Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000291

Physical Location & Seq

Genomic Coordinates Reverse (-)

18854879 .. 18855448

Gene Structure 570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g15243.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGGAATGACATTGGCAAAAAGGAGGAAAGAGAAGTTTTTGGACTTGCATCATTTGGAAGCTTGTGCTTGTTTATATAGGTTTGTGAAGAGAAAGCGGTGCCTGTCGGGCGTGCCACCTACGGTGGCTAGTGGATGGCTCCGGCAGCCCGTGGTGGTGGTTTTGAGGTTAAGGCGAGCCATTGGTGGCACGCCAAAGGAGGTATTGGACTGGTTGAAAAAAATAGAAATGATCTTTGAGTACTTGGAGATGCTAGAAAATAAGAAGGTTAAGGCAGTAGCTGTCAAATTGAAGGGGTACACTTTTTTCGGGTGGGATCAAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004712 GO:0004713 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009653 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018108 GO:0018193 GO:0018212 GO:0019538 GO:0023052 GO:0030154 GO:0030435 GO:0032502 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Pkinase Pkinase_Tyr

Protein Analysis

109

Amino Acids

12.58

Weight (kDa)

10.02

Isoelectric Point (pI)

58.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00860
fragaria_vesca	FvH4_1g23712 FvH4_1g29809 FvH4_1g29810 FvH4_2g02661 FvH4_2g13451 FvH4_2g17921 FvH4_2g17922 FvH4_2g19251 FvH4_2g19252 FvH4_2g28221 FvH4_2g35961 FvH4_3g10372 FvH4_3g12461 FvH4_3g12461 FvH4_3g27861 FvH4_3g34591 FvH4_3g40201 FvH4_3g44612 FvH4_4g08352 FvH4_4g12251 FvH4_4g12742 FvH4_4g13904 FvH4_4g14287 FvH4_4g15243 FvH4_4g24071 FvH4_4g33448 FvH4_5g21912 FvH4_5g39371 FvH4_6g14992 FvH4_6g15221 FvH4_6g20603 FvH4_6g31093 FvH4_6g32372 FvH4_6g33012
malus_domestica	MD11G1009100.v1.1 MD13G1145000.v1.1 MD16G1138700.v1.1
prunus_persica	Prupe.5G246300_v2.0.a1 Prupe.7G034800_v2.0.a1 Prupe.8G084500_v2.0.a1
pyrus_communis	pycom01g18240 pycom04g00330 pycom05g09010 pycom06g01670 pycom06g01690 pycom06g07180 pycom06g11620 pycom10g05720 pycom1134g00040 pycom1134g00060 pycom12486g00010 pycom12555g00230 pycom13g21670 pycom13g23130 pycom13g23140 pycom14g10580
rosa_chinensis	RchiOBHm_Chr1g0330691 RchiOBHm_Chr2g0106171 RchiOBHm_Chr2g0134731 RchiOBHm_Chr2g0142791 RchiOBHm_Chr2g0149861 RchiOBHm_Chr3g0452401 RchiOBHm_Chr3g0461881 RchiOBHm_Chr4g0401341 RchiOBHm_Chr5g0075641 RchiOBHm_Chr6g0265961 RchiOBHm_Chr7g0200201 RchiOBHm_Chr7g0237811
rosa_laevigata	RLG00000002773
rosa_multiflora	Rmu_co8037806.1_g000001 Rmu_co8445989.1_g000001 Rmu_sc0000745.1_g000039 Rmu_sc0004448.1_g000029 Rmu_sc0004488.1_g000002 Rmu_sc0004591.1_g000018 Rmu_sc0005065.1_g000030 Rmu_sc0005150.1_g000005 Rmu_sc0005654.1_g000011 Rmu_sc0006986.1_g000016
rosa_roxburghii	Rroxscaffold_164G00436490 Rroxscaffold_175G00432490 Rroxscaffold_1G00059440 Rroxscaffold_1G00064410 Rroxscaffold_2G00100310 Rroxscaffold_2G00128170 Rroxscaffold_3G00239420 Rroxscaffold_3G00264970 Rroxscaffold_3G00271550 Rroxscaffold_4G00300240 Rroxscaffold_5G00385050 Rroxscaffold_6G00399720
rosa_rugosa	Rorug02G0252200
rosa_samantha	Rh2DG251900 Rh7CG329900
rosa_wichuraiana	Rw0G004800 Rw1G000850 Rw1G022350 Rw2G027030 Rw2G027760 Rw2G028410 Rw2G029130 Rw2G029390 Rw2G032490 Rw2G039460 Rw2G047800 Rw2G050340 Rw3G026430 Rw4G018370 Rw4G030750 Rw4G033140 Rw5G011950 Rw5G012010 Rw5G029280 Rw5G040190 Rw5G044570 Rw5G048240 Rw6G000340 Rw6G010140 Rw6G026480 Rw7G033750 Rw7G037250 Rw7G042080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	99
