FvH4_3g12461

Retrotransposon gag protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000291
Physical Location & Seq
Reverse (-)
7414944 .. 7421724
6781 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g12461.t1

Sequence Viewer

Length: 3549 bp
ATGTCCAAGTACATGGAGTATTTGGACTACGACGACGAAGAAGGGGTTTTCCCGATCAATTGTAGGCGTCCCAATGCTCATGGAGGCTTTCATCGTCCTAACAACTCAACCCTTCAGCCTCTCTCTAATCGCCACCAGAAATTCTCCACTCGAATCCGAGCTTCGCCTTTAGAGGTCCTCGATTGCAAAACCGCCAAGATTGTATACAAATTGGTGGGACGTGATGTATTCAAAGATCCAAATGGCTGCATTTCCACTGGGAAAGAAGCGAATGTTTATCACGCAACCAATTCTGATGGCCAGGAACTTGCAAATTTGCAATCAAAGCATACTAATGCAGGACCTAAATGGCAGAAGTCATTAAAGGTCTATAAGAGACGAGGTAAAGAAGGTTCCAAGGCTCAGGCTTTGATCTGGCATTCAGTAGATGATGATGTCCTACCCTCTGGTGTGATGCCTGAGGTTCTACTGAGCCAGGTTGATCCAATGGCTACTCGGTCAGGGAAAAACTTCAGGGGTCGTTTGACTGACAACCAGCGAGATGGTTTGCTACTGAAGATTTTGGAACAACTTGAGTTGATGGACACTCGGGTCAAAAAACTAGAGGATCATGGGAAAGCTTCCGCGACTGATACGACAGAAAAAGGAGAGGTCGACGTTGAGAACAACGACGTTGAGAACAACAACAATATCGACAAAGACGAGCCGGTCCAAGACAAGCAATCTTTGGGGGATTGGGTTAAGGATTTTCTCGAGAGTAGTGGTGAGCACAACAAAGTGGATACCGCTGGAGACATCACGAAGAAAATTAAGGTCGATGTTCCCGATTTCGAGGGGAGGACTGATCCTACAGTGTTTTCAGATTGGCTTGCTAGAATCGAAGAATATTTTGACTGGTACGACATGGATGATGAGCGCCGGGTGAGATATGTAAAGATGAAACTTGTGCTTTTAGCAAAAGTATGGTGGGCTGGTGTCGAGAATGATATAAGGAGGTTGGGACAGCACCCAATTAGTTCTTGGCAAGAGATGAAGGCCAACTTGCGAGAGAAATACATGCCATCGAATTACCTTGACAAACTATGCGACCAACTCACTGCTCATAGGCAAGAAGACATGGCAGTATCGGAGTACATGCAAAAGTTTGATGAGCTGAAGACAAGGAGTCAAATTGTAGAAGACCCAAGACAGACTCTTGCAAGGTTCAAAGCTGGGTTGAGGCCTGATATAAGGAGAGAGATGATTCGGCATCCGGTCTATAGTCTAGAACATGCTTTTCAGGTTGCTCTGGATTTGGAAGAATATTTGGGATACACCAAAGTGAAGAAATTTGGAGGTCAAGGTAACGAAGTCGTTCAAAAGAAAAACTTTGAGATCACTGGCAAGGCACGGCCAGGAACAACTCCATTGTTCAATCGAACACAAGATTCCAAACCTTTGTCTTCAAAGACCGCTGACTCAAGAACTTGTTTCAAGTGTGGGCTAGCAGGTCACATGGGATACCAATGCCCACAGAAGAATCTGCATATGGGGAAGGAGCAAGAGAAAGAAGCAGAACAACAAACAGCGGATGCTAGCTTTGACTATGGAGAATATGTTGATGATGACCTTGAGGAGGAAGGCTTAGACACTTCGCTTATCTCTGTCGTTAGGCGTATTTTGGCAGCTCCTAAAGTGGAAGAAGAGGATTGGCGTCGAACTGCCATTTTTCAAATGCTAGTTCGATGTGGGGACAAGGCACATAAGTTAATCATCGATGGTGGTAGCTGTATGAACGTTGTCTCGAGTTCAACGGTTGAGCGCCTTAAGCTTCCAACACAGCCTCACCCACAACCATACAGGGTAGCGTGGATTGATAGCACTCAGATTCCAACTGCTGAGTTGGAAAGGTACAGAGGCAGGACACCTAAGGATGATGTGAGCAAAAGGAAGCCTCTACACATTCTCACAAAGAAGAAATTCCAAGAAGAGAGTGAAGAAGCTAGAGTTGTATATGCCATAGTGGACAGAGAGAAGTGCTCTTTCATGAAGCCAAGTGTTGTGTTCTTAGGTTTCATTATTTCGTCTGATGGTGTTGAAGTGGACCCAATTAAAGTTAAAGCAATCGTAGATTGGCCAGTTCCTAAGTCCTTACAAGAGGCCAGGAGTTTTCAAGGTTTGGCCACATTTTACAGACGCTTTATCCGGAATTTCAGTACAATAATGGCACCTATTACTGATTGTTTGAAGGCTGGACAGTTTCAGTGGAGCAAAGCAGCTACTATTGCGTTCGAAGAAATTAAAAAGCGGATGACACAAGCTCCAGTTTTACGTCTTCCTGACTTTCTAATAGTGTTTGAGGTCACGTGTGATGCATCTCACGTCGGAATTGGAGGTGTGTTGAGCCAAGAAGGGCACCCCGTTGCTTTTTTCAGTGAGAAACTCAATGAAGCTAAGCAAAAGTATTCAACCTACGACAAGGAGTTCTATGCCGTAGTCCAGACCCTTCGGTATTGGCGATATTACCTTGTTCCCAACGAGTTTGTTCTATTTTCTGATCACGAGGCACTCAAGTATATCAATTCCCAACAGAAGCTCAGTCACCGACATGGTAAATGGGTCTCCTTCCTACAAGAATATTCTTTTGTTATTAAGCATAAATCTGGGGCTGAAAACAAAGCTGCTGATGCACTCAGCCGTGTGACTTATCTCCTGTCATCGACTGCCTTCCAGGTTGTGGGATTTGATTTACTTAAACGAGATTACTCTTCATGCAAGGATTTTGGCAGCTTGTATGCTGATCTTGCTGCGGGGCAGGGAAGGGAGCATGTTAATTTTTCCCTCCATGATGGTTACTTATTCAAAGGAACAAGGTTGTGCTTGCCTAACACCTCTGTTCGTGAACAAGTGATTTGGGAATTGCACAGTGGTGGTGCAGCAGAGCATTTTGGCAGAGACAAGTCAATTGCCATAGTGGAAGACAGGTTTTATTGGCCAAGTTTAAAACGAGATGTGGCCAAAATCATTTCTCAGTGCCGGACCTGCCAGGTTTGTAAAGAATCTGGTTTACTCCCACGGAAGCCAATTGATTTGGTTCCATTGCCACTTGCGGCACGACCAAGCGTTGAAGTTGAGTCATTCAGTAGCCATATTCGGGATATTCATGATGATGTTCGGCGAAAAATTGCCTTGAGTAATGACGGTTATAAAGCACATGCTGATTTACGGCGGCGTTTTGTTGAATTTAACACCGGTGGCATGGTTTTGGAGGCAGCTGCCACATCTATTGTTCCATTCCCACGTCCACCGTGCCCTCCTGACACCATAGAGGATATTGTTGACCATCAACTCATATCCACCAGAGGAGGTGGTTATCAAAAGTATCTCATCAAGTGGACGAATCGTCCACTTTCAGATTGTACTTGGATTACTGATGCTGAGCTGCAACAGTTGGACCCTGATCTGTATGACAGATTTCATGCTTTTAACTCGCCAGGGTCGAGTTCTTTCAAGCCCGGAGGAGATAATGCAGGACCTCCGGGCTTGAAAGAAGCCATTAAAGGTCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 Retrotrans_gag zf-CCHC

Protein Analysis

1183

Amino Acids

134.59

Weight (kDa)

7.36

Isoelectric Point (pI)

38.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ty3_capsid PF19259 272 - 450 8.9e-07 Ty3 transposon capsid-like protein
Retrotrans_gag PF03732 319 - 408 5.1e-11 Retrotransposon gag protein
RT_RNaseH_2 PF17919 749 - 842 6.1e-28 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 779 - 873 3.1e-30 RNase H-like domain found in reverse transcriptase
Integrase_H2C2 PF17921 956 - 1013 5.9e-16 Integrase zinc binding domain
zf-H2C2 PF09337 973 - 1009 4.7e-06 H2C2 zinc finger
Chromo PF00385 1102 - 1153 2.6e-08 Chromo (CHRromatin Organisation MOdifier) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000291)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00860
fragaria_vesca FvH4_1g23712 FvH4_1g29809 FvH4_1g29810 FvH4_2g02661 FvH4_2g13451 FvH4_2g17921 FvH4_2g17922 FvH4_2g19251 FvH4_2g19252 FvH4_2g28221 FvH4_2g35961 FvH4_3g10372 FvH4_3g12461 FvH4_3g12461 FvH4_3g27861 FvH4_3g34591 FvH4_3g40201 FvH4_3g44612 FvH4_4g08352 FvH4_4g12251 FvH4_4g12742 FvH4_4g13904 FvH4_4g14287 FvH4_4g15243 FvH4_4g24071 FvH4_4g33448 FvH4_5g21912 FvH4_5g39371 FvH4_6g14992 FvH4_6g15221 FvH4_6g20603 FvH4_6g31093 FvH4_6g32372 FvH4_6g33012
malus_domestica MD11G1009100.v1.1 MD13G1145000.v1.1 MD16G1138700.v1.1
prunus_persica Prupe.5G246300_v2.0.a1 Prupe.7G034800_v2.0.a1 Prupe.8G084500_v2.0.a1
pyrus_communis pycom01g18240 pycom04g00330 pycom05g09010 pycom06g01670 pycom06g01690 pycom06g07180 pycom06g11620 pycom10g05720 pycom1134g00040 pycom1134g00060 pycom12486g00010 pycom12555g00230 pycom13g21670 pycom13g23130 pycom13g23140 pycom14g10580
