RchiOBHm_Chr2g0149861

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000291
Physical Location & Seq
Forward (+)
67692491 .. 67694371
1881 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51925

Sequence Viewer

Length: 1464 bp
ATGCCGTTCGGGTTGACCAATGCGCCAGCCACATTCTGCACTTTGATGAACCAAGTCTTCCACGAGTACTTAGATAAGTTCGTGGTAGTGTACCTGGATGACATAGTGGTGTACAGCTCTACCCTAGAAGAACACGTAGAGCACTTGAAGTTGGTGTTCCAACGATTGCGGGACAACCAGTTGTATGTCAAGCGCGAAAAGTGCTCCTTCGCGCAAGTGACCATCAAGTTTTTAGGTCACATTATTGAAAGGGGTCAAATCAGGATGGATATGGAGAAAGTGGAAGCCATAAAGGAGTGGAGAAACCCCAAGAATGTGAAAGAGCTACGTTCTTTTCTTGGGCTGGCCAATTACTACAGACGTTTCATTGAGAATTACTCAAAGAAGACGACCCCCTTAACTGAACTCTTGAAGAAAGGGGTGACATGGGACTGGAGTAGTAATTGTGAGAAGGCCTTTCAAGATTTGAAGAAGGCCGTGATGGAAGATCCGGTCCTTGCCTTACCCGACCTGAACCAGCCATTTGAAGTCCAGACAGATGCTTCTGACTTCGCCTTAGGAGGAGTCCTGCTGCAACAAGGGCACCCTGTTGCGTATGAAAGTCATAAACTCTCGGAAGCTGAGAGGAGGTACGCGGCTCAGGAGAAGGAGTTGCTAGCCGTAATTCACTGTTTGAGGACGTGGCGACACTATTTGCTGGGGTCAAAGTTCCTTGTGAAGACAGACAATTCAGCCGTCAGCCACTTCCTGACCCAGCCGAAGTTAACTCCAAAGCAAGCTCGATGGCAAGAGTTTCTCGCTGAGTTCGACTTCAATTTCGAACACAAGGCTGGGCACACAAACCAAGTTGCTGATGCTCTAAGTCGCAAGGCTGATCTTGCCACCCTCAAGGTGTTGGCCACTTTGTCGAGCAGCATCATTGCCACAGACATCAAGCAACGTATCAAGGAGAGTCTGGAGAAGGATTCCGTGGCGCAATCCCTCATGAAAATGGTGAAGGAAGGGAAGAGCCGTCGGTTTTGGATGGAGGATGGCATATTGATGGCCAAAGGAGGACGAGTGTTTGTTCCGCGAGCTGACGGACTGCGAAGAATGCTTATGAGGGAGTGTCACGACACCCTGTGGGCAGGTCACCCTGGATGGCAGAGGACCCATGCACTCCTCAAGCAGGGATACTATTGGCCCCAGATGCGAGACGATGTCACGGAATACACCAAGACTTGCCTGACATGCCAGCAAGACAAGATTGAGCGCCAAAAGACTCCAGGGCTGTTGGAACCGCTGTCTATTCCTACTCGCCCGTGGGAGAGTGTCTCCCTTGACTTTATTACTAACCTCCCGAAGGTGGGAGACTTATCAGGCATCCTGGTTGTGGTTGACAGGTTTTCAAACAAGCCTCTTCTTCAAGCATGTTGTAAAGTATTGGGGTGTGCCTCAGAACATAGTCAGCGATCGAGACACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease_2 Chromo RVT_1 Retrotrans_gag gag-asp_proteas rve

Protein Analysis

487

Amino Acids

56.15

Weight (kDa)

8.95

Isoelectric Point (pI)

42.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_1 PF00078 1 - 82 3.2e-22 Reverse transcriptase (RNA-dependent DNA polymerase)
RT_RNaseH_2 PF17919 145 - 239 1e-34 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 170 - 269 1.3e-33 RNase H-like domain found in reverse transcriptase
Integrase_H2C2 PF17921 361 - 415 1e-21 Integrase zinc binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000291)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00860
