DNA RNA polymerases superfamily protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_1 | PF00078 | 480 - 638 | 1.5e-41 | Reverse transcriptase (RNA-dependent DNA polymerase) |
| RT_RNaseH_2 | PF17919 | 701 - 794 | 1.1e-30 | RNase H-like domain found in reverse transcriptase |
| RT_RNaseH | PF17917 | 726 - 825 | 3.1e-31 | RNase H-like domain found in reverse transcriptase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1987 |
| AccB1I | GGYRCC | 1 cut(s) | 1298 |
| AccI | GTMKAC | 1 cut(s) | 689 |
| AciI | CCGC | 4 cut(s) | 432, 770, 1044, 1823 |
| AclWI | GGATC | 1 cut(s) | 2150 |
| AcsI | RAATTY | 5 cut(s) | 1087, 1106, 2093, 2375, 2546 |
| AcuI | CTGAAG | 4 cut(s) | 378, 1254, 2103, 2507 |
| AdeI | CACNNNGTG | 1 cut(s) | 649 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 536, 1742, 2557 |
| AflII | CTTAAG | 1 cut(s) | 1580 |
| AflIII | ACRYGT | 2 cut(s) | 692, 939 |
| AjnI | CCWGG | 1 cut(s) | 821 |
| AleI | CACNNNNGTG | 1 cut(s) | 1037 |
| Alw21I | GWGCWC | 2 cut(s) | 322, 2599 |
| Alw26I | GTCTC | 2 cut(s) | 345, 946 |
| AlwI | GGATC | 1 cut(s) | 2150 |
| AoxI | GGCC | 6 cut(s) | 123, 1316, 1632, 1861, 1970, 2578 |
| ApeKI | GCWGC | 5 cut(s) | 103, 161, 767, 2561, 2607 |
| ApoI | RAATTY | 5 cut(s) | 1087, 1106, 2093, 2375, 2546 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1079, 1111 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2546 |
| AspLEI | GCGC | 1 cut(s) | 887 |
| AspS9I | GGNCC | 3 cut(s) | 605, 1058, 2578 |
| AsuC2I | CCSGG | 2 cut(s) | 411, 1296 |
| AsuHPI | GGTGA | 8 cut(s) | 254, 427, 590, 791, 1628, 1681, 2143, 2467 |
| AvaII | GGWCC | 2 cut(s) | 605, 1058 |
| BaeGI | GKGCMC | 1 cut(s) | 1044 |
| BanI | GGYRCC | 1 cut(s) | 1298 |
| BanII | GRGCYC | 1 cut(s) | 2599 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1167, 1199 |
| BauI | CACGAG | 1 cut(s) | 1991 |
| BbsI | GAAGAC | 6 cut(s) | 93, 384, 412, 1366, 1634, 2257 |
| Bbv12I | GWGCWC | 2 cut(s) | 322, 2599 |
| BbvI | GCAGC | 5 cut(s) | 115, 148, 754, 2548, 2619 |
| BccI | CCATC | 7 cut(s) | 464, 596, 653, 980, 1442, 1490, 1967 |
| BceAI | ACGGC | 1 cut(s) | 1647 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1979, 2013 |
| BciT130I | CCWGG | 1 cut(s) | 823 |
| BclI | TGATCA | 4 cut(s) | 139, 1540, 1939, 2392 |
| BcnI | CCSGG | 2 cut(s) | 411, 1296 |
| BcoDI | GTCTC | 2 cut(s) | 345, 946 |