AciI	CCGC	1 cut(s)	97
AclWI	GGATC	1 cut(s)	324
AfaI	GTAC	2 cut(s)	242, 299
AgsI	TTSAA	2 cut(s)	217, 292
AluBI	AGCT	2 cut(s)	62, 281
AluI	AGCT	2 cut(s)	62, 281
AlwI	GGATC	1 cut(s)	324
AlwNI	CAGNNNCTG	1 cut(s)	281
ApeKI	GCWGC	1 cut(s)	145
BanI	GGYRCC	1 cut(s)	99
BbvI	GCAGC	1 cut(s)	157
BccI	CCATC	1 cut(s)	129
BfaI	CTAG	2 cut(s)	129, 254
BglI	GCCNNNNNGGC	1 cut(s)	108
BisI	GCNGC	1 cut(s)	146
BlsI	GCNGC	1 cut(s)	147
BmcAI	AGTACT	1 cut(s)	242
BmiI	GGNNCC	2 cut(s)	101, 140
BmsI	GCATC	2 cut(s)	58, 240
BsaJI	CCNNGG	1 cut(s)	150
Bse1I	ACTGG	1 cut(s)	215
BseDI	CCNNGG	1 cut(s)	150
BseGI	GGATG	1 cut(s)	140
BseNI	ACTGG	1 cut(s)	215
BseXI	GCAGC	1 cut(s)	157
BshNI	GGYRCC	1 cut(s)	99
BsiSI	CCGG	1 cut(s)	142
Bsp143I	GATC	2 cut(s)	231, 316
BspACI	CCGC	1 cut(s)	97
BspLI	GGNNCC	2 cut(s)	101, 140
BspPI	GGATC	1 cut(s)	324
BspT107I	GGYRCC	1 cut(s)	99
BsrI	ACTGG	1 cut(s)	215
BssECI	CCNNGG	1 cut(s)	150
BssMI	GATC	2 cut(s)	231, 316
Bst4CI	ACNGT	1 cut(s)	124
Bst6I	CTCTTC	1 cut(s)	83
BstC8I	GCNNGC	3 cut(s)	113, 177, 191
BstDSI	CCRYGG	1 cut(s)	150
BstF5I	GGATG	1 cut(s)	140
BstKTI	GATC	2 cut(s)	234, 319
BstMBI	GATC	2 cut(s)	231, 316
BstMWI	GCNNNNNNNGC	2 cut(s)	108, 145
BstV1I	GCAGC	1 cut(s)	157
BtgI	CCRYGG	1 cut(s)	150
BtsCI	GGATG	1 cut(s)	140
Cac8I	GCNNGC	3 cut(s)	113, 177, 191
CaiI	CAGNNNCTG	1 cut(s)	281
Csp6I	GTAC	2 cut(s)	241, 298
CviJI	RGCY	6 cut(s)	62, 128, 139, 148, 179, 281
CviKI_1	RGCY	6 cut(s)	62, 128, 139, 148, 179, 281
CviQI	GTAC	2 cut(s)	241, 298
DpnI	GATC	2 cut(s)	233, 318
DpnII	GATC	2 cut(s)	231, 316
Eam1104I	CTCTTC	1 cut(s)	83
EarI	CTCTTC	1 cut(s)	83
FaiI	YATR	2 cut(s)	76, 78
Fnu4HI	GCNGC	1 cut(s)	146
FokI	GGATG	1 cut(s)	147
Fsp4HI	GCNGC	1 cut(s)	146
FspBI	CTAG	2 cut(s)	129, 254
GluI	GCNGC	1 cut(s)	146
HapII	CCGG	1 cut(s)	142
HindIII	AAGCTT	1 cut(s)	60
HpaII	CCGG	1 cut(s)	142
Hpy166II	GTNNAC	1 cut(s)	300
Hpy8I	GTNNAC	1 cut(s)	300
HpyAV	CCTTC	2 cut(s)	259, 286
HpyCH4III	ACNGT	1 cut(s)	124
HpyCH4V	TGCA	1 cut(s)	49
HpyF10VI	GCNNNNNNNGC	2 cut(s)	108, 145
Kzo9I	GATC	2 cut(s)	231, 316
LmnI	GCTCC	1 cut(s)	144
LpnPI	CCDG	3 cut(s)	116, 155, 196
Lsp1109I	GCAGC	1 cut(s)	157
LweI	GCATC	2 cut(s)	58, 240
MaeI	CTAG	2 cut(s)	129, 254
MalI	GATC	2 cut(s)	233, 318
MboI	GATC	2 cut(s)	231, 316
MboII	GAAGA	1 cut(s)	100
MluCI	AATT	1 cut(s)	287
MnlI	CCTC	3 cut(s)	18, 159, 193
MseI	TTAA	2 cut(s)	170, 270
MspI	CCGG	1 cut(s)	142
MwoI	GCNNNNNNNGC	2 cut(s)	108, 145
NdeII	GATC	2 cut(s)	231, 316
NlaIV	GGNNCC	2 cut(s)	101, 140
PkrI	GCNGC	1 cut(s)	147
PspN4I	GGNNCC	2 cut(s)	101, 140
PstNI	CAGNNNCTG	1 cut(s)	281
RsaI	GTAC	2 cut(s)	242, 299
RsaNI	GTAC	2 cut(s)	241, 298
SaqAI	TTAA	2 cut(s)	170, 270
SatI	GCNGC	1 cut(s)	146
Sau3AI	GATC	2 cut(s)	231, 316
ScaI	AGTACT	1 cut(s)	242
SetI	ASST	7 cut(s)	64, 83, 121, 170, 204, 270, 283
SfaNI	GCATC	2 cut(s)	58, 240
Sse9I	AATT	1 cut(s)	287
SsiI	CCGC	1 cut(s)	97
SspMI	CTAG	2 cut(s)	129, 254
TaaI	ACNGT	1 cut(s)	124
TasI	AATT	1 cut(s)	287
TatI	WGTACW	1 cut(s)	240
Tru1I	TTAA	2 cut(s)	170, 270
Tru9I	TTAA	2 cut(s)	170, 270
TseI	GCWGC	1 cut(s)	145
XspI	CTAG	2 cut(s)	129, 254
ZrmI	AGTACT	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.