fragaria_vesca FvH4_1g23712 FvH4_1g29809 FvH4_1g29810 FvH4_2g02661 FvH4_2g13451 FvH4_2g17921 FvH4_2g17922 FvH4_2g19251 FvH4_2g19252 FvH4_2g28221 FvH4_2g35961 FvH4_3g10372 FvH4_3g12461 FvH4_3g12461 FvH4_3g27861 FvH4_3g34591 FvH4_3g40201 FvH4_3g44612 FvH4_4g08352 FvH4_4g12251 FvH4_4g12742 FvH4_4g13904 FvH4_4g14287 FvH4_4g15243 FvH4_4g24071 FvH4_4g33448 FvH4_5g21912 FvH4_5g39371 FvH4_6g14992 FvH4_6g15221 FvH4_6g20603 FvH4_6g31093 FvH4_6g32372 FvH4_6g33012
malus_domestica MD11G1009100.v1.1 MD13G1145000.v1.1 MD16G1138700.v1.1
prunus_persica Prupe.5G246300_v2.0.a1 Prupe.7G034800_v2.0.a1 Prupe.8G084500_v2.0.a1
pyrus_communis pycom01g18240 pycom04g00330 pycom05g09010 pycom06g01670 pycom06g01690 pycom06g07180 pycom06g11620 pycom10g05720 pycom1134g00040 pycom1134g00060 pycom12486g00010 pycom12555g00230 pycom13g21670 pycom13g23130 pycom13g23140 pycom14g10580
rosa_chinensis RchiOBHm_Chr1g0330691 RchiOBHm_Chr2g0106171 RchiOBHm_Chr2g0134731 RchiOBHm_Chr2g0142791 RchiOBHm_Chr2g0149861 RchiOBHm_Chr3g0452401 RchiOBHm_Chr3g0461881 RchiOBHm_Chr4g0401341 RchiOBHm_Chr5g0075641 RchiOBHm_Chr6g0265961 RchiOBHm_Chr7g0200201 RchiOBHm_Chr7g0237811
rosa_laevigata RLG00000002773
rosa_multiflora Rmu_co8037806.1_g000001 Rmu_co8445989.1_g000001 Rmu_sc0000745.1_g000039 Rmu_sc0004448.1_g000029 Rmu_sc0004488.1_g000002 Rmu_sc0004591.1_g000018 Rmu_sc0005065.1_g000030 Rmu_sc0005150.1_g000005 Rmu_sc0005654.1_g000011 Rmu_sc0006986.1_g000016
rosa_roxburghii Rroxscaffold_164G00436490 Rroxscaffold_175G00432490 Rroxscaffold_1G00059440 Rroxscaffold_1G00064410 Rroxscaffold_2G00100310 Rroxscaffold_2G00128170 Rroxscaffold_3G00239420 Rroxscaffold_3G00264970 Rroxscaffold_3G00271550 Rroxscaffold_4G00300240 Rroxscaffold_5G00385050 Rroxscaffold_6G00399720
rosa_rugosa Rorug02G0252200
rosa_samantha Rh2DG251900 Rh7CG329900
rosa_wichuraiana Rw0G004800 Rw1G000850 Rw1G022350 Rw2G027030 Rw2G027760 Rw2G028410 Rw2G029130 Rw2G029390 Rw2G032490 Rw2G039460 Rw2G047800 Rw2G050340 Rw3G026430 Rw4G018370 Rw4G030750 Rw4G033140 Rw5G011950 Rw5G012010 Rw5G029280 Rw5G040190 Rw5G044570 Rw5G048240 Rw6G000340 Rw6G010140 Rw6G026480 Rw7G033750 Rw7G037250 Rw7G042080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1118
AccB1I GGYRCC 1 cut(s) 582
AccII CGCG 4 cut(s) 195, 212, 635, 1072
AciI CCGC 4 cut(s) 169, 635, 1070, 1280