| BfaI | CTAG | 7 cut(s) | 9, 81, 264, 354, 1047, 2439, 2519 |
| BfmI | CTRYAG | 4 cut(s) | 1245, 1783, 2151, 2299 |
| BfoI | RGCGCY | 1 cut(s) | 888 |
| BfrI | CTTAAG | 1 cut(s) | 1580 |
| BfuAI | ACCTGC | 1 cut(s) | 1987 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1681 |
| BglII | AGATCT | 1 cut(s) | 568 |
| BisI | GCNGC | 6 cut(s) | 104, 162, 768, 771, 2562, 2608 |
| BlsI | GCNGC | 6 cut(s) | 105, 163, 769, 772, 2563, 2609 |
| BmcAI | AGTACT | 2 cut(s) | 79, 1702 |
| Bme1390I | CCNGG | 3 cut(s) | 411, 823, 1296 |
| Bme18I | GGWCC | 2 cut(s) | 605, 1058 |
| BmgT120I | GGNCC | 3 cut(s) | 605, 1058, 2578 |
| BmiI | GGNNCC | 2 cut(s) | 1300, 2064 |
| BmrFI | CCNGG | 3 cut(s) | 411, 823, 1296 |
| BmsI | GCATC | 5 cut(s) | 754, 919, 1662, 2197, 2465 |
| BpiI | GAAGAC | 6 cut(s) | 93, 384, 412, 1366, 1634, 2257 |
| BpmI | CTGGAG | 1 cut(s) | 513 |
| Bpu10I | CCTNAGC | 2 cut(s) | 21, 1188 |
| BpuEI | CTTGAG | 4 cut(s) | 298, 1426, 2390, 2406 |
| BpuMI | CCSGG | 2 cut(s) | 411, 1296 |
| BsaJI | CCNNGG | 2 cut(s) | 410, 1069 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 536, 1742, 2557 |
| Bse118I | RCCGGY | 2 cut(s) | 1859, 2580 |
| Bse1I | ACTGG | 3 cut(s) | 530, 1973, 2159 |
| Bse3DI | GCAATG | 3 cut(s) | 919, 1425, 2113 |
| BseBI | CCWGG | 1 cut(s) | 823 |
| BseDI | CCNNGG | 2 cut(s) | 410, 1069 |
| BseGI | GGATG | 8 cut(s) | 61, 214, 604, 934, 1335, 1453, 1534, 2456 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 536, 1742, 2557 |
| BseMI | GCAATG | 3 cut(s) | 919, 1425, 2113 |
| BseMII | CTCAG | 1 cut(s) | 1179 |
| BseNI | ACTGG | 3 cut(s) | 530, 1973, 2159 |
| BseRI | GAGGAG | 6 cut(s) | 242, 1130, 1364, 1385, 1855, 2589 |
| BseSI | GKGCMC | 1 cut(s) | 1044 |
| BseXI | GCAGC | 5 cut(s) | 115, 148, 754, 2548, 2619 |
| BseYI | CCCAGC | 1 cut(s) | 1150 |
| BsgI | GTGCAG | 1 cut(s) | 1973 |
| BshFI | GGCC | 6 cut(s) | 125, 1318, 1634, 1863, 1972, 2580 |
| BshNI | GGYRCC | 1 cut(s) | 1298 |
| BsiHKAI | GWGCWC | 2 cut(s) | 322, 2599 |
| BsiSI | CCGG | 4 cut(s) | 410, 1295, 1860, 2581 |
| BslFI | GGGAC | 1 cut(s) | 332 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 536, 1742, 2557 |
| BsmAI | GTCTC | 2 cut(s) | 345, 946 |
| BsmBI | CGTCTC | 1 cut(s) | 345 |
| BsmFI | GGGAC | 1 cut(s) | 332 |
| BsnI | GGCC | 6 cut(s) | 125, 1318, 1634, 1863, 1972, 2580 |
| Bsp1286I | GDGCHC | 3 cut(s) | 322, 1044, 2599 |
| BspACI | CCGC | 4 cut(s) | 432, 770, 1044, 1823 |