rosa_chinensis RchiOBHm_Chr1g0330691 RchiOBHm_Chr2g0106171 RchiOBHm_Chr2g0134731 RchiOBHm_Chr2g0142791 RchiOBHm_Chr2g0149861 RchiOBHm_Chr3g0452401 RchiOBHm_Chr3g0461881 RchiOBHm_Chr4g0401341 RchiOBHm_Chr5g0075641 RchiOBHm_Chr6g0265961 RchiOBHm_Chr7g0200201 RchiOBHm_Chr7g0237811
rosa_laevigata RLG00000002773
rosa_multiflora Rmu_co8037806.1_g000001 Rmu_co8445989.1_g000001 Rmu_sc0000745.1_g000039 Rmu_sc0004448.1_g000029 Rmu_sc0004488.1_g000002 Rmu_sc0004591.1_g000018 Rmu_sc0005065.1_g000030 Rmu_sc0005150.1_g000005 Rmu_sc0005654.1_g000011 Rmu_sc0006986.1_g000016
rosa_roxburghii Rroxscaffold_164G00436490 Rroxscaffold_175G00432490 Rroxscaffold_1G00059440 Rroxscaffold_1G00064410 Rroxscaffold_2G00100310 Rroxscaffold_2G00128170 Rroxscaffold_3G00239420 Rroxscaffold_3G00264970 Rroxscaffold_3G00271550 Rroxscaffold_4G00300240 Rroxscaffold_5G00385050 Rroxscaffold_6G00399720
rosa_rugosa Rorug02G0252200
rosa_samantha Rh2DG251900 Rh7CG329900
rosa_wichuraiana Rw0G004800 Rw1G000850 Rw1G022350 Rw2G027030 Rw2G027760 Rw2G028410 Rw2G029130 Rw2G029390 Rw2G032490 Rw2G039460 Rw2G047800 Rw2G050340 Rw3G026430 Rw4G018370 Rw4G030750 Rw4G033140 Rw5G011950 Rw5G012010 Rw5G029280 Rw5G040190 Rw5G044570 Rw5G048240 Rw6G000340 Rw6G010140 Rw6G026480 Rw7G033750 Rw7G037250 Rw7G042080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 3186
AasI GACNNNNNNGTC 2 cut(s) 590, 707
Acc36I ACCTGC 2 cut(s) 1478, 3029
AccB1I GGYRCC 2 cut(s) 2206, 2394
AccB7I CCANNNNNTGG 1 cut(s) 2716
AccI GTMKAC 2 cut(s) 204, 654
AccII CGCG 1 cut(s) 626
AccIII TCCGGA 1 cut(s) 2184
AciI CCGC 9 cut(s) 192, 624, 786, 1452, 1568, 2287, 2789, 3089, 3208
AclI AACGTT 1 cut(s) 1776
AclWI GGATC 4 cut(s) 230, 476, 615, 839
AcoI YGGCCR 6 cut(s) 298, 1391, 2114, 2160, 2972, 2994
AcsI RAATTY 6 cut(s) 140, 313, 1328, 1958, 2188, 3221
AcuI CTGAAG 4 cut(s) 98, 496, 575, 1175
AcvI CACGTG 1 cut(s) 2346
AcyI GRCGYC 2 cut(s) 67, 1693
AfaI GTAC 6 cut(s) 11, 899, 1133, 1892, 2197, 3400
AfiI CCNNNNNNNGG 3 cut(s) 1615, 2716, 3133
AflII CTTAAG 1 cut(s) 1805
AflIII ACRYGT 1 cut(s) 2345
AgeI ACCGGT 1 cut(s) 3230
AhdI GACNNNNNGTC 2 cut(s) 1164, 3381
AjiI CACGTC 3 cut(s) 221, 2362, 3281
AjnI CCWGG 7 cut(s) 300, 474, 1393, 2141, 2709, 3024, 3472
AleI CACNNNNGTG 2 cut(s) 1319, 2907
Alw21I GWGCWC 2 cut(s) 771, 2021
Alw26I GTCTC 5 cut(s) 370, 786, 1786, 2605, 2928
AlwI GGATC 4 cut(s) 230, 476, 615, 839
Ama87I CYCGRG 3 cut(s) 588, 752, 1783
Aor13HI TCCGGA 1 cut(s) 2184
AoxI GGCC 9 cut(s) 298, 1035, 1220, 1391, 2114, 2139, 2160, 2972, 2994
ApoI RAATTY 6 cut(s) 140, 313, 1328, 1958, 2188, 3221
AsiGI ACCGGT 1 cut(s) 3230
Asp700I GAANNNNTTC 3 cut(s) 509, 1353, 1958
