Prupe.7G034800_v2.0.a1
ERF Family

DNA RNA polymerases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0000291
Physical Location & Seq
Reverse (-)
6450141 .. 6451525
1385 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G034800.1

Sequence Viewer

Length: 1188 bp
ATGCAACCTGATGACTTTGTTGATTGGCTCAATACCGTTGAGCGTATATTTGACTACAAAGAGGTGTCGGATGAGAAGAAAGTTAAGATCGTGGCCATTAAATTGAAGAGGAATGCCTCTGCATGGTGGGAGCAGCTACAGACTCGGCGTGATCGTACCGGGAAATCCAAAATTAAAACCTGGGAGAAAATGAAGAAAGAGCTCAAGAGAAAATTTTTGCCAGAAAACTACCTTCAAACAAACTTCTTGAAACTTCATAATCTGCGACAGGGAAATTGGGCTATTGAGGAATATACTGAAGAATTTGATCTCTTAACCATGAGGTGTGGACTCATTGAAGAAGAAGAACACACAGTCGCACGTTATCTTGGAGGGATGCGTAGAGAAATTCATGATGTGGTGGTTTTACAGCAATATTGGAGTTATGATGATGTCTTCAAGTTAGCCATACAAGTAGAGAAACAGATAAAGACACGATCAAGGAGTACTAGAATAGAGGGTTCTGAGCAAAAAAATTCTTGGATGACTAAAGGCTCATCAAATTCTGAGCCAGGGAAGCATGAAGCACCCAAGACCAATGCACCAGAGCACTTTACTGCCAACAAACCGAAGGGGATCAAGTGTTTCAAATGTTCTGGCATAGGACATATTGCCTCTGAATGTCCTAACCGAAAAATTGAGATGGTTGATAAACTGAATTTGAAGACTGAAAAGAAGCCAATCTCATACAAGCTGTCTTGGGTCAAAAAAGGGAATGAAGTTGTGGTGAATCAACGTTGCCTAGTGACATTCTCCATCGGGCAAAAACCTTGGCAATTTGATCGCAAGGCCACACATGACGGATACAAAAATACATATACCTTCATCAAAGATGGTACGAAGGTTATTTTAGGCCCCTCCCAATCCGAATTTAATGTCAAATCCACGAAAATTGGTGCTGGAAGCTTTCTAACCAAAGGAAAATTCCTAAAAGAAGCAGAGGAGAGTGGCGATATGTACATGCTGATGGTGAAAGAGTCAAATCCAGATGTTCTTAATTTTCCTAAAGAATTAATACCTCTTTTGCAGGAATTCAATGATGTTATTCCTGAAGAATTACCCGATGGGTTACCTCCTATGCGAGACATCCAGCATTGCATAGATTTGATTCCAGGTCACTACTACAAAAAAGAAAAAAGACGACGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 Retrotrans_gag rve zf-CCHC zf-H2C2

Protein Analysis

396

Amino Acids

46.16

Weight (kDa)

9.25

Isoelectric Point (pI)

