Rmu_sc0004488.1_g000002
ERF Family

DNA RNA polymerases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004488.1
OG0000291
Physical Location & Seq
Reverse (-)
10016 .. 10772
757 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004488.1_g000002.1.cds

Sequence Viewer

Length: 594 bp
atggctcctgtgtgtcgatttgagaaatctagtggacagaaaggggagagttttctgaccttatctagtagtgaatttgagatggaggaggcctttaaagactctgaagttttctgcccagtggtgataaagtggttgttggctgcagaaaaagaagatgcggtgattcctaaggaagtgcagcatatgttgggagagtttgaagagttgatttcggatgagttgcccaacgaactaccacctatgagggacattcaacatcagattgatttggttcctggagctagtttggagatggaggttggaggttggagatggagggattgctgctggcaggacgtcccatggggtgtcgaaggggctggcggtgctggaagtggcggaagcgacaacggtggagggcttgggatcgacggctactgcaagtgcagctcggagttgcaaattggtgggttaggcctcaatgctgatggtgcagacatggagggatatgctattaggcctgtttctgttgagaaacattcaaaggcagctttgggtgtgaagaggaagcaattcaagccaagtttacctattatacctcgggagttttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 Retrotrans_gag rve zf-H2C2

Protein Analysis

197

Amino Acids

21.43

Weight (kDa)

4.63

Isoelectric Point (pI)

