Rmu_sc0000745.1_g000039

Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000745.1
OG0000291
Physical Location & Seq
Forward (+)
142263 .. 143621
1359 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000745.1_g000039.1.cds

Sequence Viewer

Length: 687 bp
atgtatgctgatggcattaactgggatgatcttgggtttggactgattccaatcgattacatgtgcaccatgaaatggtccgacggagaaaatttttctcaaggacatctctctccctttggaaagattgagctttgcccatctgctggaatattgaattatggacagaatcctttgcttaggtttattgctggtaaacctagttatcaatccgtctgcgtcaggtggtatcagagcaggtcttccctgtctctcctatttaccttggtagcaatgggtgaagttatgaaatcagatatcgaagctctcacagcagtgtttaccgctgccatcaacaccatgaacaatcgaatggaccagcagattggagaaattcatgggttgttgggagagagaaacaaccacaacaacaacgatcggaatagaggcagggaaggaggccagcgagttaaggctccacgtagagaggttgttgttcatacttcagaatctgagtctgaagaagaaattttgcaacatgaacaacatggacaagctgaccaggattacaaagtcaaggccgaaattcctttcttttctggcaacttgggtgtagaagattttctggataggttgaagtggatagattctttgagatcatggagattccaaaacacaagcaggctaagatggtttctcggaagctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 ko00280 ko00290 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00270 map00280 map00290 map00770 map01100 map01110 map01130 map01210 map01230
Pfam Domains
Protein Families
Aminotran_4

Protein Analysis

228

Amino Acids

26.02

Weight (kDa)

5.7

Isoelectric Point (pI)