44.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000291)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00860
fragaria_vesca FvH4_1g23712 FvH4_1g29809 FvH4_1g29810 FvH4_2g02661 FvH4_2g13451 FvH4_2g17921 FvH4_2g17922 FvH4_2g19251 FvH4_2g19252 FvH4_2g28221 FvH4_2g35961 FvH4_3g10372 FvH4_3g12461 FvH4_3g12461 FvH4_3g27861 FvH4_3g34591 FvH4_3g40201 FvH4_3g44612 FvH4_4g08352 FvH4_4g12251 FvH4_4g12742 FvH4_4g13904 FvH4_4g14287 FvH4_4g15243 FvH4_4g24071 FvH4_4g33448 FvH4_5g21912 FvH4_5g39371 FvH4_6g14992 FvH4_6g15221 FvH4_6g20603 FvH4_6g31093 FvH4_6g32372 FvH4_6g33012
malus_domestica MD11G1009100.v1.1 MD13G1145000.v1.1 MD16G1138700.v1.1
prunus_persica Prupe.5G246300_v2.0.a1 Prupe.7G034800_v2.0.a1 Prupe.8G084500_v2.0.a1
pyrus_communis pycom01g18240 pycom04g00330 pycom05g09010 pycom06g01670 pycom06g01690 pycom06g07180 pycom06g11620 pycom10g05720 pycom1134g00040 pycom1134g00060 pycom12486g00010 pycom12555g00230 pycom13g21670 pycom13g23130 pycom13g23140 pycom14g10580
rosa_chinensis RchiOBHm_Chr1g0330691 RchiOBHm_Chr2g0106171 RchiOBHm_Chr2g0134731 RchiOBHm_Chr2g0142791 RchiOBHm_Chr2g0149861 RchiOBHm_Chr3g0452401 RchiOBHm_Chr3g0461881 RchiOBHm_Chr4g0401341 RchiOBHm_Chr5g0075641 RchiOBHm_Chr6g0265961 RchiOBHm_Chr7g0200201 RchiOBHm_Chr7g0237811
rosa_laevigata RLG00000002773
rosa_multiflora Rmu_co8037806.1_g000001 Rmu_co8445989.1_g000001 Rmu_sc0000745.1_g000039 Rmu_sc0004448.1_g000029 Rmu_sc0004488.1_g000002 Rmu_sc0004591.1_g000018 Rmu_sc0005065.1_g000030 Rmu_sc0005150.1_g000005 Rmu_sc0005654.1_g000011 Rmu_sc0006986.1_g000016
rosa_roxburghii Rroxscaffold_164G00436490 Rroxscaffold_175G00432490 Rroxscaffold_1G00059440 Rroxscaffold_1G00064410 Rroxscaffold_2G00100310 Rroxscaffold_2G00128170 Rroxscaffold_3G00239420 Rroxscaffold_3G00264970 Rroxscaffold_3G00271550 Rroxscaffold_4G00300240 Rroxscaffold_5G00385050 Rroxscaffold_6G00399720
rosa_rugosa Rorug02G0252200
rosa_samantha Rh2DG251900 Rh7CG329900
rosa_wichuraiana Rw0G004800 Rw1G000850 Rw1G022350 Rw2G027030 Rw2G027760 Rw2G028410 Rw2G029130 Rw2G029390 Rw2G032490 Rw2G039460 Rw2G047800 Rw2G050340 Rw3G026430 Rw4G018370 Rw4G030750 Rw4G033140 Rw5G011950 Rw5G012010 Rw5G029280 Rw5G040190 Rw5G044570 Rw5G048240 Rw6G000340 Rw6G010140 Rw6G026480 Rw7G033750 Rw7G037250 Rw7G042080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 775
AclWI GGATC 1 cut(s) 623
AcoI YGGCCR 1 cut(s) 93
AcsI RAATTY 9 cut(s) 212, 302, 387, 514, 541, 697, 908, 962, 1070
AcuI CTGAAG 2 cut(s) 318, 1110
AfaI GTAC 4 cut(s) 157, 487, 877, 998
AfiI CCNNNNNNNGG 1 cut(s) 123