AspLEI GCGC 2 cut(s) 918, 1803
AspS9I GGNCC 7 cut(s) 175, 341, 709, 2083, 3018, 3433, 3512
AsuC2I CCSGG 3 cut(s) 920, 3495, 3519
AsuHPI GGTGA 4 cut(s) 776, 934, 1817, 2573
AsuII TTCGAA 1 cut(s) 2271
AsuNHI GCTAGC 2 cut(s) 1483, 1574
AvaI CYCGRG 3 cut(s) 588, 752, 1783
AvaII GGWCC 7 cut(s) 175, 341, 709, 2083, 3018, 3433, 3512
AxyI CCTNAGG 2 cut(s) 459, 1908
BaeGI GKGCMC 2 cut(s) 2397, 3293
BalI TGGCCA 5 cut(s) 300, 2116, 2162, 2974, 2996
BanI GGYRCC 2 cut(s) 2206, 2394
BauI CACGAG 1 cut(s) 2540
BbrPI CACGTG 1 cut(s) 2346
BbsI GAAGAC 6 cut(s) 1119, 1163, 1185, 1434, 2306, 2964
Bbv12I GWGCWC 2 cut(s) 771, 2021
BccI CCATC 8 cut(s) 290, 536, 574, 1069, 1751, 2063, 2822, 3330
BceAI ACGGC 4 cut(s) 1406, 2456, 2661, 3221
BciT130I CCWGG 7 cut(s) 302, 476, 1395, 2143, 2711, 3026, 3474
BciVI GTATCC 3 cut(s) 775, 1304, 1493
BclI TGATCA 1 cut(s) 2536
BcnI CCSGG 3 cut(s) 920, 3495, 3519
BcoDI GTCTC 5 cut(s) 370, 786, 1786, 2605, 2928
BfaI CTAG 7 cut(s) 602, 873, 1265, 1484, 1575, 1718, 1983
BfmI CTRYAG 2 cut(s) 849, 1258
BfoI RGCGCY 2 cut(s) 919, 1804
BfrI CTTAAG 1 cut(s) 1805
BfuAI ACCTGC 2 cut(s) 1478, 3029
BfuI GTATCC 3 cut(s) 775, 1304, 1493
BlpI GCTNAGC 2 cut(s) 2433, 3417
Bme18I GGWCC 7 cut(s) 175, 341, 709, 2083, 3018, 3433, 3512
BmeRI GACNNNNNGTC 2 cut(s) 1164, 3381
BmeT110I CYCGRG 3 cut(s) 588, 752, 1783
BmgBI CACGTC 3 cut(s) 221, 2362, 3281
BmgT120I GGNCC 7 cut(s) 175, 341, 709, 2083, 3018, 3433, 3512
BmiI GGNNCC 6 cut(s) 394, 2085, 2208, 2396, 3075, 3435
BmrI ACTGGG 1 cut(s) 267
BmsI GCATC 7 cut(s) 444, 1258, 1561, 2341, 2363, 2656, 3403
BmtI GCTAGC 2 cut(s) 1487, 1578
BmuI ACTGGG 1 cut(s) 267
BpiI GAAGAC 6 cut(s) 1119, 1163, 1185, 1434, 2306, 2964
BplI GAGNNNNNCTC 2 cut(s) 2003, 2035
BpmI CTGGAG 2 cut(s) 810, 2286
Bpu10I CCTNAGC 1 cut(s) 402
Bpu1102I GCTNAGC 2 cut(s) 2433, 3417
Bpu14I TTCGAA 1 cut(s) 2271
BpuEI CTTGAG 5 cut(s) 593, 1444, 1631, 2534, 3190
BpuMI CCSGG 3 cut(s) 920, 3495, 3519
Bsa29I ATCGAT 1 cut(s) 1755
BsaAI YACGTR 1 cut(s) 2346
BsaHI GRCGYC 2 cut(s) 67, 1693
BsaI GGTCTC 1 cut(s) 2605
BsaJI CCNNGG 3 cut(s) 396, 3053, 3473
BsaWI WCCGGW 3 cut(s) 1252, 2184, 3230
BsaXI ACNNNNNCTCC 4 cut(s) 1581, 1611, 2284, 2314
Bsc4I CCNNNNNNNGG 3 cut(s) 1615, 2716, 3133
Bse118I RCCGGY 2 cut(s) 706, 3230
Bse1I ACTGG 5 cut(s) 262, 899, 1384, 2117, 2303
Bse21I CCTNAGG 2 cut(s) 459, 1908
Bse3DI GCAATG 1 cut(s) 3077
BseAI TCCGGA 1 cut(s) 2184
BseBI CCWGG 7 cut(s) 302, 476, 1395, 2143, 2711, 3026, 3474
BseCI ATCGAT 1 cut(s) 1755
BseDI CCNNGG 3 cut(s) 396, 3053, 3473
BseGI GGATG 5 cut(s) 913, 1249, 1576, 1918, 2295
BseLI CCNNNNNNNGG 3 cut(s) 1615, 2716, 3133
BseMI GCAATG 1 cut(s) 3077
BseMII CTCAG 9 cut(s) 416, 450, 461, 1869, 1877, 2590, 2686, 3023, 3408
