Rroxscaffold_5G00385050

Retroviral aspartyl protease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000291
Physical Location & Seq
Forward (+)
64210271 .. 64216998
6728 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00385050.1

Sequence Viewer

Length: 471 bp
ATGGAGCCAAAAAAGACCCAAATTTCTGCTCGTACAGAAACAACAAATCACACTCCACCTGTTCGACAAATGTCCCCTATCGAGTTGCAAGAGAGACGAGCAAAAGGATTGTGCTACAACTGTAATGAGAGGTTTGTCCCTGGACATAGATGCAAAAAACTTTTCTTAATTGATGCTATTACTGAAGAAGAAGATGGAGATGTTATGATGGATGAAGGAGAAGCTGTGTTTGAAGACACCAATGCTCTGCCAGAAATTTCTCTACATGCTATTTCAGGCTCTAGTGCAGCAGATACTGTGCGGGTGAAGGGAAGCATTGGGCATACTACAACTACTATTCTAGTAGATTCGGGTAGTACTCATAATTTCATGAATGAGAACCTTGCTAAACAAATGGGACTACAACCTAAAAACTCAAGAAAGTTTCAAGTTATGGTAGCTCCAGGTGAAAAGGTTGTCTGGTCAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag

Protein Analysis

156

Amino Acids

17.34

Weight (kDa)

6.21

Isoelectric Point (pI)