AgsI TTSAA 8 cut(s) 106, 236, 250, 338, 439, 628, 703, 1075
AjnI CCWGG 3 cut(s) 179, 550, 1150
AjuI GAANNNNNNNTTGG 2 cut(s) 947, 979
AluBI AGCT 4 cut(s) 136, 202, 733, 945
AluI AGCT 4 cut(s) 136, 202, 733, 945
Alw21I GWGCWC 2 cut(s) 204, 591
Alw26I GTCTC 1 cut(s) 1116
AlwI GGATC 1 cut(s) 623
AoxI GGCC 3 cut(s) 93, 828, 892
ApeKI GCWGC 1 cut(s) 133
ApoI RAATTY 9 cut(s) 212, 302, 387, 514, 541, 697, 908, 962, 1070
ArsI GACNNNNNNTTYG 2 cut(s) 900, 932
AseI ATTAAT 1 cut(s) 1052
AspS9I GGNCC 1 cut(s) 893
AsuC2I CCSGG 1 cut(s) 160
AsuHPI GGTGA 2 cut(s) 778, 1021
BaeI ACNNNNGTAYC 2 cut(s) 867, 900
BalI TGGCCA 1 cut(s) 95
BanII GRGCYC 1 cut(s) 204
BbsI GAAGAC 2 cut(s) 427, 710
Bbv12I GWGCWC 2 cut(s) 204, 591
BbvI GCAGC 1 cut(s) 145
BccI CCATC 5 cut(s) 676, 803, 866, 1000, 1097
BcgI CGANNNNNNTGC 2 cut(s) 803, 837
BciT130I CCWGG 3 cut(s) 181, 552, 1152
BciVI GTATCC 1 cut(s) 836
BcnI CCSGG 1 cut(s) 160
BcoDI GTCTC 1 cut(s) 1116
BfaI CTAG 2 cut(s) 489, 782
BfmI CTRYAG 1 cut(s) 137
BfuI GTATCC 1 cut(s) 836
BisI GCNGC 1 cut(s) 134
BlsI GCNGC 1 cut(s) 135
BmcAI AGTACT 1 cut(s) 487
Bme1390I CCNGG 4 cut(s) 160, 181, 552, 1152
BmgT120I GGNCC 1 cut(s) 893
BmiI GGNNCC 1 cut(s) 895
BmrFI CCNGG 4 cut(s) 160, 181, 552, 1152
BmsI GCATC 1 cut(s) 366
BpiI GAAGAC 2 cut(s) 427, 710
BpuEI CTTGAG 1 cut(s) 188
BpuMI CCSGG 1 cut(s) 160
BsaJI CCNNGG 3 cut(s) 180, 551, 809
Bsc4I CCNNNNNNNGG 1 cut(s) 123
Bse3DI GCAATG 1 cut(s) 1132
BseBI CCWGG 3 cut(s) 181, 552, 1152
BseDI CCNNGG 3 cut(s) 180, 551, 809
BseGI GGATG 4 cut(s) 76, 381, 528, 1125
BseLI CCNNNNNNNGG 1 cut(s) 123
BseMI GCAATG 1 cut(s) 1132
BseMII CTCAG 2 cut(s) 495, 537
BseRI GAGGAG 1 cut(s) 995
BseXI GCAGC 1 cut(s) 145
BshFI GGCC 3 cut(s) 95, 830, 894
BsiHKAI GWGCWC 2 cut(s) 204, 591
BsiSI CCGG 1 cut(s) 159
BslI CCNNNNNNNGG 1 cut(s) 123
BsmAI GTCTC 1 cut(s) 1116
BsmI GAATGC 1 cut(s) 118
BsnI GGCC 3 cut(s) 95, 830, 894
Bsp1286I GDGCHC 2 cut(s) 204, 591
Bsp1407I TGTACA 1 cut(s) 996
Bsp143I GATC 6 cut(s) 87, 151, 307, 476, 615, 820
BspANI GGCC 3 cut(s) 95, 830, 894
BspCNI CTCAG 2 cut(s) 496, 538
BspHI TCATGA 1 cut(s) 391
BspLI GGNNCC 1 cut(s) 895
BspPI GGATC 1 cut(s) 623
BsrDI GCAATG 1 cut(s) 1132
BsrGI TGTACA 1 cut(s) 996
BssECI CCNNGG 3 cut(s) 180, 551, 809
BssMI GATC 6 cut(s) 87, 151, 307, 476, 615, 820
BssT1I CCWWGG 1 cut(s) 809
Bst2UI CCWGG 3 cut(s) 181, 552, 1152
Bst4CI ACNGT 3 cut(s) 37, 355, 1185
Bst6I CTCTTC 1 cut(s) 101
BstAUI TGTACA 1 cut(s) 996
BstDEI CTNAG 2 cut(s) 504, 546
BstEII GGTNACC 1 cut(s) 1107
BstF5I GGATG 4 cut(s) 76, 381, 528, 1125