BseNI ACTGG 5 cut(s) 262, 899, 1384, 2117, 2303
BseRI GAGGAG 3 cut(s) 1628, 3357, 3513
BseSI GKGCMC 2 cut(s) 2397, 3293
BseYI CCCAGC 1 cut(s) 1211
BsgI GTGCAG 1 cut(s) 2934
Bsh1236I CGCG 1 cut(s) 626
BshFI GGCC 9 cut(s) 300, 1037, 1222, 1393, 2116, 2141, 2162, 2974, 2996
BshNI GGYRCC 2 cut(s) 2206, 2394
BshTI ACCGGT 1 cut(s) 3230
BshVI ATCGAT 1 cut(s) 1755
BsiHKAI GWGCWC 2 cut(s) 771, 2021
BsiHKCI CYCGRG 3 cut(s) 588, 752, 1783
BsiSI CCGG 8 cut(s) 707, 919, 1253, 2185, 3016, 3231, 3495, 3518
BslFI GGGAC 4 cut(s) 54, 231, 1014, 1745
BslI CCNNNNNNNGG 3 cut(s) 1615, 2716, 3133
BsmAI GTCTC 5 cut(s) 370, 786, 1786, 2605, 2928
BsmBI CGTCTC 1 cut(s) 370
BsmFI GGGAC 4 cut(s) 54, 231, 1014, 1745
BsmI GAATGC 1 cut(s) 418
BsnI GGCC 9 cut(s) 300, 1037, 1222, 1393, 2116, 2141, 2162, 2974, 2996
Bso31I GGTCTC 1 cut(s) 2605
BsoBI CYCGRG 3 cut(s) 588, 752, 1783
Bsp119I TTCGAA 1 cut(s) 2271
Bsp1286I GDGCHC 4 cut(s) 771, 2021, 2397, 3293
Bsp13I TCCGGA 1 cut(s) 2184
Bsp1720I GCTNAGC 2 cut(s) 2433, 3417
BspACI CCGC 9 cut(s) 192, 624, 786, 1452, 1568, 2287, 2789, 3089, 3208
BspANI GGCC 9 cut(s) 300, 1037, 1222, 1393, 2116, 2141, 2162, 2974, 2996
BspCNI CTCAG 9 cut(s) 415, 451, 462, 1870, 1876, 2589, 2685, 3022, 3409
BspDI ATCGAT 1 cut(s) 1755
BspEI TCCGGA 1 cut(s) 2184
BspFNI CGCG 1 cut(s) 626
BspHI TCATGA 2 cut(s) 2025, 3142
BspLI GGNNCC 6 cut(s) 394, 2085, 2208, 2396, 3075, 3435
BspMI ACCTGC 2 cut(s) 1478, 3029
BspOI GCTAGC 2 cut(s) 1487, 1578
BspPI GGATC 4 cut(s) 230, 476, 615, 839
BspT104I TTCGAA 1 cut(s) 2271
BspT107I GGYRCC 2 cut(s) 2206, 2394
BspTI CTTAAG 1 cut(s) 1805
BspTNI GGTCTC 1 cut(s) 2605
BsrDI GCAATG 1 cut(s) 3077
BsrFI RCCGGY 2 cut(s) 706, 3230
BsrI ACTGG 5 cut(s) 262, 899, 1384, 2117, 2303
BssAI RCCGGY 2 cut(s) 706, 3230
BssECI CCNNGG 3 cut(s) 396, 3053, 3473
BssNAI GTATAC 1 cut(s) 205
BssNI GRCGYC 2 cut(s) 67, 1693
BssSI CACGAG 1 cut(s) 2540
BssT1I CCWWGG 1 cut(s) 396
Bst1107I GTATAC 1 cut(s) 205
Bst2BI CACGAG 1 cut(s) 2540
Bst2UI CCWGG 7 cut(s) 302, 476, 1395, 2143, 2711, 3026, 3474
Bst4CI ACNGT 7 cut(s) 853, 1795, 2238, 2906, 3182, 3288, 3429
Bst6I CTCTTC 3 cut(s) 1677, 1962, 2752
BstACI GRCGYC 2 cut(s) 67, 1693
BstAFI CTTAAG 1 cut(s) 1805
BstBAI YACGTR 1 cut(s) 2346
BstBI TTCGAA 1 cut(s) 2271
BstC8I GCNNGC 4 cut(s) 870, 1485, 1576, 2861
BstDSI CCRYGG 1 cut(s) 3053
BstENI CCTNNNNNAGG 1 cut(s) 1613
BstF5I GGATG 5 cut(s) 913, 1249, 1576, 1918, 2295
BstFNI CGCG 1 cut(s) 626
BstH2I RGCGCY 2 cut(s) 919, 1804
BstHHI GCGC 2 cut(s) 918, 1803
BstMAI GTCTC 5 cut(s) 370, 786, 1786, 2605, 2928
BstMWI GCNNNNNNNGC 6 cut(s) 325, 1807, 2264, 2666, 2783, 3021
BstNI CCWGG 7 cut(s) 302, 476, 1395, 2143, 2711, 3026, 3474
BstNSI RCATGY 5 cut(s) 1060, 1138, 1274, 2810, 3197
BstSFI CTRYAG 2 cut(s) 849, 1258