AclWI GGATC 1 cut(s) 482
AcoI YGGCCR 3 cut(s) 345, 897, 1044
AdeI CACNNNGTG 1 cut(s) 1122
AfaI GTAC 4 cut(s) 68, 92, 113, 632
AfiI CCNNNNNNNGG 5 cut(s) 1168, 1342, 1345, 1346, 1372
AflIII ACRYGT 1 cut(s) 133
AgsI TTSAA 9 cut(s) 148, 248, 412, 461, 469, 527, 814, 1389, 1406
AjiI CACGTC 1 cut(s) 681
AjnI CCWGG 4 cut(s) 93, 1135, 1264, 1365
AluBI AGCT 5 cut(s) 117, 325, 620, 779, 1076
AluI AGCT 5 cut(s) 117, 325, 620, 779, 1076
Alw21I GWGCWC 2 cut(s) 144, 206
Alw26I GTCTC 4 cut(s) 1188, 1318, 1344, 1450
AlwI GGATC 1 cut(s) 482
AoxI GGCC 6 cut(s) 345, 453, 474, 897, 1044, 1181
ApeKI GCWGC 2 cut(s) 571, 912
ArsI GACNNNNNNTTYG 2 cut(s) 800, 832
AspLEI GCGC 5 cut(s) 25, 195, 214, 976, 1254
AspS9I GGNCC 3 cut(s) 493, 1149, 1182
AsuHPI GGTGA 3 cut(s) 433, 1006, 1124
AsuII TTCGAA 1 cut(s) 819
AsuNHI GCTAGC 1 cut(s) 655
AvaII GGWCC 2 cut(s) 493, 1149
AxyI CCTNAGG 1 cut(s) 556
BaeGI GKGCMC 2 cut(s) 585, 837
BalI TGGCCA 3 cut(s) 347, 899, 1046
BanI GGYRCC 1 cut(s) 582
BauI CACGAG 1 cut(s) 62
BbsI GAAGAC 3 cut(s) 49, 392, 725
Bbv12I GWGCWC 2 cut(s) 144, 206
BbvI GCAGC 2 cut(s) 558, 924
BccI CCATC 8 cut(s) 230, 259, 475, 777, 1018, 1025, 1036, 1134
BceAI ACGGC 4 cut(s) 461, 644, 719, 996
BciT130I CCWGG 4 cut(s) 95, 1137, 1266, 1367
BciVI GTATCC 1 cut(s) 1166
BcoDI GTCTC 4 cut(s) 1188, 1318, 1344, 1450
BfaI CTAG 3 cut(s) 125, 656, 1462
BfmI CTRYAG 1 cut(s) 355
BfoI RGCGCY 1 cut(s) 1255
BfuAI ACCTGC 1 cut(s) 1118
BfuI GTATCC 1 cut(s) 1166
BisI GCNGC 3 cut(s) 572, 636, 913
BlsI GCNGC 3 cut(s) 573, 637, 914
BmcAI AGTACT 1 cut(s) 68
Bme1390I CCNGG 4 cut(s) 95, 1137, 1266, 1367
Bme18I GGWCC 2 cut(s) 493, 1149
BmgBI CACGTC 1 cut(s) 681
BmgT120I GGNCC 3 cut(s) 493, 1149, 1182
BmiI GGNNCC 4 cut(s) 584, 1151, 1184, 1278
BmrFI CCNGG 4 cut(s) 95, 1137, 1266, 1367
BmsI GCATC 5 cut(s) 529, 844, 924, 1179, 1371
BmtI GCTAGC 1 cut(s) 659
BpiI GAAGAC 3 cut(s) 49, 392, 725
BplI GAGNNNNNCTC 4 cut(s) 362, 394, 1298, 1330
BpmI CTGGAG 3 cut(s) 454, 977, 1248
Bpu10I CCTNAGC 1 cut(s) 639
Bpu14I TTCGAA 1 cut(s) 819
BpuEI CTTGAG 2 cut(s) 872, 1148
BsaAI YACGTR 1 cut(s) 136
BsaJI CCNNGG 4 cut(s) 969, 1135, 1265, 1301
BsaWI WCCGGW 1 cut(s) 490
BsaXI ACNNNNNCTCC 4 cut(s) 635, 665, 1044, 1074
Bsc4I CCNNNNNNNGG 5 cut(s) 1168, 1342, 1345, 1346, 1372
Bse1I ACTGG 2 cut(s) 178, 437
Bse21I CCTNAGG 1 cut(s) 556