40.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000291)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00860
fragaria_vesca FvH4_1g23712 FvH4_1g29809 FvH4_1g29810 FvH4_2g02661 FvH4_2g13451 FvH4_2g17921 FvH4_2g17922 FvH4_2g19251 FvH4_2g19252 FvH4_2g28221 FvH4_2g35961 FvH4_3g10372 FvH4_3g12461 FvH4_3g12461 FvH4_3g27861 FvH4_3g34591 FvH4_3g40201 FvH4_3g44612 FvH4_4g08352 FvH4_4g12251 FvH4_4g12742 FvH4_4g13904 FvH4_4g14287 FvH4_4g15243 FvH4_4g24071 FvH4_4g33448 FvH4_5g21912 FvH4_5g39371 FvH4_6g14992 FvH4_6g15221 FvH4_6g20603 FvH4_6g31093 FvH4_6g32372 FvH4_6g33012
malus_domestica MD11G1009100.v1.1 MD13G1145000.v1.1 MD16G1138700.v1.1
prunus_persica Prupe.5G246300_v2.0.a1 Prupe.7G034800_v2.0.a1 Prupe.8G084500_v2.0.a1
pyrus_communis pycom01g18240 pycom04g00330 pycom05g09010 pycom06g01670 pycom06g01690 pycom06g07180 pycom06g11620 pycom10g05720 pycom1134g00040 pycom1134g00060 pycom12486g00010 pycom12555g00230 pycom13g21670 pycom13g23130 pycom13g23140 pycom14g10580
rosa_chinensis RchiOBHm_Chr1g0330691 RchiOBHm_Chr2g0106171 RchiOBHm_Chr2g0134731 RchiOBHm_Chr2g0142791 RchiOBHm_Chr2g0149861 RchiOBHm_Chr3g0452401 RchiOBHm_Chr3g0461881 RchiOBHm_Chr4g0401341 RchiOBHm_Chr5g0075641 RchiOBHm_Chr6g0265961 RchiOBHm_Chr7g0200201 RchiOBHm_Chr7g0237811
rosa_laevigata RLG00000002773
rosa_multiflora Rmu_co8037806.1_g000001 Rmu_co8445989.1_g000001 Rmu_sc0000745.1_g000039 Rmu_sc0004448.1_g000029 Rmu_sc0004488.1_g000002 Rmu_sc0004591.1_g000018 Rmu_sc0005065.1_g000030 Rmu_sc0005150.1_g000005 Rmu_sc0005654.1_g000011 Rmu_sc0006986.1_g000016
rosa_roxburghii Rroxscaffold_164G00436490 Rroxscaffold_175G00432490 Rroxscaffold_1G00059440 Rroxscaffold_1G00064410 Rroxscaffold_2G00100310 Rroxscaffold_2G00128170 Rroxscaffold_3G00239420 Rroxscaffold_3G00264970 Rroxscaffold_3G00271550 Rroxscaffold_4G00300240 Rroxscaffold_5G00385050 Rroxscaffold_6G00399720
rosa_rugosa Rorug02G0252200
rosa_samantha Rh2DG251900 Rh7CG329900
rosa_wichuraiana Rw0G004800 Rw1G000850 Rw1G022350 Rw2G027030 Rw2G027760 Rw2G028410 Rw2G029130 Rw2G029390 Rw2G032490 Rw2G039460 Rw2G047800 Rw2G050340 Rw3G026430 Rw4G018370 Rw4G030750 Rw4G033140 Rw5G011950 Rw5G012010 Rw5G029280 Rw5G040190 Rw5G044570 Rw5G048240 Rw6G000340 Rw6G010140 Rw6G026480 Rw7G033750 Rw7G037250 Rw7G042080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 342
AciI CCGC 3 cut(s) 161, 366, 381
AclWI GGATC 1 cut(s) 416
AcsI RAATTY 1 cut(s) 74
AcuI CTGAAG 1 cut(s) 126
AcyI GRCGYC 1 cut(s) 339
AgsI TTSAA 4 cut(s) 203, 257, 525, 559
AjnI CCWGG 1 cut(s) 277
AluBI AGCT 3 cut(s) 284, 432, 533
AluI AGCT 3 cut(s) 284, 432, 533
AlwI GGATC 1 cut(s) 416
Ama87I CYCGRG 1 cut(s) 582
AoxI GGCC 3 cut(s) 90, 457, 500
ApeKI GCWGC 5 cut(s) 143, 181, 327, 429, 530