BstSLI GKGCMC 2 cut(s) 2397, 3293
BstUI CGCG 1 cut(s) 626
BstV2I GAAGAC 6 cut(s) 1119, 1163, 1185, 1434, 2306, 2964
BstX2I RGATCY 1 cut(s) 235
BstXI CCANNNNNNTGG 2 cut(s) 13, 542
BstYI RGATCY 1 cut(s) 235
BstZ17I GTATAC 1 cut(s) 205
Bsu15I ATCGAT 1 cut(s) 1755
Bsu36I CCTNAGG 2 cut(s) 459, 1908
BsuI GTATCC 3 cut(s) 775, 1304, 1493
BsuRI GGCC 9 cut(s) 300, 1037, 1222, 1393, 2116, 2141, 2162, 2974, 2996
BsuTUI ATCGAT 1 cut(s) 1755
BtgI CCRYGG 1 cut(s) 3053
BtrI CACGTC 3 cut(s) 221, 2362, 3281
BtsCI GGATG 5 cut(s) 913, 1249, 1576, 1918, 2295
BtsI GCAGTG 1 cut(s) 1095
BtsIMutI CAGTG 8 cut(s) 255, 858, 1095, 1377, 2249, 2419, 2911, 3017
BveI ACCTGC 2 cut(s) 1478, 3029
Cac8I GCNNGC 4 cut(s) 870, 1485, 1576, 2861
CciI TCATGA 2 cut(s) 2025, 3142
CfoI GCGC 2 cut(s) 918, 1803
Cfr10I RCCGGY 2 cut(s) 706, 3230
Cfr13I GGNCC 7 cut(s) 175, 341, 709, 2083, 3018, 3433, 3512
ClaI ATCGAT 1 cut(s) 1755
CseI GACGC 3 cut(s) 56, 1682, 2184
Csp6I GTAC 6 cut(s) 10, 898, 1132, 1891, 2196, 3399
CspAI ACCGGT 1 cut(s) 3230
CspCI CAANNNNNGTGG 2 cut(s) 3247, 3282
CviQI GTAC 6 cut(s) 10, 898, 1132, 1891, 2196, 3399
DraI TTTAAA 1 cut(s) 2982
DrdI GACNNNNNNGTC 2 cut(s) 590, 707
DriI GACNNNNNGTC 2 cut(s) 1164, 3381
DseDI GACNNNNNNGTC 2 cut(s) 590, 707
EaeI YGGCCR 6 cut(s) 298, 1391, 2114, 2160, 2972, 2994
Eam1104I CTCTTC 3 cut(s) 1677, 1962, 2752
Eam1105I GACNNNNNGTC 2 cut(s) 1164, 3381
EarI CTCTTC 3 cut(s) 1677, 1962, 2752
Eco130I CCWWGG 1 cut(s) 396
Eco147I AGGCCT 1 cut(s) 1222
Eco31I GGTCTC 1 cut(s) 2605
Eco47I GGWCC 7 cut(s) 175, 341, 709, 2083, 3018, 3433, 3512
Eco57I CTGAAG 4 cut(s) 98, 496, 575, 1175
Eco72I CACGTG 1 cut(s) 2346
Eco81I CCTNAGG 2 cut(s) 459, 1908
Eco88I CYCGRG 3 cut(s) 588, 752, 1783
EcoNI CCTNNNNNAGG 1 cut(s) 1613
EcoO109I RGGNCCY 3 cut(s) 175, 341, 3512
EcoRII CCWGG 7 cut(s) 300, 474, 1393, 2141, 2709, 3024, 3472
EcoT14I CCWWGG 1 cut(s) 396
EcoT22I ATGCAT 1 cut(s) 2356
ErhI CCWWGG 1 cut(s) 396
Esp3I CGTCTC 1 cut(s) 370
FalI AAGNNNNNCTT 4 cut(s) 1025, 1057, 1352, 1384
FaqI GGGAC 4 cut(s) 54, 231, 1014, 1745
FauI CCCGC 1 cut(s) 2782
FauNDI CATATG 1 cut(s) 1527
FbaI TGATCA 1 cut(s) 2536
FblI GTMKAC 2 cut(s) 204, 654
FokI GGATG 5 cut(s) 920, 1236, 1583, 1925, 2302
FspBI CTAG 7 cut(s) 602, 873, 1265, 1484, 1575, 1718, 1983
GlaI GCGC 2 cut(s) 917, 1802
GsaI CCCAGC 1 cut(s) 1215
GsuI CTGGAG 2 cut(s) 810, 2286
HaeII RGCGCY 2 cut(s) 919, 1804
HaeIII GGCC 9 cut(s) 300, 1037, 1222, 1393, 2116, 2141, 2162, 2974, 2996
HapII CCGG 8 cut(s) 707, 919, 1253, 2185, 3016, 3231, 3495, 3518
HgaI GACGC 3 cut(s) 56, 1682, 2184
HhaI GCGC 2 cut(s) 918, 1803
Hin1I GRCGYC 2 cut(s) 67, 1693
Hin6I GCGC 2 cut(s) 916, 1801
HinP1I GCGC 2 cut(s) 916, 1801
HincII GTYRAC 2 cut(s) 655, 3319