Bse3DI GCAATG 1 cut(s) 918
BseBI CCWGG 4 cut(s) 95, 1137, 1266, 1367
BseDI CCNNGG 4 cut(s) 969, 1135, 1265, 1301
BseGI GGATG 6 cut(s) 103, 270, 1029, 1036, 1145, 1362
BseLI CCNNNNNNNGG 5 cut(s) 1168, 1342, 1345, 1346, 1372
BseMI GCAATG 1 cut(s) 918
BseMII CTCAG 4 cut(s) 612, 653, 792, 1449
BseNI ACTGG 2 cut(s) 178, 437
BseRI GAGGAG 3 cut(s) 576, 640, 1151
BseSI GKGCMC 2 cut(s) 585, 837
BseXI GCAGC 2 cut(s) 558, 924
BseYI CCCAGC 3 cut(s) 697, 753, 830
BsgI GTGCAG 1 cut(s) 22
Bsh1236I CGCG 4 cut(s) 195, 212, 635, 1072
Bsh1285I CGRYCG 1 cut(s) 1454
BshFI GGCC 6 cut(s) 347, 455, 476, 899, 1046, 1183
BshNI GGYRCC 1 cut(s) 582
BsiEI CGRYCG 1 cut(s) 1454
BsiHKAI GWGCWC 2 cut(s) 144, 206
BsiSI CCGG 1 cut(s) 491
BslFI GGGAC 2 cut(s) 185, 443
BslI CCNNNNNNNGG 5 cut(s) 1168, 1342, 1345, 1346, 1372
BsmAI GTCTC 4 cut(s) 1188, 1318, 1344, 1450
BsmBI CGTCTC 1 cut(s) 1188
BsmFI GGGAC 2 cut(s) 185, 443
BsmI GAATGC 1 cut(s) 1098
BsnI GGCC 6 cut(s) 347, 455, 476, 899, 1046, 1183
Bsp119I TTCGAA 1 cut(s) 819
Bsp1286I GDGCHC 4 cut(s) 144, 206, 585, 837
Bsp1407I TGTACA 1 cut(s) 111
Bsp143I GATC 3 cut(s) 487, 874, 1451
BspACI CCGC 4 cut(s) 169, 635, 1070, 1280
BspANI GGCC 6 cut(s) 347, 455, 476, 899, 1046, 1183
BspCNI CTCAG 4 cut(s) 613, 652, 793, 1448
BspFNI CGCG 4 cut(s) 195, 212, 635, 1072
BspHI TCATGA 1 cut(s) 984
BspLI GGNNCC 4 cut(s) 584, 1151, 1184, 1278
BspMI ACCTGC 1 cut(s) 1118
BspOI GCTAGC 1 cut(s) 659
BspPI GGATC 1 cut(s) 482
BspQI GCTCTTC 1 cut(s) 1001
BspT104I TTCGAA 1 cut(s) 819
BspT107I GGYRCC 1 cut(s) 582
BsrDI GCAATG 1 cut(s) 918
BsrGI TGTACA 1 cut(s) 111
BsrI ACTGG 2 cut(s) 178, 437
BssECI CCNNGG 4 cut(s) 969, 1135, 1265, 1301
BssMI GATC 3 cut(s) 487, 874, 1451
BssSI CACGAG 1 cut(s) 62
Bst2BI CACGAG 1 cut(s) 62
Bst2UI CCWGG 4 cut(s) 95, 1137, 1266, 1367
Bst4CI ACNGT 1 cut(s) 671
Bst6I CTCTTC 2 cut(s) 1001, 1404
BstAUI TGTACA 1 cut(s) 111
BstBAI YACGTR 1 cut(s) 136
BstBI TTCGAA 1 cut(s) 819
BstC8I GCNNGC 6 cut(s) 27, 345, 657, 777, 1074, 1235
BstDEI CTNAG 7 cut(s) 70, 556, 621, 639, 801, 860, 1435
BstDSI CCRYGG 2 cut(s) 969, 1301
BstEII GGTNACC 1 cut(s) 1130
BstENI CCTNNNNNAGG 2 cut(s) 1166, 1340
BstF5I GGATG 6 cut(s) 103, 270, 1029, 1036, 1145, 1362
BstFNI CGCG 4 cut(s) 195, 212, 635, 1072
BstH2I RGCGCY 1 cut(s) 1255
BstHHI GCGC 5 cut(s) 25, 195, 214, 976, 1254
BstKTI GATC 3 cut(s) 490, 877, 1454