| BspANI | GGCC | 6 cut(s) | 125, 1318, 1634, 1863, 1972, 2580 |
| BspCNI | CTCAG | 1 cut(s) | 1180 |
| BspHI | TCATGA | 4 cut(s) | 1707, 1881, 2371, 2395 |
| BspLI | GGNNCC | 2 cut(s) | 1300, 2064 |
| BspMI | ACCTGC | 1 cut(s) | 1987 |
| BspPI | GGATC | 1 cut(s) | 2150 |
| BspQI | GCTCTTC | 1 cut(s) | 265 |
| BspT107I | GGYRCC | 1 cut(s) | 1298 |
| BspTI | CTTAAG | 1 cut(s) | 1580 |
| BsrDI | GCAATG | 3 cut(s) | 919, 1425, 2113 |
| BsrFI | RCCGGY | 2 cut(s) | 1859, 2580 |
| BsrI | ACTGG | 3 cut(s) | 530, 1973, 2159 |
| BssAI | RCCGGY | 2 cut(s) | 1859, 2580 |
| BssECI | CCNNGG | 2 cut(s) | 410, 1069 |
| BssSI | CACGAG | 1 cut(s) | 1991 |
| BssT1I | CCWWGG | 1 cut(s) | 1069 |
| Bst2BI | CACGAG | 1 cut(s) | 1991 |
| Bst2UI | CCWGG | 1 cut(s) | 823 |
| Bst4CI | ACNGT | 6 cut(s) | 77, 295, 850, 1498, 2472, 2510 |
| Bst6I | CTCTTC | 3 cut(s) | 265, 1150, 1230 |
| BstAFI | CTTAAG | 1 cut(s) | 1580 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1424 |
| BstDEI | CTNAG | 4 cut(s) | 21, 855, 1188, 2214 |
| BstF5I | GGATG | 8 cut(s) | 61, 214, 604, 934, 1335, 1453, 1534, 2456 |
| BstH2I | RGCGCY | 1 cut(s) | 888 |
| BstHHI | GCGC | 1 cut(s) | 887 |
| BstMAI | GTCTC | 2 cut(s) | 345, 946 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 264, 823, 1424, 1429, 1681, 2120, 2453 |
| BstNI | CCWGG | 1 cut(s) | 823 |
| BstNSI | RCATGY | 3 cut(s) | 696, 943, 2447 |
| BstSCI | CCNGG | 3 cut(s) | 409, 821, 1294 |
| BstSFI | CTRYAG | 4 cut(s) | 1245, 1783, 2151, 2299 |
| BstSLI | GKGCMC | 1 cut(s) | 1044 |
| BstV1I | GCAGC | 5 cut(s) | 115, 148, 754, 2548, 2619 |
| BstV2I | GAAGAC | 6 cut(s) | 93, 384, 412, 1366, 1634, 2257 |
| BstX2I | RGATCY | 2 cut(s) | 568, 2155 |
| BstYI | RGATCY | 2 cut(s) | 568, 2155 |
| BsuRI | GGCC | 6 cut(s) | 125, 1318, 1634, 1863, 1972, 2580 |
| BtsCI | GGATG | 8 cut(s) | 61, 214, 604, 934, 1335, 1453, 1534, 2456 |
| BtsI | GCAGTG | 1 cut(s) | 844 |
| BtsIMutI | CAGTG | 2 cut(s) | 844, 2483 |
| BveI | ACCTGC | 1 cut(s) | 1987 |
| CciI | TCATGA | 4 cut(s) | 1707, 1881, 2371, 2395 |
| CfoI | GCGC | 1 cut(s) | 887 |
| Cfr10I | RCCGGY | 2 cut(s) | 1859, 2580 |
| Cfr13I | GGNCC | 3 cut(s) | 605, 1058, 2578 |
| CseI | GACGC | 3 cut(s) | 95, 327, 1456 |
| DdeI | CTNAG | 4 cut(s) | 21, 855, 1188, 2214 |
| DraI | TTTAAA | 1 cut(s) | 1639 |
| DraIII | CACNNNGTG | 1 cut(s) | 649 |