HindII GTYRAC 2 cut(s) 655, 3319
HindIII AAGCTT 2 cut(s) 618, 1808
HpaII CCGG 8 cut(s) 707, 919, 1253, 2185, 3016, 3231, 3495, 3518
HphI GGTGA 4 cut(s) 776, 934, 1817, 2573
Hpy188I TCNGA 9 cut(s) 158, 295, 862, 1129, 1866, 2068, 2366, 2536, 3394
Hpy99I CGWCG 6 cut(s) 35, 38, 659, 674, 1698, 2366
HpyCH4III ACNGT 7 cut(s) 853, 1795, 2238, 2906, 3182, 3288, 3429
HpyCH4IV ACGT 8 cut(s) 220, 657, 672, 1776, 2311, 2345, 2361, 3280
HpyF10VI GCNNNNNNNGC 6 cut(s) 325, 1807, 2264, 2666, 2783, 3021
HpySE526I ACGT 8 cut(s) 220, 657, 672, 1776, 2311, 2345, 2361, 3280
Hsp92I GRCGYC 2 cut(s) 67, 1693
HspAI GCGC 2 cut(s) 916, 1801
Kpn2I TCCGGA 1 cut(s) 2184
Ksp22I TGATCA 1 cut(s) 2536
LmnI GCTCC 5 cut(s) 1537, 1672, 2247, 2305, 2803
LweI GCATC 7 cut(s) 444, 1258, 1561, 2341, 2363, 2656, 3403
MaeI CTAG 7 cut(s) 602, 873, 1265, 1484, 1575, 1718, 1983
MaeII ACGT 8 cut(s) 220, 657, 672, 1776, 2311, 2345, 2361, 3280
MaeIII GTNAC 6 cut(s) 1343, 1490, 2341, 2579, 2680, 2831
MfeI CAATTG 3 cut(s) 58, 2943, 3063
MflI RGATCY 1 cut(s) 235
MhlI GDGCHC 4 cut(s) 771, 2021, 2397, 3293
MlsI TGGCCA 5 cut(s) 300, 2116, 2162, 2974, 2996
MluNI TGGCCA 5 cut(s) 300, 2116, 2162, 2974, 2996
MlyI GAGTC 4 cut(s) 1174, 1186, 1451, 3122
MmeI TCCRAC 5 cut(s) 1838, 1863, 1895, 2344, 3411
Mox20I TGGCCA 5 cut(s) 300, 2116, 2162, 2974, 2996
Mph1103I ATGCAT 1 cut(s) 2356
MroI TCCGGA 1 cut(s) 2184
MroXI GAANNNNTTC 3 cut(s) 509, 1353, 1958
MscI TGGCCA 5 cut(s) 300, 2116, 2162, 2974, 2996
MslI CAYNNNNRTG 5 cut(s) 333, 1319, 2586, 2907, 3147
Msp20I TGGCCA 5 cut(s) 300, 2116, 2162, 2974, 2996
MspA1I CMGCKG 4 cut(s) 788, 1454, 1568, 3254
MspCI CTTAAG 1 cut(s) 1805
MspI CCGG 8 cut(s) 707, 919, 1253, 2185, 3016, 3231, 3495, 3518
MunI CAATTG 3 cut(s) 58, 2943, 3063
Mva1269I GAATGC 1 cut(s) 418
MvaI CCWGG 7 cut(s) 302, 476, 1395, 2143, 2711, 3026, 3474
MvnI CGCG 1 cut(s) 626
MwoI GCNNNNNNNGC 6 cut(s) 325, 1807, 2264, 2666, 2783, 3021
NciI CCSGG 3 cut(s) 920, 3495, 3519
NdeI CATATG 1 cut(s) 1527
NheI GCTAGC 2 cut(s) 1483, 1574
NlaIV GGNNCC 6 cut(s) 394, 2085, 2208, 2396, 3075, 3435
NmuCI GTSAC 4 cut(s) 1490, 2341, 2579, 2680
NsiI ATGCAT 1 cut(s) 2356
NspI RCATGY 5 cut(s) 1060, 1138, 1274, 2810, 3197
NspV TTCGAA 1 cut(s) 2271
OliI CACNNNNGTG 2 cut(s) 1319, 2907
PaeR7I CTCGAG 2 cut(s) 752, 1783
PagI TCATGA 2 cut(s) 2025, 3142
PceI AGGCCT 1 cut(s) 1222
PcsI WCGNNNNNNNCGW 4 cut(s) 699, 822, 2494, 3476
PctI GAATGC 1 cut(s) 418
PdmI GAANNNNTTC 3 cut(s) 509, 1353, 1958
PfeI GAWTC 8 cut(s) 153, 876, 1243, 1427, 1519, 1867, 3038, 3379
PflMI CCANNNNNTGG 1 cut(s) 2716
PinAI ACCGGT 1 cut(s) 3230
PleI GAGTC 4 cut(s) 1173, 1186, 1451, 3121
PmaCI CACGTG 1 cut(s) 2346
PmlI CACGTG 1 cut(s) 2346
PpsI GAGTC 4 cut(s) 1173, 1186, 1451, 3121
