DNA RNA polymerases superfamily protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 1025, 1314, 1404 |
| Acc36I | ACCTGC | 1 cut(s) | 421 |
| AccB1I | GGYRCC | 1 cut(s) | 1729 |
| AciI | CCGC | 5 cut(s) | 75, 648, 1132, 1135, 1897 |
| AclWI | GGATC | 1 cut(s) | 1615 |
| AcsI | RAATTY | 5 cut(s) | 123, 315, 345, 1213, 1652 |
| AcuI | CTGAAG | 4 cut(s) | 219, 270, 368, 749 |
| AfaI | GTAC | 2 cut(s) | 463, 1943 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 956, 1883 |
| AflIII | ACRYGT | 1 cut(s) | 1641 |
| AgsI | TTSAA | 8 cut(s) | 457, 611, 789, 802, 1658, 1712, 1808, 1819 |
| AjnI | CCWGG | 3 cut(s) | 618, 979, 1732 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1038, 1070 |
| AleI | CACNNNNGTG | 1 cut(s) | 1285 |
| Alw21I | GWGCWC | 1 cut(s) | 869 |
| Alw26I | GTCTC | 2 cut(s) | 1262, 1698 |
| AlwI | GGATC | 1 cut(s) | 1615 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 242, 638 |
| Ama87I | CYCGRG | 1 cut(s) | 1283 |
| AoxI | GGCC | 4 cut(s) | 190, 309, 1545, 1917 |
| ApeKI | GCWGC | 9 cut(s) | 41, 65, 77, 379, 467, 1129, 1206, 1258, 1690 |
| ApoI | RAATTY | 5 cut(s) | 123, 315, 345, 1213, 1652 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 383, 415 |
| AseI | ATTAAT | 2 cut(s) | 1167, 1923 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 366 |
| AspLEI | GCGC | 1 cut(s) | 1140 |
| AspS9I | GGNCC | 5 cut(s) | 106, 977, 1301, 1545, 1917 |
| AsuHPI | GGTGA | 4 cut(s) | 17, 1591, 1630, 2024 |
| AsuII | TTCGAA | 1 cut(s) | 2020 |
| AsuNHI | GCTAGC | 1 cut(s) | 1739 |
| AvaI | CYCGRG | 1 cut(s) | 1283 |
| AvaII | GGWCC | 3 cut(s) | 106, 977, 1301 |
| BanI | GGYRCC | 1 cut(s) | 1729 |
| BanII | GRGCYC | 1 cut(s) | 208 |
| BauI | CACGAG | 1 cut(s) | 828 |
| BbsI | GAAGAC | 2 cut(s) | 1815, 1974 |
| Bbv12I | GWGCWC | 1 cut(s) | 869 |
| BbvI | GCAGC | 9 cut(s) | 53, 64, 77, 391, 454, 1141, 1193, 1270, 1677 |
| BccI | CCATC | 6 cut(s) | 89, 97, 550, 1058, 1070, 1531 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 479, 513 |
| BciT130I | CCWGG | 3 cut(s) | 620, 981, 1734 |
| BcoDI | GTCTC | 2 cut(s) | 1262, 1698 |
| BfaI | CTAG | 6 cut(s) | 371, 627, 794, 1521, 1740, 1985 |
| BfmI | CTRYAG | 3 cut(s) | 468, 911, 1599 |
| BfuAI | ACCTGC | 1 cut(s) | 421 |
| BmcAI | AGTACT | 1 cut(s) | 463 |
| Bme1390I | CCNGG | 3 cut(s) | 620, 981, 1734 |
| Bme18I | GGWCC | 3 cut(s) | 106, 977, 1301 |
| BmeT110I | CYCGRG | 1 cut(s) | 1283 |
| BmgT120I | GGNCC | 5 cut(s) | 106, 977, 1301, 1545, 1917 |
| BmiI | GGNNCC | 5 cut(s) | 207, 1461, 1731, 1949, 1993 |
| BmrFI | CCNGG | 3 cut(s) | 620, 981, 1734 |
| BmsI | GCATC | 1 cut(s) | 1339 |
| BmtI | GCTAGC | 1 cut(s) | 1743 |
| BpiI | GAAGAC | 2 cut(s) | 1815, 1974 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1652, 1684 |
