Rmu_sc0004591.1_g000018
ERF Family

DNA RNA polymerases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004591.1
OG0000291
Physical Location & Seq
Forward (+)
75914 .. 76768
855 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004591.1_g000018.1.cds

Sequence Viewer

Length: 498 bp
atggatgattatgatgaatatgatggagaagttggaagaggtgatgaatatgaaggggttgaatttgaggtggaggagtctcctaagaaggttaatattgtgttgcagaggatcttattatctcctaaggaagatggtcataaaattgccattgctcctgtttatcaatttgagagatctggtgtaaggaaaggggagagttttctgaccttgtctagcagtgaattcgagatggaggaagactttaaagaatctgaagttatttgtccagtggtgattaaagggttgttgactacagaaaagacagatatggtgatccctaaggaaatgcagaatatgttgggagagtttaaggagctgatttcaaatgtgctgcctaacgagttaccacctataagggacattcagcatcatattgatctagttcctggagctagtttgccaaatctgccccattaccacatgagtcctaaggagaatgagattttgagggagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 Retrotrans_gag rve zf-H2C2

Protein Analysis

165

Amino Acids

18.87

Weight (kDa)

4.6

Isoelectric Point (pI)

59.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000291)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00860
fragaria_vesca FvH4_1g23712 FvH4_1g29809 FvH4_1g29810 FvH4_2g02661 FvH4_2g13451 FvH4_2g17921 FvH4_2g17922 FvH4_2g19251 FvH4_2g19252 FvH4_2g28221 FvH4_2g35961 FvH4_3g10372 FvH4_3g12461 FvH4_3g12461 FvH4_3g27861 FvH4_3g34591 FvH4_3g40201 FvH4_3g44612 FvH4_4g08352 FvH4_4g12251 FvH4_4g12742 FvH4_4g13904 FvH4_4g14287 FvH4_4g15243 FvH4_4g24071 FvH4_4g33448 FvH4_5g21912 FvH4_5g39371 FvH4_6g14992 FvH4_6g15221 FvH4_6g20603 FvH4_6g31093 FvH4_6g32372 FvH4_6g33012
malus_domestica MD11G1009100.v1.1 MD13G1145000.v1.1 MD16G1138700.v1.1
prunus_persica Prupe.5G246300_v2.0.a1 Prupe.7G034800_v2.0.a1 Prupe.8G084500_v2.0.a1
pyrus_communis pycom01g18240 pycom04g00330 pycom05g09010 pycom06g01670 pycom06g01690 pycom06g07180 pycom06g11620 pycom10g05720 pycom1134g00040 pycom1134g00060 pycom12486g00010 pycom12555g00230 pycom13g21670 pycom13g23130 pycom13g23140 pycom14g10580
rosa_chinensis RchiOBHm_Chr1g0330691 RchiOBHm_Chr2g0106171 RchiOBHm_Chr2g0134731 RchiOBHm_Chr2g0142791 RchiOBHm_Chr2g0149861 RchiOBHm_Chr3g0452401 RchiOBHm_Chr3g0461881 RchiOBHm_Chr4g0401341 RchiOBHm_Chr5g0075641 RchiOBHm_Chr6g0265961 RchiOBHm_Chr7g0200201 RchiOBHm_Chr7g0237811
rosa_laevigata RLG00000002773
rosa_multiflora Rmu_co8037806.1_g000001 Rmu_co8445989.1_g000001 Rmu_sc0000745.1_g000039 Rmu_sc0004448.1_g000029 Rmu_sc0004488.1_g000002 Rmu_sc0004591.1_g000018 Rmu_sc0005065.1_g000030 Rmu_sc0005150.1_g000005 Rmu_sc0005654.1_g000011 Rmu_sc0006986.1_g000016