| Eam1104I | CTCTTC | 3 cut(s) | 265, 1150, 1230 |
| EarI | CTCTTC | 3 cut(s) | 265, 1150, 1230 |
| Ecl136II | GAGCTC | 1 cut(s) | 2597 |
| Eco130I | CCWWGG | 1 cut(s) | 1069 |
| Eco147I | AGGCCT | 1 cut(s) | 1318 |
| Eco24I | GRGCYC | 1 cut(s) | 2599 |
| Eco32I | GATATC | 1 cut(s) | 756 |
| Eco47I | GGWCC | 2 cut(s) | 605, 1058 |
| Eco53kI | GAGCTC | 1 cut(s) | 2597 |
| Eco57I | CTGAAG | 4 cut(s) | 378, 1254, 2103, 2507 |
| EcoICRI | GAGCTC | 1 cut(s) | 2597 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1058 |
| EcoRI | GAATTC | 1 cut(s) | 2546 |
| EcoRII | CCWGG | 1 cut(s) | 821 |
| EcoRV | GATATC | 1 cut(s) | 756 |
| EcoT14I | CCWWGG | 1 cut(s) | 1069 |
| EcoT38I | GRGCYC | 1 cut(s) | 2599 |
| ErhI | CCWWGG | 1 cut(s) | 1069 |
| Esp3I | CGTCTC | 1 cut(s) | 345 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1191, 1223, 1619, 1651, 2415, 2447 |
| FaqI | GGGAC | 1 cut(s) | 332 |
| FauI | CCCGC | 2 cut(s) | 425, 1051 |
| FauNDI | CATATG | 3 cut(s) | 562, 1806, 2308 |
| FbaI | TGATCA | 4 cut(s) | 139, 1540, 1939, 2392 |
| FblI | GTMKAC | 1 cut(s) | 689 |
| Fnu4HI | GCNGC | 6 cut(s) | 104, 162, 768, 771, 2562, 2608 |
| FokI | GGATG | 8 cut(s) | 68, 221, 611, 941, 1342, 1460, 1541, 2443 |
| FriOI | GRGCYC | 1 cut(s) | 2599 |
| Fsp4HI | GCNGC | 6 cut(s) | 104, 162, 768, 771, 2562, 2608 |
| FspBI | CTAG | 7 cut(s) | 9, 81, 264, 354, 1047, 2439, 2519 |
| GlaI | GCGC | 1 cut(s) | 886 |
| GluI | GCNGC | 6 cut(s) | 104, 162, 768, 771, 2562, 2608 |
| GsaI | CCCAGC | 1 cut(s) | 1154 |
| GsuI | CTGGAG | 1 cut(s) | 513 |
| HaeII | RGCGCY | 1 cut(s) | 888 |
| HaeIII | GGCC | 6 cut(s) | 125, 1318, 1634, 1863, 1972, 2580 |
| HapII | CCGG | 4 cut(s) | 410, 1295, 1860, 2581 |
| HgaI | GACGC | 3 cut(s) | 95, 327, 1456 |
| HhaI | GCGC | 1 cut(s) | 887 |
| Hin6I | GCGC | 1 cut(s) | 885 |
| HinP1I | GCGC | 1 cut(s) | 885 |
| HindIII | AAGCTT | 3 cut(s) | 2276, 2337, 2429 |
| HpaII | CCGG | 4 cut(s) | 410, 1295, 1860, 2581 |
| HphI | GGTGA | 8 cut(s) | 254, 427, 590, 791, 1628, 1681, 2143, 2467 |
| Hpy166II | GTNNAC | 7 cut(s) | 371, 481, 525, 690, 1571, 1762, 2475 |
| Hpy8I | GTNNAC | 7 cut(s) | 371, 481, 525, 690, 1571, 1762, 2475 |
| Hpy99I | CGWCG | 1 cut(s) | 1472 |
| HpyCH4III | ACNGT | 6 cut(s) | 77, 295, 850, 1498, 2472, 2510 |
| HpyCH4IV | ACGT | 1 cut(s) | 98 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 264, 823, 1424, 1429, 1681, 2120, 2453 |