| BpmI | CTGGAG | 1 cut(s) | 1755 |
| Bpu14I | TTCGAA | 1 cut(s) | 2020 |
| BpuEI | CTTGAG | 2 cut(s) | 261, 1553 |
| BsaAI | YACGTR | 1 cut(s) | 212 |
| BsaJI | CCNNGG | 4 cut(s) | 619, 1376, 1626, 1776 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 956, 1883 |
| Bse1I | ACTGG | 4 cut(s) | 972, 1236, 1574, 1862 |
| BseBI | CCWGG | 3 cut(s) | 620, 981, 1734 |
| BseDI | CCNNGG | 4 cut(s) | 619, 1376, 1626, 1776 |
| BseGI | GGATG | 4 cut(s) | 1354, 1399, 1678, 1905 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 956, 1883 |
| BseMII | CTCAG | 7 cut(s) | 234, 642, 681, 684, 996, 1074, 1098 |
| BseNI | ACTGG | 4 cut(s) | 972, 1236, 1574, 1862 |
| BseRI | GAGGAG | 2 cut(s) | 1024, 1109 |
| BseXI | GCAGC | 9 cut(s) | 53, 64, 77, 391, 454, 1141, 1193, 1270, 1677 |
| BsgI | GTGCAG | 2 cut(s) | 1655, 1875 |
| Bsh1285I | CGRYCG | 1 cut(s) | 169 |
| BshFI | GGCC | 4 cut(s) | 192, 311, 1547, 1919 |
| BshNI | GGYRCC | 1 cut(s) | 1729 |
| BsiEI | CGRYCG | 1 cut(s) | 169 |
| BsiHKAI | GWGCWC | 1 cut(s) | 869 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1283 |
| BsiSI | CCGG | 1 cut(s) | 572 |
| BslFI | GGGAC | 2 cut(s) | 1427, 1758 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 956, 1883 |
| BsmAI | GTCTC | 2 cut(s) | 1262, 1698 |
| BsmFI | GGGAC | 2 cut(s) | 1427, 1758 |
| BsnI | GGCC | 4 cut(s) | 192, 311, 1547, 1919 |
| BsoBI | CYCGRG | 1 cut(s) | 1283 |
| Bsp119I | TTCGAA | 1 cut(s) | 2020 |
| Bsp1286I | GDGCHC | 2 cut(s) | 208, 869 |
| Bsp143I | GATC | 4 cut(s) | 166, 258, 1620, 1665 |
| BspACI | CCGC | 5 cut(s) | 75, 648, 1132, 1135, 1897 |
| BspANI | GGCC | 4 cut(s) | 192, 311, 1547, 1919 |
| BspCNI | CTCAG | 7 cut(s) | 235, 643, 680, 685, 997, 1075, 1099 |
| BspHI | TCATGA | 1 cut(s) | 1264 |
| BspLI | GGNNCC | 5 cut(s) | 207, 1461, 1731, 1949, 1993 |
| BspMAI | CTGCAG | 2 cut(s) | 472, 915 |
| BspMI | ACCTGC | 1 cut(s) | 421 |
| BspOI | GCTAGC | 1 cut(s) | 1743 |
| BspPI | GGATC | 1 cut(s) | 1615 |
| BspT104I | TTCGAA | 1 cut(s) | 2020 |
| BspT107I | GGYRCC | 1 cut(s) | 1729 |
| BsrI | ACTGG | 4 cut(s) | 972, 1236, 1574, 1862 |
| BssECI | CCNNGG | 4 cut(s) | 619, 1376, 1626, 1776 |
| BssMI | GATC | 4 cut(s) | 166, 258, 1620, 1665 |
| BssSI | CACGAG | 1 cut(s) | 828 |
| BssT1I | CCWWGG | 3 cut(s) | 1376, 1626, 1776 |
| Bst2BI | CACGAG | 1 cut(s) | 828 |
| Bst2UI | CCWGG | 3 cut(s) | 620, 981, 1734 |
| Bst4CI | ACNGT | 3 cut(s) | 634, 766, 1936 |
| Bst6I | CTCTTC | 4 cut(s) | 249, 452, 1054, 1653 |
| BstBAI | YACGTR | 1 cut(s) | 212 |
| BstBI | TTCGAA | 1 cut(s) | 2020 |
| BstC8I | GCNNGC | 3 cut(s) | 964, 1741, 1745 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 954 |