BstKTI GATC 6 cut(s) 90, 154, 310, 479, 618, 823
BstMAI GTCTC 1 cut(s) 1116
BstMBI GATC 6 cut(s) 87, 151, 307, 476, 615, 820
BstMWI GCNNNNNNNGC 1 cut(s) 556
BstNI CCWGG 3 cut(s) 181, 552, 1152
BstNSI RCATGY 1 cut(s) 1003
BstPI GGTNACC 1 cut(s) 1107
BstSCI CCNGG 4 cut(s) 158, 179, 550, 1150
BstSFI CTRYAG 1 cut(s) 137
BstV1I GCAGC 1 cut(s) 145
BstV2I GAAGAC 2 cut(s) 427, 710
BsuI GTATCC 1 cut(s) 836
BsuRI GGCC 3 cut(s) 95, 830, 894
BtsCI GGATG 4 cut(s) 76, 381, 528, 1125
CciI TCATGA 1 cut(s) 391
Cfr13I GGNCC 1 cut(s) 893
Csp6I GTAC 4 cut(s) 156, 486, 876, 997
CspCI CAANNNNNGTGG 2 cut(s) 913, 948
CviAII CATG 6 cut(s) 123, 319, 392, 560, 836, 1000
CviQI GTAC 4 cut(s) 156, 486, 876, 997
DdeI CTNAG 2 cut(s) 504, 546
DpnI GATC 6 cut(s) 89, 153, 309, 478, 617, 822
DpnII GATC 6 cut(s) 87, 151, 307, 476, 615, 820
EaeI YGGCCR 1 cut(s) 93
Eam1104I CTCTTC 1 cut(s) 101
EarI CTCTTC 1 cut(s) 101
Ecl136II GAGCTC 1 cut(s) 202
Eco130I CCWWGG 1 cut(s) 809
Eco24I GRGCYC 1 cut(s) 204
Eco53kI GAGCTC 1 cut(s) 202
Eco57I CTGAAG 2 cut(s) 318, 1110
Eco91I GGTNACC 1 cut(s) 1107
EcoICRI GAGCTC 1 cut(s) 202
EcoO109I RGGNCCY 1 cut(s) 893
EcoO65I GGTNACC 1 cut(s) 1107
EcoRI GAATTC 1 cut(s) 1070
EcoRII CCWGG 3 cut(s) 179, 550, 1150
EcoT14I CCWWGG 1 cut(s) 809
EcoT38I GRGCYC 1 cut(s) 204
ErhI CCWWGG 1 cut(s) 809
FaeI CATG 6 cut(s) 126, 322, 395, 563, 839, 1003
FatI CATG 6 cut(s) 122, 318, 391, 559, 835, 999
Fnu4HI GCNGC 1 cut(s) 134
FokI GGATG 4 cut(s) 83, 388, 535, 1112
FriOI GRGCYC 1 cut(s) 204
Fsp4HI GCNGC 1 cut(s) 134
FspBI CTAG 2 cut(s) 489, 782
GluI GCNGC 1 cut(s) 134
HaeIII GGCC 3 cut(s) 95, 830, 894
HapII CCGG 1 cut(s) 159
Hin1II CATG 6 cut(s) 126, 322, 395, 563, 839, 1003
HindIII AAGCTT 1 cut(s) 943
HinfI GANTC 5 cut(s) 142, 330, 769, 1016, 1147
HpaII CCGG 1 cut(s) 159
HphI GGTGA 2 cut(s) 778, 1021
Hpy166II GTNNAC 1 cut(s) 329
Hpy188I TCNGA 5 cut(s) 70, 505, 547, 658, 907
Hpy188III TCNNGA 5 cut(s) 205, 247, 392, 1025, 1088
Hpy8I GTNNAC 1 cut(s) 329
Hpy99I CGWCG 1 cut(s) 1185
HpyAV CCTTC 4 cut(s) 242, 604, 871, 874
HpyCH4III ACNGT 3 cut(s) 37, 355, 1185
HpyCH4IV ACGT 2 cut(s) 361, 775
HpyCH4V TGCA 5 cut(s) 4, 122, 581, 1066, 1137
HpyF10VI GCNNNNNNNGC 1 cut(s) 556
HpyF3I CTNAG 2 cut(s) 504, 546
HpySE526I ACGT 2 cut(s) 361, 775
Hsp92II CATG 6 cut(s) 126, 322, 395, 563, 839, 1003
Kzo9I GATC 6 cut(s) 87, 151, 307, 476, 615, 820
LmnI GCTCC 1 cut(s) 130
Lsp1109I GCAGC 1 cut(s) 145
LweI GCATC 1 cut(s) 366
MaeI CTAG 2 cut(s) 489, 782
MaeII ACGT 2 cut(s) 361, 775
MaeIII GTNAC 3 cut(s) 784, 1107, 1154
