) 708
HinfI GANTC 7 cut(s) 321, 489, 1049, 1247, 1535, 1705, 1780
HpaII CCGG 1 cut(s) 1849
HphI GGTGA 4 cut(s) 17, 989, 1242, 1564
Hpy166II GTNNAC 6 cut(s) 316, 570, 696, 805, 1283, 1938
Hpy188I TCNGA 8 cut(s) 90, 150, 595, 954, 1491, 1540, 1606, 1815
Hpy188III TCNNGA 7 cut(s) 668, 753, 769, 1055, 1244, 1273, 1769
Hpy8I GTNNAC 6 cut(s) 316, 570, 696, 805, 1283, 1938
HpyAV CCTTC 7 cut(s) 158, 622, 669, 721, 759, 885, 1810
HpyCH4III ACNGT 3 cut(s) 559, 700, 1870
HpyCH4IV ACGT 1 cut(s) 586
HpyCH4V TGCA 9 cut(s) 53, 205, 415, 1078, 1119, 1161, 1225, 1570, 1790
HpyF10VI GCNNNNNNNGC 8 cut(s) 38, 439, 728, 860, 1037, 1357, 1687, 1915
HpyF3I CTNAG 6 cut(s) 564, 576, 618, 951, 1032, 1812
HpySE526I ACGT 1 cut(s) 586
Hsp92II CATG 7 cut(s) 32, 82, 368, 459, 1247, 1705, 1909
Kzo9I GATC 7 cut(s) 22, 935, 1491, 1554, 1737, 1863, 1948
LguI GCTCTTC 1 cut(s) 377
LmnI GCTCC 5 cut(s) 789, 919, 1182, 1444, 1732
Lsp1109I GCAGC 3 cut(s) 952, 1090, 1237
LweI GCATC 1 cut(s) 1318
MaeII ACGT 1 cut(s) 586
MaeIII GTNAC 5 cut(s) 681, 1131, 1375, 1623, 1961
MalI GATC 7 cut(s) 24, 937, 1493, 1556, 1739, 1865, 1950
MboI GATC 7 cut(s) 22, 935, 1491, 1554, 1737, 1863, 1948
MflI RGATCY 3 cut(s) 22, 935, 1948
MhlI GDGCHC 4 cut(s) 187, 389, 794, 916
MlyI GAGTC 3 cut(s) 1058, 1714, 1789
MmeI TCCRAC 1 cut(s) 985
MseI TTAA 5 cut(s) 360, 450, 1065, 1146, 1530
MspA1I CMGCKG 2 cut(s) 575, 1081
MspI CCGG 1 cut(s) 1849
MspR9I CCNGG 5 cut(s) 233, 345, 373, 545, 1850
MvaI CCWGG 4 cut(s) 233, 345, 373, 545
MwoI GCNNNNNNNGC 8 cut(s) 38, 439, 728, 860, 1037, 1357, 1687, 1915
NciI CCSGG 1 cut(s) 1850
NdeII GATC 7 cut(s) 22, 935, 1491, 1554, 1737, 1863, 1948
NlaIII CATG 7 cut(s) 32, 82, 368, 459, 1247, 1705, 1909
NlaIV GGNNCC 4 cut(s) 342, 1440, 1665, 1927
NmuCI GTSAC 2 cut(s) 1131, 1375
NspI RCATGY 2 cut(s) 368, 1909
NspV TTCGAA 1 cut(s) 1954
PagI TCATGA 1 cut(s) 1243
PciSI GCTCTTC 1 cut(s) 377
PfeI GAWTC 4 cut(s) 321, 489, 1247, 1535
PflMI CCANNNNNTGG 1 cut(s) 631
PkrI GCNGC 3 cut(s) 967, 1080, 1227
PleI GAGTC 3 cut(s) 1057, 1713, 1788
PpsI GAGTC 3 cut(s) 1057, 1713, 1788
PshBI ATTAAT 1 cut(s) 1146
Psp6I CCWGG 4 cut(s) 231, 343, 371, 543
PspEI GGTNACC 1 cut(s) 1961
PspGI CCWGG 4 cut(s) 231, 343, 371, 543
PspN4I GGNNCC 4 cut(s) 342, 1440, 1665, 1927
PspPI GGNCC 2 cut(s) 622, 1280
PstNI CAGNNNCTG 1 cut(s) 563
PsuI RGATCY 3 cut(s) 22, 935, 1948
RsaI GTAC 4 cut(s) 421, 521, 569, 1877
RsaNI GTAC 4 cut(s) 420, 520, 568, 1876
SapI GCTCTTC 1 cut(s) 377
SaqAI TTAA 5 cut(s) 360, 450, 1065, 1146, 1530
SatI GCNGC 3 cut(s) 966, 1079, 1226
Sau3AI GATC 7 cut(s) 22, 935, 1491, 1554, 1737, 1863, 1948
Sau96I GGNCC 2 cut(s) 622, 1280
ScaI AGTACT 1 cut(s) 421
SchI GAGTC 3 cut(s) 1058, 1714, 1789
ScrFI CCNGG 5 cut(s) 233, 345, 373, 545, 1850
SduI GDGCHC 4 cut(s) 187, 389, 794, 916
SfaNI GCATC 1 cut(s) 1318
SfcI CTRYAG 1 cut(s) 393
SfuI TTCGAA 1 cut(s) 1954
SinI GGWCC 2 cut(s) 622, 1280
SsiI CCGC 5 cut(s) 39, 159, 573, 1040, 1081
SspI AATATT 2 cut(s) 1069, 1123
StyD4I CCNGG 5 cut(s) 231, 343, 371, 543, 1848
StyI CCWWGG 3 cut(s) 1261, 1355, 1929
TaaI ACNGT 3 cut(s) 559, 700, 1870
TaiI ACGT 1 cut(s) 589
TaqI TCGA 5 cut(s) 424, 1320, 1512, 1740, 1954
TatI WGTACW 4 cut(s) 419, 519, 567, 1875
TfiI GAWTC 4 cut(s) 321, 489, 1247, 1535
Tru1I TTAA 5 cut(s) 360, 450, 1065, 1146, 1530
Tru9I TTAA 5 cut(s) 360, 450, 1065, 1146, 1530
TscAI CASTG 4 cut(s) 60, 394, 1510, 1873
TseFI GTSAC 2 cut(s) 1131, 1375
TseI GCWGC 3 cut(s) 965, 1078, 1225
Tsp45I GTSAC 2 cut(s) 1131, 1375
TspDTI ATGAA 7 cut(s) 17, 29, 95, 482, 618, 1002, 1008
TspRI CASTG 4 cut(s) 60, 394, 1510, 1873
Van91I CCANNNNNTGG 1 cut(s) 631
VpaK11BI GGWCC 2 cut(s) 622, 1280
VspI ATTAAT 1 cut(s) 1146
XagI CCTNNNNNAGG 1 cut(s) 879
XapI RAATTY 6 cut(s) 99, 255, 513, 796, 1192, 1508
XceI RCATGY 2 cut(s) 368, 1909
XcmI CCANNNNNNNNNTGG 1 cut(s) 1210
ZrmI AGTACT 1 cut(s) 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.