| BstF5I | GGATG | 4 cut(s) | 1354, 1399, 1678, 1905 |
| BstHHI | GCGC | 1 cut(s) | 1140 |
| BstKTI | GATC | 4 cut(s) | 169, 261, 1623, 1668 |
| BstMAI | GTCTC | 2 cut(s) | 1262, 1698 |
| BstMBI | GATC | 4 cut(s) | 166, 258, 1620, 1665 |
| BstMCI | CGRYCG | 1 cut(s) | 169 |
| BstNI | CCWGG | 3 cut(s) | 620, 981, 1734 |
| BstNSI | RCATGY | 3 cut(s) | 443, 1645, 1975 |
| BstSCI | CCNGG | 3 cut(s) | 618, 979, 1732 |
| BstSFI | CTRYAG | 3 cut(s) | 468, 911, 1599 |
| BstV1I | GCAGC | 9 cut(s) | 53, 64, 77, 391, 454, 1141, 1193, 1270, 1677 |
| BstV2I | GAAGAC | 2 cut(s) | 1815, 1974 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 116 |
| BsuRI | GGCC | 4 cut(s) | 192, 311, 1547, 1919 |
| BtsCI | GGATG | 4 cut(s) | 1354, 1399, 1678, 1905 |
| BtsI | GCAGTG | 2 cut(s) | 908, 1531 |
| BtsIMutI | CAGTG | 6 cut(s) | 639, 727, 908, 979, 1531, 1581 |
| BveI | ACCTGC | 1 cut(s) | 421 |
| Cac8I | GCNNGC | 3 cut(s) | 964, 1741, 1745 |
| CaiI | CAGNNNCTG | 2 cut(s) | 242, 638 |
| CciI | TCATGA | 1 cut(s) | 1264 |
| CfoI | GCGC | 1 cut(s) | 1140 |
| Cfr13I | GGNCC | 5 cut(s) | 106, 977, 1301, 1545, 1917 |
| Csp6I | GTAC | 2 cut(s) | 462, 1942 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 955, 990 |
| CviAII | CATG | 7 cut(s) | 91, 440, 447, 531, 1265, 1642, 1972 |
| CviQI | GTAC | 2 cut(s) | 462, 1942 |
| DpnI | GATC | 4 cut(s) | 168, 260, 1622, 1667 |
| DpnII | GATC | 4 cut(s) | 166, 258, 1620, 1665 |
| DraI | TTTAAA | 2 cut(s) | 955, 1552 |
| Eam1104I | CTCTTC | 4 cut(s) | 249, 452, 1054, 1653 |
| EarI | CTCTTC | 4 cut(s) | 249, 452, 1054, 1653 |
| EciI | GGCGGA | 1 cut(s) | 1912 |
| Eco130I | CCWWGG | 3 cut(s) | 1376, 1626, 1776 |
| Eco24I | GRGCYC | 1 cut(s) | 208 |
| Eco32I | GATATC | 1 cut(s) | 25 |
| Eco47I | GGWCC | 3 cut(s) | 106, 977, 1301 |
| Eco57I | CTGAAG | 4 cut(s) | 219, 270, 368, 749 |
| Eco88I | CYCGRG | 1 cut(s) | 1283 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 954 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1545 |
| EcoRII | CCWGG | 3 cut(s) | 618, 979, 1732 |
| EcoRV | GATATC | 1 cut(s) | 25 |
| EcoT14I | CCWWGG | 3 cut(s) | 1376, 1626, 1776 |
| EcoT38I | GRGCYC | 1 cut(s) | 208 |
| ErhI | CCWWGG | 3 cut(s) | 1376, 1626, 1776 |
| FaeI | CATG | 7 cut(s) | 94, 443, 450, 534, 1268, 1645, 1975 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1959, 1991 |
| FaqI | GGGAC | 2 cut(s) | 1427, 1758 |
| FatI | CATG | 7 cut(s) | 90, 439, 446, 530, 1264, 1641, 1971 |
| FokI | GGATG | 4 cut(s) | 1361, 1406, 1685, 1912 |
| FriOI | GRGCYC | 1 cut(s) | 208 |
| FspBI | CTAG | 6 cut(s) | 371, 627, 794, 1521, 1740, 1985 |
| GlaI | GCGC | 1 cut(s) | 1139 |
| GsuI | CTGGAG | 1 cut(s) | 1755 |
| HaeIII | GGCC | 4 cut(s) | 192, 311, 1547, 1919 |