Ppu21I YACGTR 1 cut(s) 2346
PpuMI RGGWCCY 3 cut(s) 175, 341, 3512
PsiI TTATAA 1 cut(s) 3186
Psp1406I AACGTT 1 cut(s) 1776
Psp5II RGGWCCY 3 cut(s) 175, 341, 3512
Psp6I CCWGG 7 cut(s) 300, 474, 1393, 2141, 2709, 3024, 3472
PspCI CACGTG 1 cut(s) 2346
PspFI CCCAGC 1 cut(s) 1211
PspGI CCWGG 7 cut(s) 300, 474, 1393, 2141, 2709, 3024, 3472
PspN4I GGNNCC 6 cut(s) 394, 2085, 2208, 2396, 3075, 3435
PspPI GGNCC 7 cut(s) 175, 341, 709, 2083, 3018, 3433, 3512
PspPPI RGGWCCY 3 cut(s) 175, 341, 3512
PsrI GAACNNNNNNTAC 2 cut(s) 376, 408
PsuI RGATCY 1 cut(s) 235
PvuII CAGCTG 1 cut(s) 3254
RsaI GTAC 6 cut(s) 11, 899, 1133, 1892, 2197, 3400
RsaNI GTAC 6 cut(s) 10, 898, 1132, 1891, 2196, 3399
RseI CAYNNNNRTG 5 cut(s) 333, 1319, 2586, 2907, 3147
SalI GTCGAC 1 cut(s) 653
Sau96I GGNCC 7 cut(s) 175, 341, 709, 2083, 3018, 3433, 3512
SchI GAGTC 4 cut(s) 1174, 1186, 1451, 3122
SduI GDGCHC 4 cut(s) 771, 2021, 2397, 3293
SfaNI GCATC 7 cut(s) 444, 1258, 1561, 2341, 2363, 2656, 3403
SfcI CTRYAG 2 cut(s) 849, 1258
Sfr274I CTCGAG 2 cut(s) 752, 1783
SfuI TTCGAA 1 cut(s) 2271
SgrAI CRCCGGYG 1 cut(s) 3230
SinI GGWCC 7 cut(s) 175, 341, 709, 2083, 3018, 3433, 3512
SlaI CTCGAG 2 cut(s) 752, 1783
SmiMI CAYNNNNRTG 5 cut(s) 333, 1319, 2586, 2907, 3147
SmlI CTYRAG 8 cut(s) 572, 752, 1459, 1610, 1783, 1805, 2549, 3169
SmoI CTYRAG 8 cut(s) 572, 752, 1459, 1610, 1783, 1805, 2549, 3169
SseBI AGGCCT 1 cut(s) 1222
SsiI CCGC 9 cut(s) 192, 624, 786, 1452, 1568, 2287, 2789, 3089, 3208
SspI AATATT 3 cut(s) 887, 1304, 2618
SspMI CTAG 7 cut(s) 602, 873, 1265, 1484, 1575, 1718, 1983
StuI AGGCCT 1 cut(s) 1222
StyI CCWWGG 1 cut(s) 396
TaaI ACNGT 7 cut(s) 853, 1795, 2238, 2906, 3182, 3288, 3429
TaiI ACGT 8 cut(s) 223, 660, 675, 1779, 2314, 2348, 2364, 3283
TaqII GACCGA 1 cut(s) 486
TatI WGTACW 4 cut(s) 9, 1131, 2195, 3398
TauI GCSGC 2 cut(s) 3092, 3211
TfiI GAWTC 8 cut(s) 153, 876, 1243, 1427, 1519, 1867, 3038, 3379
TscAI CASTG 8 cut(s) 262, 858, 1102, 1384, 2249, 2419, 2911, 3017
TseFI GTSAC 4 cut(s) 1490, 2341, 2579, 2680
Tsp45I GTSAC 4 cut(s) 1490, 2341, 2579, 2680
TspGWI ACGGA 1 cut(s) 3070
TspRI CASTG 8 cut(s) 262, 858, 1102, 1384, 2249, 2419, 2911, 3017
Van91I CCANNNNNTGG 1 cut(s) 2716
Vha464I CTTAAG 1 cut(s) 1805
VpaK11BI GGWCC 7 cut(s) 175, 341, 709, 2083, 3018, 3433, 3512
XagI CCTNNNNNAGG 1 cut(s) 1613
XapI RAATTY 6 cut(s) 140, 313, 1328, 1958, 2188, 3221
XbaI TCTAGA 1 cut(s) 1264
XceI RCATGY 5 cut(s) 1060, 1138, 1274, 2810, 3197
XcmI CCANNNNNNNNNTGG 1 cut(s) 1017
XhoI CTCGAG 2 cut(s) 752, 1783
XmiI GTMKAC 2 cut(s) 204, 654
XmnI GAANNNNTTC 3 cut(s) 509, 1353, 1958
XspI CTAG 7 cut(s) 602, 873, 1265, 1484, 1575, 1718, 1983
Zsp2I ATGCAT 1 cut(s) 2356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.