MalI GATC 6 cut(s) 89, 153, 309, 478, 617, 822
MboI GATC 6 cut(s) 87, 151, 307, 476, 615, 820
MhlI GDGCHC 2 cut(s) 204, 591
MlsI TGGCCA 1 cut(s) 95
MluNI TGGCCA 1 cut(s) 95
MlyI GAGTC 3 cut(s) 136, 324, 1025
MmeI TCCRAC 1 cut(s) 48
Mox20I TGGCCA 1 cut(s) 95
MscI TGGCCA 1 cut(s) 95
MseI TTAA 7 cut(s) 84, 99, 174, 314, 912, 1035, 1052
MslI CAYNNNNRTG 1 cut(s) 1004
Msp20I TGGCCA 1 cut(s) 95
MspI CCGG 1 cut(s) 159
MspR9I CCNGG 4 cut(s) 160, 181, 552, 1152
Mva1269I GAATGC 1 cut(s) 118
MvaI CCWGG 3 cut(s) 181, 552, 1152
MwoI GCNNNNNNNGC 1 cut(s) 556
NciI CCSGG 1 cut(s) 160
NdeII GATC 6 cut(s) 87, 151, 307, 476, 615, 820
NlaIII CATG 6 cut(s) 126, 322, 395, 563, 839, 1003
NlaIV GGNNCC 1 cut(s) 895
NmeAIII GCCGAG 1 cut(s) 124
NmuCI GTSAC 2 cut(s) 784, 1154
NspI RCATGY 1 cut(s) 1003
PagI TCATGA 1 cut(s) 391
PcsI WCGNNNNNNNCGW 1 cut(s) 151
PctI GAATGC 1 cut(s) 118
PfeI GAWTC 2 cut(s) 769, 1147
PkrI GCNGC 1 cut(s) 135
PleI GAGTC 3 cut(s) 136, 324, 1024
PpsI GAGTC 3 cut(s) 136, 324, 1024
PshBI ATTAAT 1 cut(s) 1052
Psp124BI GAGCTC 1 cut(s) 204
Psp1406I AACGTT 1 cut(s) 775
Psp6I CCWGG 3 cut(s) 179, 550, 1150
PspEI GGTNACC 1 cut(s) 1107
PspGI CCWGG 3 cut(s) 179, 550, 1150
PspN4I GGNNCC 1 cut(s) 895
PspPI GGNCC 1 cut(s) 893
RsaI GTAC 4 cut(s) 157, 487, 877, 998
RsaNI GTAC 4 cut(s) 156, 486, 876, 997
RseI CAYNNNNRTG 1 cut(s) 1004
SacI GAGCTC 1 cut(s) 204
SaqAI TTAA 7 cut(s) 84, 99, 174, 314, 912, 1035, 1052
SatI GCNGC 1 cut(s) 134
Sau3AI GATC 6 cut(s) 87, 151, 307, 476, 615, 820
Sau96I GGNCC 1 cut(s) 893
ScaI AGTACT 1 cut(s) 487
SchI GAGTC 3 cut(s) 136, 324, 1025
ScrFI CCNGG 4 cut(s) 160, 181, 552, 1152
SduI GDGCHC 2 cut(s) 204, 591
SfaNI GCATC 1 cut(s) 366
SfcI CTRYAG 1 cut(s) 137
SmiMI CAYNNNNRTG 1 cut(s) 1004
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
SspI AATATT 1 cut(s) 416
SspMI CTAG 2 cut(s) 489, 782
SstI GAGCTC 1 cut(s) 204
StyD4I CCNGG 4 cut(s) 158, 179, 550, 1150
StyI CCWWGG 1 cut(s) 809
TaaI ACNGT 3 cut(s) 37, 355, 1185
TaiI ACGT 2 cut(s) 364, 778
TatI WGTACW 2 cut(s) 485, 996
TfiI GAWTC 2 cut(s) 769, 1147
Tru1I TTAA 7 cut(s) 84, 99, 174, 314, 912, 1035, 1052
Tru9I TTAA 7 cut(s) 84, 99, 174, 314, 912, 1035, 1052
TseFI GTSAC 2 cut(s) 784, 1154
TseI GCWGC 1 cut(s) 133
Tsp45I GTSAC 2 cut(s) 784, 1154
TspDTI ATGAA 6 cut(s) 206, 245, 380, 576, 771, 853
TspGWI ACGGA 1 cut(s) 855
VspI ATTAAT 1 cut(s) 1052
XapI RAATTY 9 cut(s) 212, 302, 387, 514, 541, 697, 908, 962, 1070
XceI RCATGY 1 cut(s) 1003
XspI CTAG 2 cut(s) 489, 782
ZrmI AGTACT 1 cut(s) 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.