56.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000291)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00860
fragaria_vesca FvH4_1g23712 FvH4_1g29809 FvH4_1g29810 FvH4_2g02661 FvH4_2g13451 FvH4_2g17921 FvH4_2g17922 FvH4_2g19251 FvH4_2g19252 FvH4_2g28221 FvH4_2g35961 FvH4_3g10372 FvH4_3g12461 FvH4_3g12461 FvH4_3g27861 FvH4_3g34591 FvH4_3g40201 FvH4_3g44612 FvH4_4g08352 FvH4_4g12251 FvH4_4g12742 FvH4_4g13904 FvH4_4g14287 FvH4_4g15243 FvH4_4g24071 FvH4_4g33448 FvH4_5g21912 FvH4_5g39371 FvH4_6g14992 FvH4_6g15221 FvH4_6g20603 FvH4_6g31093 FvH4_6g32372 FvH4_6g33012
malus_domestica MD11G1009100.v1.1 MD13G1145000.v1.1 MD16G1138700.v1.1
prunus_persica Prupe.5G246300_v2.0.a1 Prupe.7G034800_v2.0.a1 Prupe.8G084500_v2.0.a1
pyrus_communis pycom01g18240 pycom04g00330 pycom05g09010 pycom06g01670 pycom06g01690 pycom06g07180 pycom06g11620 pycom10g05720 pycom1134g00040 pycom1134g00060 pycom12486g00010 pycom12555g00230 pycom13g21670 pycom13g23130 pycom13g23140 pycom14g10580
rosa_chinensis RchiOBHm_Chr1g0330691 RchiOBHm_Chr2g0106171 RchiOBHm_Chr2g0134731 RchiOBHm_Chr2g0142791 RchiOBHm_Chr2g0149861 RchiOBHm_Chr3g0452401 RchiOBHm_Chr3g0461881 RchiOBHm_Chr4g0401341 RchiOBHm_Chr5g0075641 RchiOBHm_Chr6g0265961 RchiOBHm_Chr7g0200201 RchiOBHm_Chr7g0237811
rosa_laevigata RLG00000002773
rosa_multiflora Rmu_co8037806.1_g000001 Rmu_co8445989.1_g000001 Rmu_sc0000745.1_g000039 Rmu_sc0004448.1_g000029 Rmu_sc0004488.1_g000002 Rmu_sc0004591.1_g000018 Rmu_sc0005065.1_g000030 Rmu_sc0005150.1_g000005 Rmu_sc0005654.1_g000011 Rmu_sc0006986.1_g000016
rosa_roxburghii Rroxscaffold_164G00436490 Rroxscaffold_175G00432490 Rroxscaffold_1G00059440 Rroxscaffold_1G00064410 Rroxscaffold_2G00100310 Rroxscaffold_2G00128170 Rroxscaffold_3G00239420 Rroxscaffold_3G00264970 Rroxscaffold_3G00271550 Rroxscaffold_4G00300240 Rroxscaffold_5G00385050 Rroxscaffold_6G00399720
rosa_rugosa Rorug02G0252200
rosa_samantha Rh2DG251900 Rh7CG329900
rosa_wichuraiana Rw0G004800 Rw1G000850 Rw1G022350 Rw2G027030 Rw2G027760 Rw2G028410 Rw2G029130 Rw2G029390 Rw2G032490 Rw2G039460 Rw2G047800 Rw2G050340 Rw3G026430 Rw4G018370 Rw4G030750 Rw4G033140 Rw5G011950 Rw5G012010 Rw5G029280 Rw5G040190 Rw5G044570 Rw5G048240 Rw6G000340 Rw6G010140 Rw6G026480 Rw7G033750 Rw7G037250 Rw7G042080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 228
AccB7I CCANNNNNTGG 2 cut(s) 75, 146
AciI CCGC 1 cut(s) 324
AcsI RAATTY 4 cut(s) 91, 372, 507, 564
AcuI CTGAAG 2 cut(s) 468, 519
AfiI CCNNNNNNNGG 2 cut(s) 75, 146
AflIII ACRYGT 1 cut(s) 60
AgsI TTSAA 2 cut(s) 157, 616
AjnI CCWGG 1 cut(s) 540
AleI CACNNNNGTG 1 cut(s) 314
AluBI AGCT 4 cut(s) 133, 305, 536, 684
AluI AGCT 4 cut(s) 133, 305, 536, 684
Alw21I GWGCWC 1 cut(s) 68
Alw26I GTCTC 1 cut(s) 255
Alw44I GTGCAC 1 cut(s) 64
AlwNI CAGNNNCTG 1 cut(s) 491
AoxI GGCC 2 cut(s) 439, 558
ApaLI GTGCAC 1 cut(s) 64
ApeKI GCWGC 1 cut(s) 326
ApoI RAATTY 4 cut(s) 91, 372, 507, 564
Asp700I GAANNNNTTC 1 cut(s) 600
AspS9I GGNCC 2 cut(s) 78, 355
AsuHPI GGTGA 1 cut(s) 290
AvaII GGWCC 2 cut(s) 78, 355
BaeGI GKGCMC 1 cut(s) 68