ApoI RAATTY 1 cut(s) 74
Asp700I GAANNNNTTC 1 cut(s) 554
AsuHPI GGTGA 2 cut(s) 136, 175
AvaI CYCGRG 1 cut(s) 582
AxyI CCTNAGG 1 cut(s) 171
BbvI GCAGC 5 cut(s) 130, 193, 314, 441, 542
BccI CCATC 4 cut(s) 76, 289, 309, 464
BceAI ACGGC 1 cut(s) 430
BciT130I CCWGG 1 cut(s) 279
BfaI CTAG 3 cut(s) 30, 66, 285
BfmI CTRYAG 1 cut(s) 144
BisI GCNGC 5 cut(s) 144, 182, 328, 430, 531
BlsI GCNGC 5 cut(s) 145, 183, 329, 431, 532
Bme1390I CCNGG 1 cut(s) 279
BmeT110I CYCGRG 1 cut(s) 582
BmiI GGNNCC 2 cut(s) 6, 276
BmrFI CCNGG 1 cut(s) 279
BmrI ACTGGG 1 cut(s) 113
BmsI GCATC 1 cut(s) 148
BmuI ACTGGG 1 cut(s) 113
BpmI CTGGAG 1 cut(s) 300
BsaHI GRCGYC 1 cut(s) 339
BsaJI CCNNGG 2 cut(s) 344, 581
Bse1I ACTGG 1 cut(s) 119
Bse21I CCTNAGG 1 cut(s) 171
BseBI CCWGG 1 cut(s) 279
BseDI CCNNGG 2 cut(s) 344, 581
BseGI GGATG 1 cut(s) 223
BseNI ACTGG 1 cut(s) 119
BseRI GAGGAG 1 cut(s) 101
BseXI GCAGC 5 cut(s) 130, 193, 314, 441, 542
BsgI GTGCAG 3 cut(s) 200, 448, 495
BshFI GGCC 3 cut(s) 92, 459, 502
BsiHKCI CYCGRG 1 cut(s) 582
BslFI GGGAC 2 cut(s) 263, 326
BsmFI GGGAC 2 cut(s) 263, 326
BsnI GGCC 3 cut(s) 92, 459, 502
BsoBI CYCGRG 1 cut(s) 582
Bsp143I GATC 1 cut(s) 408
Bsp19I CCATGG 1 cut(s) 344
BspACI CCGC 3 cut(s) 161, 366, 381
BspANI GGCC 3 cut(s) 92, 459, 502
BspLI GGNNCC 2 cut(s) 6, 276
BspMAI CTGCAG 1 cut(s) 148
BspPI GGATC 1 cut(s) 416
BsrI ACTGG 1 cut(s) 119
BssECI CCNNGG 2 cut(s) 344, 581
BssMI GATC 1 cut(s) 408
BssNI GRCGYC 1 cut(s) 339
BssT1I CCWWGG 1 cut(s) 344
Bst2UI CCWGG 1 cut(s) 279
Bst4CI ACNGT 1 cut(s) 395
Bst6I CTCTTC 2 cut(s) 198, 539
BstACI GRCGYC 1 cut(s) 339
BstC8I GCNNGC 2 cut(s) 332, 364
BstDEI CTNAG 1 cut(s) 171
BstDSI CCRYGG 1 cut(s) 344
BstF5I GGATG 1 cut(s) 223
BstKTI GATC 1 cut(s) 411
BstMBI GATC 1 cut(s) 408
BstMWI GCNNNNNNNGC 4 cut(s) 368, 429, 473, 559
BstNI CCWGG 1 cut(s) 279
BstSCI CCNGG 1 cut(s) 277
BstSFI CTRYAG 1 cut(s) 144
BstV1I GCAGC 5 cut(s) 130, 193, 314, 441, 542
Bsu36I CCTNAGG 1 cut(s) 171
BsuRI GGCC 3 cut(s) 92, 459, 502
BtgI CCRYGG 1 cut(s) 344
BtsCI GGATG 1 cut(s) 223
BtsIMutI CAGTG 1 cut(s) 126
Cac8I GCNNGC 2 cut(s) 332, 364
CviAII CATG 2 cut(s) 345, 481
DdeI CTNAG 1 cut(s) 171
DpnI GATC 1 cut(s) 410
DpnII GATC 1 cut(s) 408
DraI TTTAAA 1 cut(s) 97
Eam1104I CTCTTC 2 cut(s) 198, 539
EarI CTCTTC 2 cut(s) 198, 539
EciI GGCGGA 1 cut(s) 396
Eco130I CCWWGG 1 cut(s) 344
Eco147I AGGCCT 3 cut(s) 92, 459, 502
Eco57I CTGAAG 1 cut(s) 126
Eco81I CCTNAGG 1 cut(s) 171
Eco88I CYCGRG 1 cut(s) 582
EcoRII CCWGG 1 cut(s) 277
EcoT14I CCWWGG 1 cut(s) 344
ErhI CCWWGG 1 cut(s) 344
FaeI CATG 2 cut(s) 348, 484
FaiI YATR 7 cut(s) 186, 188, 245, 346, 482, 492, 578
FaqI GGGAC 2 cut(s) 263, 326
FatI CATG 2 cut(s) 344, 480
FauNDI CATATG 1 cut(s) 186