| HapII | CCGG | 1 cut(s) | 572 |
| HhaI | GCGC | 1 cut(s) | 1140 |
| Hin1II | CATG | 7 cut(s) | 94, 443, 450, 534, 1268, 1645, 1975 |
| Hin6I | GCGC | 1 cut(s) | 1138 |
| HinP1I | GCGC | 1 cut(s) | 1138 |
| HinfI | GANTC | 5 cut(s) | 239, 245, 1100, 1771, 1846 |
| HpaII | CCGG | 1 cut(s) | 572 |
| HphI | GGTGA | 4 cut(s) | 17, 1591, 1630, 2024 |
| Hpy166II | GTNNAC | 9 cut(s) | 48, 72, 391, 880, 902, 1089, 1304, 1529, 2004 |
| Hpy188III | TCNNGA | 9 cut(s) | 371, 419, 743, 828, 844, 1106, 1265, 1510, 1835 |
| Hpy8I | GTNNAC | 9 cut(s) | 48, 72, 391, 880, 902, 1089, 1304, 1529, 2004 |
| HpyAV | CCTTC | 9 cut(s) | 179, 697, 744, 796, 834, 917, 1105, 1876, 2027 |
| HpyCH4III | ACNGT | 3 cut(s) | 634, 766, 1936 |
| HpyCH4IV | ACGT | 1 cut(s) | 211 |
| HpySE526I | ACGT | 1 cut(s) | 211 |
| Hsp92II | CATG | 7 cut(s) | 94, 443, 450, 534, 1268, 1645, 1975 |
| HspAI | GCGC | 1 cut(s) | 1138 |
| Kzo9I | GATC | 4 cut(s) | 166, 258, 1620, 1665 |
| LmnI | GCTCC | 4 cut(s) | 211, 864, 1465, 1736 |
| Lsp1109I | GCAGC | 9 cut(s) | 53, 64, 77, 391, 454, 1141, 1193, 1270, 1677 |
| LweI | GCATC | 1 cut(s) | 1339 |
| MaeI | CTAG | 6 cut(s) | 371, 627, 794, 1521, 1740, 1985 |
| MaeII | ACGT | 1 cut(s) | 211 |
| MaeIII | GTNAC | 4 cut(s) | 10, 1152, 1248, 1396 |
| MalI | GATC | 4 cut(s) | 168, 260, 1622, 1667 |
| MboI | GATC | 4 cut(s) | 166, 258, 1620, 1665 |
| MhlI | GDGCHC | 2 cut(s) | 208, 869 |
| MlyI | GAGTC | 3 cut(s) | 254, 1780, 1855 |
| MmeI | TCCRAC | 1 cut(s) | 1036 |
| MroXI | GAANNNNTTC | 1 cut(s) | 366 |
| MseI | TTAA | 9 cut(s) | 435, 525, 954, 1116, 1167, 1187, 1293, 1551, 1923 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1285 |
| MspA1I | CMGCKG | 3 cut(s) | 77, 650, 1132 |
| MspI | CCGG | 1 cut(s) | 572 |
| MspR9I | CCNGG | 3 cut(s) | 620, 981, 1734 |
| MvaI | CCWGG | 3 cut(s) | 620, 981, 1734 |
| NdeII | GATC | 4 cut(s) | 166, 258, 1620, 1665 |
| NheI | GCTAGC | 1 cut(s) | 1739 |
| NlaIII | CATG | 7 cut(s) | 94, 443, 450, 534, 1268, 1645, 1975 |
| NlaIV | GGNNCC | 5 cut(s) | 207, 1461, 1731, 1949, 1993 |
| NmuCI | GTSAC | 2 cut(s) | 1152, 1396 |
| NspI | RCATGY | 3 cut(s) | 443, 1645, 1975 |
| NspV | TTCGAA | 1 cut(s) | 2020 |
| OliI | CACNNNNGTG | 1 cut(s) | 1285 |
| PagI | TCATGA | 1 cut(s) | 1264 |
| PciI | ACATGT | 1 cut(s) | 1641 |
| PdmI | GAANNNNTTC | 1 cut(s) | 366 |
| PfeI | GAWTC | 2 cut(s) | 239, 1100 |
| PflFI | GACNNNGTC | 1 cut(s) | 1516 |
| Ple19I | CGATCG | 1 cut(s) | 169 |
| PleI | GAGTC | 3 cut(s) | 253, 1779, 1854 |
| PpsI | GAGTC | 3 cut(s) | 253, 1779, 1854 |
| Ppu21I | YACGTR | 1 cut(s) | 212 |
| PscI | ACATGT | 1 cut(s) | 1641 |
| PshBI | ATTAAT | 2 cut(s) | 1167, 1923 |
| PsiI | TTATAA | 3 cut(s) | 1025, 1314, 1404 |