BbsI GAAGAC 1 cut(s) 234
Bbv12I GWGCWC 1 cut(s) 68
BbvI GCAGC 1 cut(s) 313
BccI CCATC 4 cut(s) 5, 148, 338, 663
BciT130I CCWGG 1 cut(s) 542
BcoDI GTCTC 1 cut(s) 255
BfaI CTAG 1 cut(s) 201
BfuAI ACCTGC 1 cut(s) 228
BisI GCNGC 1 cut(s) 327
BlsI GCNGC 1 cut(s) 328
Bme1390I CCNGG 1 cut(s) 542
Bme18I GGWCC 2 cut(s) 78, 355
BmgT120I GGNCC 2 cut(s) 78, 355
BmiI GGNNCC 1 cut(s) 456
BmrFI CCNGG 1 cut(s) 542
BmrI ACTGGG 1 cut(s) 31
BmuI ACTGGG 1 cut(s) 31
BpiI GAAGAC 1 cut(s) 234
Bpu10I CCTNAGC 1 cut(s) 179
BpuEI CTTGAG 1 cut(s) 84
Bsa29I ATCGAT 1 cut(s) 54
BsaAI YACGTR 1 cut(s) 461
BsaBI GATNNNNATC 1 cut(s) 50
BsaJI CCNNGG 1 cut(s) 264
Bsc4I CCNNNNNNNGG 2 cut(s) 75, 146
Bse1I ACTGG 1 cut(s) 26
Bse3DI GCAATG 1 cut(s) 279
Bse8I GATNNNNATC 1 cut(s) 50
BseBI CCWGG 1 cut(s) 542
BseCI ATCGAT 1 cut(s) 54
BseDI CCNNGG 1 cut(s) 264
BseGI GGATG 1 cut(s) 31
BseJI GATNNNNATC 1 cut(s) 50
BseLI CCNNNNNNNGG 2 cut(s) 75, 146
BseMI GCAATG 1 cut(s) 279
BseMII CTCAG 1 cut(s) 483
BseNI ACTGG 1 cut(s) 26
BseSI GKGCMC 1 cut(s) 68
BseXI GCAGC 1 cut(s) 313
Bsh1285I CGRYCG 1 cut(s) 418
BshFI GGCC 2 cut(s) 441, 560
BshVI ATCGAT 1 cut(s) 54
BsiEI CGRYCG 1 cut(s) 418
BsiHKAI GWGCWC 1 cut(s) 68
BslI CCNNNNNNNGG 2 cut(s) 75, 146
BsmAI GTCTC 1 cut(s) 255
BsnI GGCC 2 cut(s) 441, 560
Bsp1286I GDGCHC 1 cut(s) 68
Bsp143I GATC 3 cut(s) 28, 415, 635
BspACI CCGC 1 cut(s) 324
BspANI GGCC 2 cut(s) 441, 560
BspCNI CTCAG 1 cut(s) 484
BspDI ATCGAT 1 cut(s) 54
BspLI GGNNCC 1 cut(s) 456
BspMI ACCTGC 1 cut(s) 228
BsrDI GCAATG 1 cut(s) 279
BsrI ACTGG 1 cut(s) 26
BssECI CCNNGG 1 cut(s) 264
BssMI GATC 3 cut(s) 28, 415, 635
BssT1I CCWWGG 1 cut(s) 264
Bst2UI CCWGG 1 cut(s) 542
BstBAI YACGTR 1 cut(s) 461
BstC8I GCNNGC 2 cut(s) 443, 662
BstDEI CTNAG 3 cut(s) 179, 492, 665
BstF5I GGATG 1 cut(s) 31
BstKTI GATC 3 cut(s) 31, 418, 638
BstMAI GTCTC 1 cut(s) 255
BstMBI GATC 3 cut(s) 28, 415, 635
BstMCI CGRYCG 1 cut(s) 418
BstMWI GCNNNNNNNGC 1 cut(s) 311
BstNI CCWGG 1 cut(s) 542
BstNSI RCATGY 1 cut(s) 64
BstSCI CCNGG 1 cut(s) 540
BstSLI GKGCMC 1 cut(s) 68
BstV1I GCAGC 1 cut(s) 313
BstV2I GAAGAC 1 cut(s) 234
BstXI CCANNNNNNTGG 1 cut(s) 365
Bsu15I ATCGAT 1 cut(s) 54
BsuRI GGCC 2 cut(s) 441, 560
BsuTUI ATCGAT 1 cut(s) 54
BtsCI GGATG 1 cut(s) 31
BtsI GCAGTG 1 cut(s) 321
BtsIMutI CAGTG 1 cut(s) 321
BveI ACCTGC 1 cut(s) 228
Cac8I GCNNGC 2 cut(s) 443, 662
CaiI CAGNNNCTG 1 cut(s) 491
Cfr13I GGNCC 2 cut(s) 78, 355
ClaI ATCGAT 1 cut(s) 54
CseI GACGC 1 cut(s) 208
CviAII CATG 7 cut(s) 61, 70, 340, 377, 518, 527, 639
CviJI RGCY 8 cut(s) 133, 305, 441, 455, 536, 560, 664, 684
CviKI_1 RGCY 8 cut(s) 133, 305, 441, 455, 536, 560, 664, 684
DdeI CTNAG 3 cut(s) 179, 492, 665
DpnI GATC 3 cut(s) 30, 417, 637
DpnII GATC 3 cut(s) 28, 415, 635
Eco130I CCWWGG 1 cut(s) 264
Eco32I GATATC 1 cut(s) 298
Eco47I GGWCC 2 cut(s) 78, 355
Eco57I CTGAAG 2 cut(s) 468, 519
EcoRII CCWGG 1 cut(s) 540
EcoRV GATATC 1 cut(s) 298
EcoT14I CCWWGG 1 cut(s) 264
ErhI CCWWGG 1 cut(s) 264
FaeI CATG 7 cut(s) 64, 73, 343, 380, 521, 530, 642
FatI CATG 7 cut(s) 60, 69, 339, 376, 517, 526, 638