BstMAI GTCTC 4 cut(s) 1188, 1318, 1344, 1450
BstMBI GATC 3 cut(s) 487, 874, 1451
BstMCI CGRYCG 1 cut(s) 1454
BstMWI GCNNNNNNNGC 6 cut(s) 201, 580, 878, 1093, 1189, 1230
BstNI CCWGG 4 cut(s) 95, 1137, 1266, 1367
BstNSI RCATGY 2 cut(s) 1233, 1413
BstPI GGTNACC 1 cut(s) 1130
BstSCI CCNGG 4 cut(s) 93, 1135, 1264, 1365
BstSFI CTRYAG 1 cut(s) 355
BstSLI GKGCMC 2 cut(s) 585, 837
BstUI CGCG 4 cut(s) 195, 212, 635, 1072
BstV1I GCAGC 2 cut(s) 558, 924
BstV2I GAAGAC 3 cut(s) 49, 392, 725
BstX2I RGATCY 1 cut(s) 487
BstYI RGATCY 1 cut(s) 487
Bsu36I CCTNAGG 1 cut(s) 556
BsuI GTATCC 1 cut(s) 1166
BsuRI GGCC 6 cut(s) 347, 455, 476, 899, 1046, 1183
BtgI CCRYGG 2 cut(s) 969, 1301
BtrI CACGTC 1 cut(s) 681
BtsCI GGATG 6 cut(s) 103, 270, 1029, 1036, 1145, 1362
BtsIMutI CAGTG 1 cut(s) 667
BveI ACCTGC 1 cut(s) 1118
Cac8I GCNNGC 6 cut(s) 27, 345, 657, 777, 1074, 1235
CciI TCATGA 1 cut(s) 984
CfoI GCGC 5 cut(s) 25, 195, 214, 976, 1254
Cfr13I GGNCC 3 cut(s) 493, 1149, 1182
Csp6I GTAC 4 cut(s) 67, 91, 112, 631
CviAII CATG 5 cut(s) 426, 985, 1154, 1230, 1410
CviQI GTAC 4 cut(s) 67, 91, 112, 631
DdeI CTNAG 7 cut(s) 70, 556, 621, 639, 801, 860, 1435
DpnI GATC 3 cut(s) 489, 876, 1453
DpnII GATC 3 cut(s) 487, 874, 1451
DraIII CACNNNGTG 1 cut(s) 1122
EaeI YGGCCR 3 cut(s) 345, 897, 1044
Eam1104I CTCTTC 2 cut(s) 1001, 1404
EarI CTCTTC 2 cut(s) 1001, 1404
Eco147I AGGCCT 1 cut(s) 455
Eco47I GGWCC 2 cut(s) 493, 1149
Eco81I CCTNAGG 1 cut(s) 556
Eco91I GGTNACC 1 cut(s) 1130
EcoNI CCTNNNNNAGG 2 cut(s) 1166, 1340
EcoO109I RGGNCCY 1 cut(s) 1149
EcoO65I GGTNACC 1 cut(s) 1130
EcoRII CCWGG 4 cut(s) 93, 1135, 1264, 1365
Esp3I CGTCTC 1 cut(s) 1188
FaeI CATG 5 cut(s) 429, 988, 1157, 1233, 1413
FalI AAGNNNNNCTT 2 cut(s) 191, 223
FaqI GGGAC 2 cut(s) 185, 443
FatI CATG 5 cut(s) 425, 984, 1153, 1229, 1409
FauI CCCGC 1 cut(s) 162
Fnu4HI GCNGC 3 cut(s) 572, 636, 913
FokI GGATG 6 cut(s) 110, 277, 1036, 1043, 1152, 1349
Fsp4HI GCNGC 3 cut(s) 572, 636, 913
FspBI CTAG 3 cut(s) 125, 656, 1462
GlaI GCGC 5 cut(s) 24, 194, 213, 975, 1253
GluI GCNGC 3 cut(s) 572, 636, 913
GsaI CCCAGC 3 cut(s) 701, 757, 834
GsuI CTGGAG 3 cut(s) 454, 977, 1248
HaeII RGCGCY 1 cut(s) 1255
HaeIII GGCC 6 cut(s) 347, 455, 476, 899, 1046, 1183
HapII CCGG 1 cut(s) 491
HhaI GCGC 5 cut(s) 25, 195, 214, 976, 1254
Hin1II CATG 5 cut(s) 429, 988, 1157, 1233, 1413