| Psp6I | CCWGG | 3 cut(s) | 618, 979, 1732 |
| PspGI | CCWGG | 3 cut(s) | 618, 979, 1732 |
| PspN4I | GGNNCC | 5 cut(s) | 207, 1461, 1731, 1949, 1993 |
| PspPI | GGNCC | 5 cut(s) | 106, 977, 1301, 1545, 1917 |
| PstI | CTGCAG | 2 cut(s) | 472, 915 |
| PstNI | CAGNNNCTG | 2 cut(s) | 242, 638 |
| PsyI | GACNNNGTC | 1 cut(s) | 1516 |
| PvuI | CGATCG | 1 cut(s) | 169 |
| RsaI | GTAC | 2 cut(s) | 463, 1943 |
| RsaNI | GTAC | 2 cut(s) | 462, 1942 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1285 |
| SaqAI | TTAA | 9 cut(s) | 435, 525, 954, 1116, 1167, 1187, 1293, 1551, 1923 |
| Sau3AI | GATC | 4 cut(s) | 166, 258, 1620, 1665 |
| Sau96I | GGNCC | 5 cut(s) | 106, 977, 1301, 1545, 1917 |
| ScaI | AGTACT | 1 cut(s) | 463 |
| SchI | GAGTC | 3 cut(s) | 254, 1780, 1855 |
| ScrFI | CCNGG | 3 cut(s) | 620, 981, 1734 |
| SduI | GDGCHC | 2 cut(s) | 208, 869 |
| SfaNI | GCATC | 1 cut(s) | 1339 |
| SfcI | CTRYAG | 3 cut(s) | 468, 911, 1599 |
| SfuI | TTCGAA | 1 cut(s) | 2020 |
| SinI | GGWCC | 3 cut(s) | 106, 977, 1301 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1285 |
| SmlI | CTYRAG | 2 cut(s) | 276, 1532 |
| SmoI | CTYRAG | 2 cut(s) | 276, 1532 |
| SsiI | CCGC | 5 cut(s) | 75, 648, 1132, 1135, 1897 |
| SspI | AATATT | 2 cut(s) | 1120, 1144 |
| SspMI | CTAG | 6 cut(s) | 371, 627, 794, 1521, 1740, 1985 |
| StyD4I | CCNGG | 3 cut(s) | 618, 979, 1732 |
| StyI | CCWWGG | 3 cut(s) | 1376, 1626, 1776 |
| TaaI | ACNGT | 3 cut(s) | 634, 766, 1936 |
| TaiI | ACGT | 1 cut(s) | 214 |
| TaqI | TCGA | 5 cut(s) | 27, 499, 712, 1834, 2020 |
| TatI | WGTACW | 2 cut(s) | 461, 1941 |
| TauI | GCSGC | 2 cut(s) | 1135, 1138 |
| TfiI | GAWTC | 2 cut(s) | 239, 1100 |
| Tru1I | TTAA | 9 cut(s) | 435, 525, 954, 1116, 1167, 1187, 1293, 1551, 1923 |
| Tru9I | TTAA | 9 cut(s) | 435, 525, 954, 1116, 1167, 1187, 1293, 1551, 1923 |
| TscAI | CASTG | 6 cut(s) | 639, 727, 915, 979, 1531, 1581 |
| TseFI | GTSAC | 2 cut(s) | 1152, 1396 |
| TseI | GCWGC | 9 cut(s) | 41, 65, 77, 379, 467, 1129, 1206, 1258, 1690 |
| Tsp45I | GTSAC | 2 cut(s) | 1152, 1396 |
| TspDTI | ATGAA | 7 cut(s) | 107, 218, 557, 693, 758, 1335, 1819 |
| TspGWI | ACGGA | 1 cut(s) | 1106 |
| TspRI | CASTG | 6 cut(s) | 639, 727, 915, 979, 1531, 1581 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1516 |
| VpaK11BI | GGWCC | 3 cut(s) | 106, 977, 1301 |
| VspI | ATTAAT | 2 cut(s) | 1167, 1923 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 954 |
| XapI | RAATTY | 5 cut(s) | 123, 315, 345, 1213, 1652 |
| XbaI | TCTAGA | 1 cut(s) | 370 |
| XceI | RCATGY | 3 cut(s) | 443, 1645, 1975 |
| XmnI | GAANNNNTTC | 1 cut(s) | 366 |
| XspI | CTAG | 6 cut(s) | 371, 627, 794, 1521, 1740, 1985 |
| ZrmI | AGTACT | 1 cut(s) | 463 |