Fnu4HI GCNGC 1 cut(s) 327
FokI GGATG 1 cut(s) 38
Fsp4HI GCNGC 1 cut(s) 327
FspBI CTAG 1 cut(s) 201
GluI GCNGC 1 cut(s) 327
HaeIII GGCC 2 cut(s) 441, 560
HgaI GACGC 1 cut(s) 208
Hin1II CATG 7 cut(s) 64, 73, 343, 380, 521, 530, 642
HinfI GANTC 6 cut(s) 46, 169, 488, 494, 626, 645
HphI GGTGA 1 cut(s) 290
Hpy166II GTNNAC 3 cut(s) 66, 197, 321
Hpy188I TCNGA 8 cut(s) 82, 234, 295, 420, 487, 493, 499, 680
Hpy188III TCNNGA 1 cut(s) 605
Hpy8I GTNNAC 3 cut(s) 66, 197, 321
Hpy99I CGWCG 1 cut(s) 86
HpyAV CCTTC 1 cut(s) 428
HpyCH4IV ACGT 1 cut(s) 460
HpyCH4V TGCA 2 cut(s) 66, 514
HpyF10VI GCNNNNNNNGC 1 cut(s) 311
HpyF3I CTNAG 3 cut(s) 179, 492, 665
HpySE526I ACGT 1 cut(s) 460
Hsp92II CATG 7 cut(s) 64, 73, 343, 380, 521, 530, 642
Kzo9I GATC 3 cut(s) 28, 415, 635
LmnI GCTCC 1 cut(s) 460
Lsp1109I GCAGC 1 cut(s) 313
MaeI CTAG 1 cut(s) 201
MaeII ACGT 1 cut(s) 460
MalI GATC 3 cut(s) 30, 417, 637
MboI GATC 3 cut(s) 28, 415, 635
MboII GAAGA 4 cut(s) 234, 512, 515, 608
MhlI GDGCHC 1 cut(s) 68
MluCI AATT 5 cut(s) 91, 157, 372, 507, 564
MlyI GAGTC 1 cut(s) 503
MmeI TCCRAC 1 cut(s) 105
MnlI CCTC 3 cut(s) 419, 431, 460
MroXI GAANNNNTTC 1 cut(s) 600
MseI TTAA 2 cut(s) 18, 450
MslI CAYNNNNRTG 1 cut(s) 314
MspA1I CMGCKG 1 cut(s) 326
MspR9I CCNGG 1 cut(s) 542
MvaI CCWGG 1 cut(s) 542
MwoI GCNNNNNNNGC 1 cut(s) 311
NdeII GATC 3 cut(s) 28, 415, 635
NlaIII CATG 7 cut(s) 64, 73, 343, 380, 521, 530, 642
NlaIV GGNNCC 1 cut(s) 456
NspI RCATGY 1 cut(s) 64
OliI CACNNNNGTG 1 cut(s) 314
PciI ACATGT 1 cut(s) 60
PdmI GAANNNNTTC 1 cut(s) 600
PfeI GAWTC 5 cut(s) 46, 169, 488, 626, 645
PflMI CCANNNNNTGG 2 cut(s) 75, 146
PkrI GCNGC 1 cut(s) 328
Ple19I CGATCG 1 cut(s) 418
PleI GAGTC 1 cut(s) 502
PpsI GAGTC 1 cut(s) 502
Ppu21I YACGTR 1 cut(s) 461
PscI ACATGT 1 cut(s) 60
Psp6I CCWGG 1 cut(s) 540
PspGI CCWGG 1 cut(s) 540
PspN4I GGNNCC 1 cut(s) 456
PspPI GGNCC 2 cut(s) 78, 355
PstNI CAGNNNCTG 1 cut(s) 491
PvuI CGATCG 1 cut(s) 418
RseI CAYNNNNRTG 1 cut(s) 314
SaqAI TTAA 2 cut(s) 18, 450
SatI GCNGC 1 cut(s) 327
Sau3AI GATC 3 cut(s) 28, 415, 635
Sau96I GGNCC 2 cut(s) 78, 355
SchI GAGTC 1 cut(s) 503
ScrFI CCNGG 1 cut(s) 542
SduI GDGCHC 1 cut(s) 68
SinI GGWCC 2 cut(s) 78, 355
SmiMI CAYNNNNRTG 1 cut(s) 314
SmlI CTYRAG 1 cut(s) 99
SmoI CTYRAG 1 cut(s) 99
Sse9I AATT 5 cut(s) 91, 157, 372, 507, 564
SsiI CCGC 1 cut(s) 324
SspI AATATT 1 cut(s) 153
SspMI CTAG 1 cut(s) 201
StyD4I CCNGG 1 cut(s) 540
StyI CCWWGG 1 cut(s) 264
TaiI ACGT 1 cut(s) 463
TaqI TCGA 3 cut(s) 54, 300, 349
TasI AATT 5 cut(s) 91, 157, 372, 507, 564
TfiI GAWTC 5 cut(s) 46, 169, 488, 626, 645
Tru1I TTAA 2 cut(s) 18, 450
Tru9I TTAA 2 cut(s) 18, 450
TscAI CASTG 1 cut(s) 321
TseI GCWGC 1 cut(s) 326
TspDTI ATGAA 6 cut(s) 86, 302, 356, 365, 467, 534
TspGWI ACGGA 2 cut(s) 99, 202
TspRI CASTG 1 cut(s) 321
Van91I CCANNNNNTGG 2 cut(s) 75, 146
VneI GTGCAC 1 cut(s) 64
VpaK11BI GGWCC 2 cut(s) 78, 355
XapI RAATTY 4 cut(s) 91, 372, 507, 564
XceI RCATGY 1 cut(s) 64
XmnI GAANNNNTTC 1 cut(s) 600
XspI CTAG 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.