Hin6I GCGC 5 cut(s) 23, 193, 212, 974, 1252
HinP1I GCGC 5 cut(s) 23, 193, 212, 974, 1252
HincII GTYRAC 3 cut(s) 15, 765, 1378
HindII GTYRAC 3 cut(s) 15, 765, 1378
HinfI GANTC 4 cut(s) 564, 952, 965, 1261
HpaI GTTAAC 1 cut(s) 765
HpaII CCGG 1 cut(s) 491
HphI GGTGA 3 cut(s) 433, 1006, 1124
Hpy166II GTNNAC 5 cut(s) 15, 91, 112, 765, 1378
Hpy188I TCNGA 3 cut(s) 547, 616, 1438
Hpy8I GTNNAC 5 cut(s) 15, 91, 112, 765, 1378
Hpy99I CGWCG 1 cut(s) 1017
HpyAV CCTTC 8 cut(s) 217, 445, 466, 640, 955, 991, 995, 1336
HpyCH4III ACNGT 1 cut(s) 671
HpyCH4IV ACGT 5 cut(s) 135, 328, 361, 680, 940
HpyCH4V TGCA 3 cut(s) 39, 574, 1157
HpyF10VI GCNNNNNNNGC 6 cut(s) 201, 580, 878, 1093, 1189, 1230
HpyF3I CTNAG 7 cut(s) 70, 556, 621, 639, 801, 860, 1435
HpySE526I ACGT 5 cut(s) 135, 328, 361, 680, 940
Hsp92II CATG 5 cut(s) 429, 988, 1157, 1233, 1413
HspAI GCGC 5 cut(s) 23, 193, 212, 974, 1252
KspAI GTTAAC 1 cut(s) 765
Kzo9I GATC 3 cut(s) 487, 874, 1451
LguI GCTCTTC 1 cut(s) 1001
LmnI GCTCC 1 cut(s) 209
Lsp1109I GCAGC 2 cut(s) 558, 924
LweI GCATC 5 cut(s) 529, 844, 924, 1179, 1371
MaeI CTAG 3 cut(s) 125, 656, 1462
MaeII ACGT 5 cut(s) 135, 328, 361, 680, 940
MaeIII GTNAC 6 cut(s) 217, 236, 421, 1109, 1130, 1201
MalI GATC 3 cut(s) 489, 876, 1453
MboI GATC 3 cut(s) 487, 874, 1451
MflI RGATCY 1 cut(s) 487
MhlI GDGCHC 4 cut(s) 144, 206, 585, 837
MlsI TGGCCA 3 cut(s) 347, 899, 1046
MluCI AATT 6 cut(s) 349, 373, 442, 663, 727, 814
MluNI TGGCCA 3 cut(s) 347, 899, 1046
MlyI GAGTC 3 cut(s) 573, 961, 1255
MmeI TCCRAC 2 cut(s) 184, 1254
Mox20I TGGCCA 3 cut(s) 347, 899, 1046
MscI TGGCCA 3 cut(s) 347, 899, 1046
MseI TTAA 2 cut(s) 398, 764
MslI CAYNNNNRTG 4 cut(s) 44, 107, 989, 1040
Msp20I TGGCCA 3 cut(s) 347, 899, 1046
MspA1I CMGCKG 1 cut(s) 1282
MspI CCGG 1 cut(s) 491
MspR9I CCNGG 4 cut(s) 95, 1137, 1266, 1367
Mva1269I GAATGC 1 cut(s) 1098
MvaI CCWGG 4 cut(s) 95, 1137, 1266, 1367
MvnI CGCG 4 cut(s) 195, 212, 635, 1072
MwoI GCNNNNNNNGC 6 cut(s) 201, 580, 878, 1093, 1189, 1230
NdeII GATC 3 cut(s) 487, 874, 1451
NheI GCTAGC 1 cut(s) 655
NlaIII CATG 5 cut(s) 429, 988, 1157, 1233, 1413
NlaIV GGNNCC 4 cut(s) 584, 1151, 1184, 1278
NmuCI GTSAC 6 cut(s) 217, 236, 421, 1109, 1130, 1201
NspI RCATGY 2 cut(s) 1233, 1413
NspV TTCGAA 1 cut(s) 819
PagI TCATGA 1 cut(s) 984
PceI AGGCCT 1 cut(s) 455
PciSI GCTCTTC 1 cut(s) 1001