Fnu4HI GCNGC 5 cut(s) 144, 182, 328, 430, 531
FokI GGATG 1 cut(s) 230
Fsp4HI GCNGC 5 cut(s) 144, 182, 328, 430, 531
FspBI CTAG 3 cut(s) 30, 66, 285
GluI GCNGC 5 cut(s) 144, 182, 328, 430, 531
GsuI CTGGAG 1 cut(s) 300
HaeIII GGCC 3 cut(s) 92, 459, 502
Hin1I GRCGYC 1 cut(s) 339
Hin1II CATG 2 cut(s) 348, 484
HinfI GANTC 2 cut(s) 101, 166
HphI GGTGA 2 cut(s) 136, 175
Hpy166II GTNNAC 2 cut(s) 35, 569
Hpy188I TCNGA 5 cut(s) 57, 106, 217, 264, 436
Hpy188III TCNNGA 1 cut(s) 584
Hpy8I GTNNAC 2 cut(s) 35, 569
Hpy99I CGWCG 1 cut(s) 416
HpyAV CCTTC 1 cut(s) 350
HpyCH4III ACNGT 1 cut(s) 395
HpyCH4IV ACGT 1 cut(s) 339
HpyCH4V TGCA 6 cut(s) 146, 181, 423, 429, 442, 476
HpyF10VI GCNNNNNNNGC 4 cut(s) 368, 429, 473, 559
HpyF3I CTNAG 1 cut(s) 171
HpySE526I ACGT 1 cut(s) 339
Hsp92I GRCGYC 1 cut(s) 339
Hsp92II CATG 2 cut(s) 348, 484
Kzo9I GATC 1 cut(s) 408
LmnI GCTCC 2 cut(s) 10, 281
LpnPI CCDG 9 cut(s) 21, 132, 264, 291, 316, 320, 348, 357, 516
Lsp1109I GCAGC 5 cut(s) 130, 193, 314, 441, 542
LweI GCATC 1 cut(s) 148
MaeI CTAG 3 cut(s) 30, 66, 285
MaeII ACGT 1 cut(s) 339
MalI GATC 1 cut(s) 410
MboI GATC 1 cut(s) 408
MboII GAAGA 3 cut(s) 167, 215, 556
MluCI AATT 3 cut(s) 74, 444, 554
MlyI GAGTC 1 cut(s) 95
MmeI TCCRAC 2 cut(s) 283, 290
MroXI GAANNNNTTC 1 cut(s) 554
MseI TTAA 1 cut(s) 96
MspR9I CCNGG 1 cut(s) 279
MvaI CCWGG 1 cut(s) 279
MwoI GCNNNNNNNGC 4 cut(s) 368, 429, 473, 559
NcoI CCATGG 1 cut(s) 344
NdeI CATATG 1 cut(s) 186
NdeII GATC 1 cut(s) 408
NlaIII CATG 2 cut(s) 348, 484
NlaIV GGNNCC 2 cut(s) 6, 276
PceI AGGCCT 3 cut(s) 92, 459, 502
PdmI GAANNNNTTC 1 cut(s) 554
PfeI GAWTC 1 cut(s) 166
PfoI TCCNGGA 1 cut(s) 277
PkrI GCNGC 5 cut(s) 145, 183, 329, 431, 532
PleI GAGTC 1 cut(s) 95
PpsI GAGTC 1 cut(s) 95
Psp6I CCWGG 1 cut(s) 277
PspGI CCWGG 1 cut(s) 277
PspN4I GGNNCC 2 cut(s) 6, 276
PstI CTGCAG 1 cut(s) 148
SaqAI TTAA 1 cut(s) 96
SatI GCNGC 5 cut(s) 144, 182, 328, 430, 531
Sau3AI GATC 1 cut(s) 408
SchI GAGTC 1 cut(s) 95
ScrFI CCNGG 1 cut(s) 279
SfaNI GCATC 1 cut(s) 148
SfcI CTRYAG 1 cut(s) 144
Sse9I AATT 3 cut(s) 74, 444, 554
SseBI AGGCCT 3 cut(s) 92, 459, 502
SsiI CCGC 3 cut(s) 161, 366, 381
SspMI CTAG 3 cut(s) 30, 66, 285
StuI AGGCCT 3 cut(s) 92, 459, 502
StyD4I CCNGG 1 cut(s) 277
StyI CCWWGG 1 cut(s) 344
TaaI ACNGT 1 cut(s) 395
TaiI ACGT 1 cut(s) 342
TaqI TCGA 3 cut(s) 16, 354, 411
TasI AATT 3 cut(s) 74, 444, 554
TfiI GAWTC 1 cut(s) 166
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TscAI CASTG 1 cut(s) 126
TseI GCWGC 5 cut(s) 143, 181, 327, 429, 530
TspRI CASTG 1 cut(s) 126
XapI RAATTY 1 cut(s) 74
XmnI GAANNNNTTC 1 cut(s) 554
XspI CTAG 3 cut(s) 30, 66, 285
ZraI GACGTC 1 cut(s) 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.