46.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
gag-asp_proteas PF13975 102 - 153 3.6e-07 gag-polyprotein putative aspartyl protease
Asp_protease_2 PF13650 102 - 152 4.3e-06 Aspartyl protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000291)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00860
fragaria_vesca FvH4_1g23712 FvH4_1g29809 FvH4_1g29810 FvH4_2g02661 FvH4_2g13451 FvH4_2g17921 FvH4_2g17922 FvH4_2g19251 FvH4_2g19252 FvH4_2g28221 FvH4_2g35961 FvH4_3g10372 FvH4_3g12461 FvH4_3g12461 FvH4_3g27861 FvH4_3g34591 FvH4_3g40201 FvH4_3g44612 FvH4_4g08352 FvH4_4g12251 FvH4_4g12742 FvH4_4g13904 FvH4_4g14287 FvH4_4g15243 FvH4_4g24071 FvH4_4g33448 FvH4_5g21912 FvH4_5g39371 FvH4_6g14992 FvH4_6g15221 FvH4_6g20603 FvH4_6g31093 FvH4_6g32372 FvH4_6g33012
malus_domestica MD11G1009100.v1.1 MD13G1145000.v1.1 MD16G1138700.v1.1
prunus_persica Prupe.5G246300_v2.0.a1 Prupe.7G034800_v2.0.a1 Prupe.8G084500_v2.0.a1
pyrus_communis pycom01g18240 pycom04g00330 pycom05g09010 pycom06g01670 pycom06g01690 pycom06g07180 pycom06g11620 pycom10g05720 pycom1134g00040 pycom1134g00060 pycom12486g00010 pycom12555g00230 pycom13g21670 pycom13g23130 pycom13g23140 pycom14g10580
rosa_chinensis RchiOBHm_Chr1g0330691 RchiOBHm_Chr2g0106171 RchiOBHm_Chr2g0134731 RchiOBHm_Chr2g0142791 RchiOBHm_Chr2g0149861 RchiOBHm_Chr3g0452401 RchiOBHm_Chr3g0461881 RchiOBHm_Chr4g0401341 RchiOBHm_Chr5g0075641 RchiOBHm_Chr6g0265961 RchiOBHm_Chr7g0200201 RchiOBHm_Chr7g0237811
rosa_laevigata RLG00000002773
rosa_multiflora Rmu_co8037806.1_g000001 Rmu_co8445989.1_g000001 Rmu_sc0000745.1_g000039 Rmu_sc0004448.1_g000029 Rmu_sc0004488.1_g000002 Rmu_sc0004591.1_g000018 Rmu_sc0005065.1_g000030 Rmu_sc0005150.1_g000005 Rmu_sc0005654.1_g000011 Rmu_sc0006986.1_g000016
rosa_roxburghii Rroxscaffold_164G00436490 Rroxscaffold_175G00432490 Rroxscaffold_1G00059440 Rroxscaffold_1G00064410 Rroxscaffold_2G00100310 Rroxscaffold_2G00128170 Rroxscaffold_3G00239420 Rroxscaffold_3G00264970 Rroxscaffold_3G00271550 Rroxscaffold_4G00300240 Rroxscaffold_5G00385050 Rroxscaffold_6G00399720
rosa_rugosa Rorug02G0252200
rosa_samantha Rh2DG251900 Rh7CG329900
rosa_wichuraiana Rw0G004800 Rw1G000850 Rw1G022350 Rw2G027030 Rw2G027760 Rw2G028410 Rw2G029130 Rw2G029390 Rw2G032490 Rw2G039460 Rw2G047800 Rw2G050340 Rw3G026430 Rw4G018370 Rw4G030750 Rw4G033140 Rw5G011950 Rw5G012010 Rw5G029280 Rw5G040190 Rw5G044570 Rw5G048240 Rw6G000340 Rw6G010140 Rw6G026480 Rw7G033750 Rw7G037250 Rw7G042080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 301
AcsI RAATTY 2 cut(s) 21, 255
AcuI CTGAAG 1 cut(s) 204
AfaI GTAC 2 cut(s) 34, 358
AgsI TTSAA 2 cut(s) 233, 428
AjnI CCWGG 2 cut(s) 139, 442
AluBI AGCT 2 cut(s) 224, 440
AluI AGCT 2 cut(s) 224, 440
Alw26I GTCTC 1 cut(s) 88
AlwNI CAGNNNCTG 1 cut(s) 296
ApeKI GCWGC 1 cut(s) 287
ApoI RAATTY 2 cut(s) 21, 255
AsuHPI GGTGA 2 cut(s) 316, 458
BbsI GAAGAC 1 cut(s) 240
BbvI GCAGC 1 cut(s) 299
BccI CCATC 2 cut(s) 188, 202
BciT130I CCWGG 2 cut(s) 141, 444
BcoDI GTCTC 1 cut(s) 88
BfaI CTAG 2 cut(s) 282, 341
BisI GCNGC 1 cut(s) 288
BlsI GCNGC 1 cut(s) 289
BmcAI AGTACT 1 cut(s) 358
Bme1390I CCNGG 2 cut(s) 141, 444
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 2 cut(s) 141, 444