rosa_roxburghii Rroxscaffold_164G00436490 Rroxscaffold_175G00432490 Rroxscaffold_1G00059440 Rroxscaffold_1G00064410 Rroxscaffold_2G00100310 Rroxscaffold_2G00128170 Rroxscaffold_3G00239420 Rroxscaffold_3G00264970 Rroxscaffold_3G00271550 Rroxscaffold_4G00300240 Rroxscaffold_5G00385050 Rroxscaffold_6G00399720
rosa_rugosa Rorug02G0252200
rosa_samantha Rh2DG251900 Rh7CG329900
rosa_wichuraiana Rw0G004800 Rw1G000850 Rw1G022350 Rw2G027030 Rw2G027760 Rw2G028410 Rw2G029130 Rw2G029390 Rw2G032490 Rw2G039460 Rw2G047800 Rw2G050340 Rw3G026430 Rw4G018370 Rw4G030750 Rw4G033140 Rw5G011950 Rw5G012010 Rw5G029280 Rw5G040190 Rw5G044570 Rw5G048240 Rw6G000340 Rw6G010140 Rw6G026480 Rw7G033750 Rw7G037250 Rw7G042080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 119, 310
AcsI RAATTY 2 cut(s) 62, 224
AcuI CTGAAG 1 cut(s) 276
AgsI TTSAA 2 cut(s) 62, 366
AjnI CCWGG 1 cut(s) 427
AluBI AGCT 2 cut(s) 358, 434
AluI AGCT 2 cut(s) 358, 434
Alw26I GTCTC 1 cut(s) 84
AlwI GGATC 2 cut(s) 119, 310
ApeKI GCWGC 1 cut(s) 373
ApoI RAATTY 2 cut(s) 62, 224
AsuHPI GGTGA 3 cut(s) 53, 286, 325
AxyI CCTNAGG 3 cut(s) 126, 321, 471
BbsI GAAGAC 1 cut(s) 246
BbvI GCAGC 1 cut(s) 360
BccI CCATC 3 cut(s) 17, 128, 226
BcgI CGANNNNNNTGC 2 cut(s) 208, 242
BciT130I CCWGG 1 cut(s) 429
BcoDI GTCTC 1 cut(s) 84
BfaI CTAG 3 cut(s) 216, 422, 435
BfmI CTRYAG 1 cut(s) 294
BglII AGATCT 1 cut(s) 176
BisI GCNGC 1 cut(s) 374
BlsI GCNGC 1 cut(s) 375
Bme1390I CCNGG 1 cut(s) 429
BmrFI CCNGG 1 cut(s) 429
BmsI GCATC 1 cut(s) 418
BpiI GAAGAC 1 cut(s) 246
BpmI CTGGAG 1 cut(s) 450
Bse1I ACTGG 1 cut(s) 269
Bse21I CCTNAGG 3 cut(s) 126, 321, 471
Bse3DI GCAATG 1 cut(s) 150
BseBI CCWGG 1 cut(s) 429
BseGI GGATG 1 cut(s) 10
BseMI GCAATG 1 cut(s) 150
BseNI ACTGG 1 cut(s) 269
BseRI GAGGAG 1 cut(s) 89
BseXI GCAGC 1 cut(s) 360
BslFI GGGAC 1 cut(s) 413
BsmAI GTCTC 1 cut(s) 84
BsmFI GGGAC 1 cut(s) 413
Bsp143I GATC 4 cut(s) 111, 176, 315, 418
BspPI GGATC 2 cut(s) 119, 310
BsrDI GCAATG 1 cut(s) 150
BsrI ACTGG 1 cut(s) 269
BssMI GATC 4 cut(s) 111, 176, 315, 418
Bst2UI CCWGG 1 cut(s) 429
Bst6I CTCTTC 1 cut(s) 31
BstDEI CTNAG 4 cut(s) 84, 126, 321, 471
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 4 cut(s) 114, 179, 318, 421
BstMAI GTCTC 1 cut(s) 84
BstMBI GATC 4 cut(s) 111, 176, 315, 418
BstMWI GCNNNNNNNGC 1 cut(s) 448
BstNI CCWGG 1 cut(s) 429
BstSCI CCNGG 1 cut(s) 427
BstSFI CTRYAG 1 cut(s) 294
BstV1I GCAGC 1 cut(s) 360
BstV2I GAAGAC 1 cut(s) 246
BstX2I RGATCY 2 cut(s) 111, 176
BstYI RGATCY 2 cut(s) 111, 176
Bsu36I CCTNAGG 3 cut(s) 126, 321, 471
BtsCI GGATG 1 cut(s) 10
BtsI GCAGTG 1 cut(s) 226
BtsIMutI CAGTG 2 cut(s) 226, 276
CviAII CATG 1 cut(s) 463
CviJI RGCY 2 cut(s) 358, 434
CviKI_1 RGCY 2 cut(s) 358, 434
DdeI CTNAG 4 cut(s) 84, 126, 321, 471
DpnI GATC 4 cut(s) 113, 178, 317, 420
DpnII GATC 4 cut(s) 111, 176, 315, 418