| HpyF3I | CTNAG | 4 cut(s) | 21, 855, 1188, 2214 |
| HpySE526I | ACGT | 1 cut(s) | 98 |
| HspAI | GCGC | 1 cut(s) | 885 |
| KroI | GCCGGC | 2 cut(s) | 1859, 2580 |
| KroNI | GCCGGC | 2 cut(s) | 1861, 2582 |
| Ksp22I | TGATCA | 4 cut(s) | 139, 1540, 1939, 2392 |
| LguI | GCTCTTC | 1 cut(s) | 265 |
| LmnI | GCTCC | 7 cut(s) | 1342, 1372, 2001, 2068, 2103, 2285, 2602 |
| Lsp1109I | GCAGC | 5 cut(s) | 115, 148, 754, 2548, 2619 |
| LweI | GCATC | 5 cut(s) | 754, 919, 1662, 2197, 2465 |
| MaeI | CTAG | 7 cut(s) | 9, 81, 264, 354, 1047, 2439, 2519 |
| MaeII | ACGT | 1 cut(s) | 98 |
| MaeIII | GTNAC | 3 cut(s) | 844, 1081, 2510 |
| MflI | RGATCY | 2 cut(s) | 568, 2155 |
| MhlI | GDGCHC | 3 cut(s) | 322, 1044, 2599 |
| MlyI | GAGTC | 5 cut(s) | 242, 725, 1342, 1417, 2248 |
| MmeI | TCCRAC | 2 cut(s) | 33, 2081 |
| MroNI | GCCGGC | 2 cut(s) | 1859, 2580 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2546 |
| MslI | CAYNNNNRTG | 4 cut(s) | 1037, 2057, 2205, 2415 |
| MspCI | CTTAAG | 1 cut(s) | 1580 |
| MspI | CCGG | 4 cut(s) | 410, 1295, 1860, 2581 |
| MspR9I | CCNGG | 3 cut(s) | 411, 823, 1296 |
| MvaI | CCWGG | 1 cut(s) | 823 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 264, 823, 1424, 1429, 1681, 2120, 2453 |
| NaeI | GCCGGC | 2 cut(s) | 1861, 2582 |
| NciI | CCSGG | 2 cut(s) | 411, 1296 |
| NdeI | CATATG | 3 cut(s) | 562, 1806, 2308 |
| NgoMIV | GCCGGC | 2 cut(s) | 1859, 2580 |
| NlaIV | GGNNCC | 2 cut(s) | 1300, 2064 |
| NmuCI | GTSAC | 2 cut(s) | 1081, 2510 |
| NspI | RCATGY | 3 cut(s) | 696, 943, 2447 |
| OliI | CACNNNNGTG | 1 cut(s) | 1037 |
| PaeI | GCATGC | 1 cut(s) | 2447 |
| PagI | TCATGA | 4 cut(s) | 1707, 1881, 2371, 2395 |
| PceI | AGGCCT | 1 cut(s) | 1318 |
| PciI | ACATGT | 2 cut(s) | 692, 939 |
| PciSI | GCTCTTC | 1 cut(s) | 265 |
| PdiI | GCCGGC | 2 cut(s) | 1861, 2582 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2546 |
| PfeI | GAWTC | 5 cut(s) | 557, 790, 1160, 1720, 2034 |
| PflFI | GACNNNGTC | 1 cut(s) | 388 |
| PkrI | GCNGC | 6 cut(s) | 105, 163, 769, 772, 2563, 2609 |
| PleI | GAGTC | 5 cut(s) | 242, 725, 1341, 1416, 2247 |
| PpsI | GAGTC | 5 cut(s) | 242, 725, 1341, 1416, 2247 |
| PpuMI | RGGWCCY | 1 cut(s) | 1058 |
| PscI | ACATGT | 2 cut(s) | 692, 939 |
| Psp124BI | GAGCTC | 1 cut(s) | 2599 |
| Psp5II | RGGWCCY | 1 cut(s) | 1058 |
| Psp6I | CCWGG | 1 cut(s) | 821 |