PcsI WCGNNNNNNNCGW 1 cut(s) 804
PctI GAATGC 1 cut(s) 1098
PfeI GAWTC 1 cut(s) 965
PflFI GACNNNGTC 1 cut(s) 1199
PkrI GCNGC 3 cut(s) 573, 637, 914
Ple19I CGATCG 1 cut(s) 1454
PleI GAGTC 3 cut(s) 572, 960, 1255
PpsI GAGTC 3 cut(s) 572, 960, 1255
Ppu21I YACGTR 1 cut(s) 136
PpuMI RGGWCCY 1 cut(s) 1149
Psp5II RGGWCCY 1 cut(s) 1149
Psp6I CCWGG 4 cut(s) 93, 1135, 1264, 1365
PspEI GGTNACC 1 cut(s) 1130
PspFI CCCAGC 3 cut(s) 697, 753, 830
PspGI CCWGG 4 cut(s) 93, 1135, 1264, 1365
PspN4I GGNNCC 4 cut(s) 584, 1151, 1184, 1278
PspPI GGNCC 3 cut(s) 493, 1149, 1182
PspPPI RGGWCCY 1 cut(s) 1149
PsuI RGATCY 1 cut(s) 487
PsyI GACNNNGTC 1 cut(s) 1199
PvuI CGATCG 1 cut(s) 1454
RsaI GTAC 4 cut(s) 68, 92, 113, 632
RsaNI GTAC 4 cut(s) 67, 91, 112, 631
RseI CAYNNNNRTG 4 cut(s) 44, 107, 989, 1040
SapI GCTCTTC 1 cut(s) 1001
SaqAI TTAA 2 cut(s) 398, 764
SatI GCNGC 3 cut(s) 572, 636, 913
Sau3AI GATC 3 cut(s) 487, 874, 1451
Sau96I GGNCC 3 cut(s) 493, 1149, 1182
ScaI AGTACT 1 cut(s) 68
SchI GAGTC 3 cut(s) 573, 961, 1255
ScrFI CCNGG 4 cut(s) 95, 1137, 1266, 1367
SduI GDGCHC 4 cut(s) 144, 206, 585, 837
SfaNI GCATC 5 cut(s) 529, 844, 924, 1179, 1371
SfcI CTRYAG 1 cut(s) 355
SfuI TTCGAA 1 cut(s) 819
SinI GGWCC 2 cut(s) 493, 1149
SmiMI CAYNNNNRTG 4 cut(s) 44, 107, 989, 1040
SmlI CTYRAG 2 cut(s) 887, 1163
SmoI CTYRAG 2 cut(s) 887, 1163
Sse9I AATT 6 cut(s) 349, 373, 442, 663, 727, 814
SseBI AGGCCT 1 cut(s) 455
SsiI CCGC 4 cut(s) 169, 635, 1070, 1280
SspMI CTAG 3 cut(s) 125, 656, 1462
StuI AGGCCT 1 cut(s) 455
StyD4I CCNGG 4 cut(s) 93, 1135, 1264, 1365
TaaI ACNGT 1 cut(s) 671
TaiI ACGT 5 cut(s) 138, 331, 364, 683, 943
TaqI TCGA 5 cut(s) 781, 807, 819, 908, 1454
TasI AATT 6 cut(s) 349, 373, 442, 663, 727, 814
TatI WGTACW 2 cut(s) 66, 111
TauI GCSGC 1 cut(s) 638
TfiI GAWTC 1 cut(s) 965
Tru1I TTAA 2 cut(s) 398, 764
Tru9I TTAA 2 cut(s) 398, 764
TscAI CASTG 1 cut(s) 674
TseFI GTSAC 6 cut(s) 217, 236, 421, 1109, 1130, 1201
TseI GCWGC 2 cut(s) 571, 912
Tsp45I GTSAC 6 cut(s) 217, 236, 421, 1109, 1130, 1201
TspDTI ATGAA 4 cut(s) 62, 355, 612, 1001
TspGWI ACGGA 3 cut(s) 958, 1095, 1220
TspRI CASTG 1 cut(s) 674
Tth111I GACNNNGTC 1 cut(s) 1199
VpaK11BI GGWCC 2 cut(s) 493, 1149
XagI CCTNNNNNAGG 2 cut(s) 1166, 1340
XceI RCATGY 2 cut(s) 1233, 1413
XspI CTAG 3 cut(s) 125, 656, 1462
ZrmI AGTACT 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.