DraI TTTAAA 1 cut(s) 247
Eam1104I CTCTTC 1 cut(s) 31
EarI CTCTTC 1 cut(s) 31
Eco57I CTGAAG 1 cut(s) 276
Eco81I CCTNAGG 3 cut(s) 126, 321, 471
EcoRI GAATTC 1 cut(s) 224
EcoRII CCWGG 1 cut(s) 427
FaeI CATG 1 cut(s) 466
FaiI YATR 9 cut(s) 12, 21, 51, 141, 311, 338, 395, 414, 464
FaqI GGGAC 1 cut(s) 413
FatI CATG 1 cut(s) 462
Fnu4HI GCNGC 1 cut(s) 374
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 374
FspBI CTAG 3 cut(s) 216, 422, 435
GluI GCNGC 1 cut(s) 374
GsuI CTGGAG 1 cut(s) 450
Hin1II CATG 1 cut(s) 466
HincII GTYRAC 1 cut(s) 291
HindII GTYRAC 1 cut(s) 291
HinfI GANTC 3 cut(s) 77, 251, 466
HphI GGTGA 3 cut(s) 53, 286, 325
Hpy166II GTNNAC 1 cut(s) 291
Hpy188I TCNGA 2 cut(s) 207, 256
Hpy188III TCNNGA 1 cut(s) 229
Hpy8I GTNNAC 1 cut(s) 291
HpyAV CCTTC 2 cut(s) 47, 82
HpyCH4V TGCA 2 cut(s) 106, 331
HpyF10VI GCNNNNNNNGC 1 cut(s) 448
HpyF3I CTNAG 4 cut(s) 84, 126, 321, 471
Hsp92II CATG 1 cut(s) 466
Kzo9I GATC 4 cut(s) 111, 176, 315, 418
LmnI GCTCC 3 cut(s) 160, 355, 431
LpnPI CCDG 5 cut(s) 165, 171, 282, 414, 441
Lsp1109I GCAGC 1 cut(s) 360
LweI GCATC 1 cut(s) 418
MaeI CTAG 3 cut(s) 216, 422, 435
MaeIII GTNAC 1 cut(s) 384
MalI GATC 4 cut(s) 113, 178, 317, 420
MboI GATC 4 cut(s) 111, 176, 315, 418
MboII GAAGA 3 cut(s) 48, 143, 251
MflI RGATCY 2 cut(s) 111, 176
MluCI AATT 4 cut(s) 62, 144, 167, 224
MlyI GAGTC 2 cut(s) 86, 475
MmeI TCCRAC 1 cut(s) 13
MnlI CCTC 6 cut(s) 32, 61, 67, 102, 229, 483
MseI TTAA 4 cut(s) 93, 246, 279, 351
MspR9I CCNGG 1 cut(s) 429
MvaI CCWGG 1 cut(s) 429
MwoI GCNNNNNNNGC 1 cut(s) 448
NdeII GATC 4 cut(s) 111, 176, 315, 418
NlaIII CATG 1 cut(s) 466
PfeI GAWTC 1 cut(s) 251
PflFI GACNNNGTC 1 cut(s) 211
PfoI TCCNGGA 1 cut(s) 427
PkrI GCNGC 1 cut(s) 375
PleI GAGTC 2 cut(s) 85, 474
PpsI GAGTC 2 cut(s) 85, 474
Psp6I CCWGG 1 cut(s) 427
PspGI CCWGG 1 cut(s) 427
PsuI RGATCY 2 cut(s) 111, 176
PsyI GACNNNGTC 1 cut(s) 211
SaqAI TTAA 4 cut(s) 93, 246, 279, 351
SatI GCNGC 1 cut(s) 374
Sau3AI GATC 4 cut(s) 111, 176, 315, 418
SchI GAGTC 2 cut(s) 86, 475
ScrFI CCNGG 1 cut(s) 429
SetI ASST 7 cut(s) 43, 72, 93, 212, 360, 394, 436
SfaNI GCATC 1 cut(s) 418
SfcI CTRYAG 1 cut(s) 294
Sse9I AATT 4 cut(s) 62, 144, 167, 224
SspI AATATT 1 cut(s) 97
SspMI CTAG 3 cut(s) 216, 422, 435
StyD4I CCNGG 1 cut(s) 427
TaqI TCGA 1 cut(s) 228
TasI AATT 4 cut(s) 62, 144, 167, 224
TfiI GAWTC 1 cut(s) 251
Tru1I TTAA 4 cut(s) 93, 246, 279, 351
Tru9I TTAA 4 cut(s) 93, 246, 279, 351
TscAI CASTG 2 cut(s) 226, 276
TseI GCWGC 1 cut(s) 373
TspDTI ATGAA 3 cut(s) 30, 60, 66
TspRI CASTG 2 cut(s) 226, 276
Tth111I GACNNNGTC 1 cut(s) 211
XapI RAATTY 2 cut(s) 62, 224
XspI CTAG 3 cut(s) 216, 422, 435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.