| PspFI | CCCAGC | 1 cut(s) | 1150 |
| PspGI | CCWGG | 1 cut(s) | 821 |
| PspN4I | GGNNCC | 2 cut(s) | 1300, 2064 |
| PspPI | GGNCC | 3 cut(s) | 605, 1058, 2578 |
| PspPPI | RGGWCCY | 1 cut(s) | 1058 |
| PsuI | RGATCY | 2 cut(s) | 568, 2155 |
| PsyI | GACNNNGTC | 1 cut(s) | 388 |
| RseI | CAYNNNNRTG | 4 cut(s) | 1037, 2057, 2205, 2415 |
| SacI | GAGCTC | 1 cut(s) | 2599 |
| SapI | GCTCTTC | 1 cut(s) | 265 |
| SatI | GCNGC | 6 cut(s) | 104, 162, 768, 771, 2562, 2608 |
| Sau96I | GGNCC | 3 cut(s) | 605, 1058, 2578 |
| ScaI | AGTACT | 2 cut(s) | 79, 1702 |
| SchI | GAGTC | 5 cut(s) | 242, 725, 1342, 1417, 2248 |
| ScrFI | CCNGG | 3 cut(s) | 411, 823, 1296 |
| SduI | GDGCHC | 3 cut(s) | 322, 1044, 2599 |
| SfaNI | GCATC | 5 cut(s) | 754, 919, 1662, 2197, 2465 |
| SfcI | CTRYAG | 4 cut(s) | 1245, 1783, 2151, 2299 |
| SinI | GGWCC | 2 cut(s) | 605, 1058 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 1037, 2057, 2205, 2415 |
| SmlI | CTYRAG | 5 cut(s) | 313, 1405, 1580, 2405, 2421 |
| SmoI | CTYRAG | 5 cut(s) | 313, 1405, 1580, 2405, 2421 |
| SphI | GCATGC | 1 cut(s) | 2447 |
| SseBI | AGGCCT | 1 cut(s) | 1318 |
| SsiI | CCGC | 4 cut(s) | 432, 770, 1044, 1823 |
| SspI | AATATT | 2 cut(s) | 70, 679 |
| SspMI | CTAG | 7 cut(s) | 9, 81, 264, 354, 1047, 2439, 2519 |
| SstI | GAGCTC | 1 cut(s) | 2599 |
| StuI | AGGCCT | 1 cut(s) | 1318 |
| StyD4I | CCNGG | 3 cut(s) | 409, 821, 1294 |
| StyI | CCWWGG | 1 cut(s) | 1069 |
| TaaI | ACNGT | 6 cut(s) | 77, 295, 850, 1498, 2472, 2510 |
| TaiI | ACGT | 1 cut(s) | 101 |
| TaqI | TCGA | 3 cut(s) | 1264, 1396, 1470 |
| TatI | WGTACW | 6 cut(s) | 77, 671, 695, 1140, 1700, 1761 |
| TauI | GCSGC | 1 cut(s) | 773 |
| TfiI | GAWTC | 5 cut(s) | 557, 790, 1160, 1720, 2034 |
| TscAI | CASTG | 2 cut(s) | 844, 2490 |
| TseFI | GTSAC | 2 cut(s) | 1081, 2510 |
| TseI | GCWGC | 5 cut(s) | 103, 161, 767, 2561, 2607 |
| Tsp45I | GTSAC | 2 cut(s) | 1081, 2510 |
| TspRI | CASTG | 2 cut(s) | 844, 2490 |
| Tth111I | GACNNNGTC | 1 cut(s) | 388 |
| Vha464I | CTTAAG | 1 cut(s) | 1580 |
| VpaK11BI | GGWCC | 2 cut(s) | 605, 1058 |
| XapI | RAATTY | 5 cut(s) | 1087, 1106, 2093, 2375, 2546 |
| XceI | RCATGY | 3 cut(s) | 696, 943, 2447 |
| XmiI | GTMKAC | 1 cut(s) | 689 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2546 |
| XspI | CTAG | 7 cut(s) | 9, 81, 264, 354, 1047, 2439, 2519 |
| ZrmI | AGTACT | 2 cut(s) | 79, 1702 |