BmsI GCATC 2 cut(s) 140, 163
BoxI GACNNNNGTC 1 cut(s) 70
BpiI GAAGAC 1 cut(s) 240
BpmI CTGGAG 1 cut(s) 426
BpuEI CTTGAG 1 cut(s) 400
BsaJI CCNNGG 1 cut(s) 139
BsaXI ACNNNNNCTCC 2 cut(s) 210, 240
BseBI CCWGG 2 cut(s) 141, 444
BseDI CCNNGG 1 cut(s) 139
BseGI GGATG 1 cut(s) 217
BseXI GCAGC 1 cut(s) 299
BsgI GTGCAG 1 cut(s) 306
BslFI GGGAC 3 cut(s) 58, 122, 411
BsmAI GTCTC 1 cut(s) 88
BsmBI CGTCTC 1 cut(s) 88
BsmFI GGGAC 3 cut(s) 58, 122, 411
BspACI CCGC 1 cut(s) 301
BspHI TCATGA 1 cut(s) 369
BspLI GGNNCC 1 cut(s) 6
BssECI CCNNGG 1 cut(s) 139
Bst2UI CCWGG 2 cut(s) 141, 444
Bst4CI ACNGT 2 cut(s) 122, 298
BstF5I GGATG 1 cut(s) 217
BstMAI GTCTC 1 cut(s) 88
BstNI CCWGG 2 cut(s) 141, 444
BstNSI RCATGY 1 cut(s) 269
BstPAI GACNNNNGTC 1 cut(s) 70
BstSCI CCNGG 2 cut(s) 139, 442
BstV1I GCAGC 1 cut(s) 299
BstV2I GAAGAC 1 cut(s) 240
BtsCI GGATG 1 cut(s) 217
CaiI CAGNNNCTG 1 cut(s) 296
CciI TCATGA 1 cut(s) 369
Csp6I GTAC 2 cut(s) 33, 357
CviAII CATG 2 cut(s) 266, 370
CviJI RGCY 4 cut(s) 7, 224, 279, 440
CviKI_1 RGCY 4 cut(s) 7, 224, 279, 440
CviQI GTAC 2 cut(s) 33, 357
Eco57I CTGAAG 1 cut(s) 204
EcoRII CCWGG 2 cut(s) 139, 442
Esp3I CGTCTC 1 cut(s) 88
FaeI CATG 2 cut(s) 269, 373
FaiI YATR 7 cut(s) 147, 206, 267, 324, 363, 371, 434
FaqI GGGAC 3 cut(s) 58, 122, 411
FatI CATG 2 cut(s) 265, 369
FauI CCCGC 1 cut(s) 294
Fnu4HI GCNGC 1 cut(s) 288
FokI GGATG 1 cut(s) 224
Fsp4HI GCNGC 1 cut(s) 288
FspBI CTAG 2 cut(s) 282, 341
GluI GCNGC 1 cut(s) 288
GsuI CTGGAG 1 cut(s) 426
Hin1II CATG 2 cut(s) 269, 373
HinfI GANTC 1 cut(s) 347
HphI GGTGA 2 cut(s) 316, 458
Hpy188III TCNNGA 2 cut(s) 370, 417
HpyAV CCTTC 2 cut(s) 209, 301
HpyCH4III ACNGT 2 cut(s) 122, 298
HpyCH4V TGCA 3 cut(s) 88, 153, 287
Hsp92II CATG 2 cut(s) 269, 373
LmnI GCTCC 2 cut(s) 4, 445
LpnPI CCDG 8 cut(s) 72, 126, 153, 261, 264, 429, 445, 456
Lsp1109I GCAGC 1 cut(s) 299
LweI GCATC 2 cut(s) 140, 163
MaeI CTAG 2 cut(s) 282, 341
MboII GAAGA 4 cut(s) 197, 200, 203, 245
MluCI AATT 4 cut(s) 21, 168, 255, 364
MnlI CCTC 1 cut(s) 123
MseI TTAA 1 cut(s) 167
MspR9I CCNGG 2 cut(s) 141, 444
MvaI CCWGG 2 cut(s) 141, 444
NlaIII CATG 2 cut(s) 269, 373
NlaIV GGNNCC 1 cut(s) 6
NspI RCATGY 1 cut(s) 269
PagI TCATGA 1 cut(s) 369
PfeI GAWTC 1 cut(s) 347
PkrI GCNGC 1 cut(s) 289
PshAI GACNNNNGTC 1 cut(s) 70
Psp6I CCWGG 2 cut(s) 139, 442
PspGI CCWGG 2 cut(s) 139, 442
PspN4I GGNNCC 1 cut(s) 6
PstNI CAGNNNCTG 1 cut(s) 296
RsaI GTAC 2 cut(s) 34, 358
RsaNI GTAC 2 cut(s) 33, 357
SaqAI TTAA 1 cut(s) 167
SatI GCNGC 1 cut(s) 288
ScaI AGTACT 1 cut(s) 358
ScrFI CCNGG 2 cut(s) 141, 444
SetI ASST 9 cut(s) 61, 134, 226, 384, 409, 442, 448, 456, 470
SfaNI GCATC 2 cut(s) 140, 163
SmlI CTYRAG 1 cut(s) 415
SmoI CTYRAG 1 cut(s) 415
Sse9I AATT 4 cut(s) 21, 168, 255, 364
SsiI CCGC 1 cut(s) 301
SspMI CTAG 2 cut(s) 282, 341
StyD4I CCNGG 2 cut(s) 139, 442
TaaI ACNGT 2 cut(s) 122, 298
TaqI TCGA 2 cut(s) 64, 81
TasI AATT 4 cut(s) 21, 168, 255, 364
TatI WGTACW 1 cut(s) 356
TfiI GAWTC 1 cut(s) 347
Tru1I TTAA 1 cut(s) 167
Tru9I TTAA 1 cut(s) 167
TseI GCWGC 1 cut(s) 287
TspDTI ATGAA 3 cut(s) 228, 358, 386
XapI RAATTY 2 cut(s) 21, 255
XceI RCATGY 1 cut(s) 269
XspI CTAG 2 cut(s) 282, 341
ZrmI AGTACT 1 cut(s) 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.