FvH4_6g20603

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000291
Physical Location & Seq
Forward (+)
14198519 .. 14203815
5297 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g20603.t1

Sequence Viewer

Length: 2148 bp
ATGGCTATAACTGCATATCATTTTGGAGCATTTTCAGCAGCTAGATGTGCATTGGAATTGAGTGAGGAAGAGAGGAAGTTGTGGAATGACCAGCTGAAGCCATGGAGGCTTACAAGATGGAATTGGACAAATACAACAAGTATGATTTATTTTGATTCTTATAGCGTTGCCTGTGAGAAAGACGAGACGGAGGAAGGAGGCGATGACTATGAAGGGGCTAAATTTGCAGTGGAAAATTCTCCAGAAAAGGTAAACATTGTATTGCAGAGAATTCTGTTGTCTCCCAGGAAGGAAGACGGTCAACGTAGGAACCTTTTCAAATCGCATTGCTCTATCAACAACAAGGTGTGTAATCTGATTGTGGATAATGGGAGTTGCGAAAACTTTGTTGCTGAAAAGTTGGTAGAGTATTTGAAGTTACCAACAGAGGCCCATGTGATGCCCTATTCTCTAGGTTGGGTGAAGAAGGGTCCTCAAGTGCGCGTAACCAGAACCTACAAAGTGCATGTTTCGATTGGTAAGCATTATAGGGATGAAGTAGTTTGTGATGTTCTGGACATGGATGCTTGTCATATTCTGTTTGGGCGTCCTTGGCAGTATGATGTTGATGTTACTTACAGGGGTCGGGATAATGTGATGTTGTTTATGTGGGGTGAGTTTAAGATTGCTATGGCTCCTGTGGTGACCTTTGACAAACCTATAGAAAAGAAGAGGGAGAACTTTCTAATCTTGTCCAAGAATGAGCGGGAGATAGAGGAAGACTTTAAAGAGTCAGAGTTGTGTTGTCCTGTGGTGATTAAGGGGTTGTTTAGTGCAGAGAAAGAACCTGTGGAGATCCCCGAAGAGGTACAACAATTGCTTAAGAGATTTGAGGAGTTGATTGCTGATGAGCTACCTAATGAGCTACCACCCATGCGAGACATCCAACACCAGATTGATTTTATTCCAGGTGCCAGTTTACCAAATCTTCCCCATTACCGTATGAGTCCTAAAGAGAATAAGATCTTGAGGGAGCAGATTGAGGACTTGCTGAAGAAGGGGTTTATTCGTGAGAGCATGAGCCCTTGTGCAAGTCCAGTCCTTCTTGTTCCTAAGAAGGGCAACCAATGGCGGATGTTCTATGGTGTTTTCAAAATAGATCTTCGCAGTGGTTACCATCAGATTCGAATTAAACCAGGGGATGAGTGGAAGACGGCGTTCAAGAGCAAGGATGGTCTTTTTGAGCGGATGGTGGATGAGGAGAAGATTCGTGCCATACAAGACTGGCCAGCCCCAAAGACAGTTTCTGAGGTACGTAGTTTTCATGGTTTGGCTACGTTCTACAGAAGATTTGTTCGACATTTTAGCACCATTACTGCTCCCATTACTGAATGTTTGAAGAAAGGGAAGTTTCACTGGGGAGAGGCACAAGAACAGAGTTTTGCTTTGATAAAGGAGAAGCTTTGCTCTGCACCTGTCCTGGCACTGCCTAACTTTGATAAGATATTTGAGGTGGAGTGTGATGCTAGTGGAGTGGGGGTTGGTGCTGTGTTGTCCCAATTGAAGAGGCCAGTAGCTTTCTTCAGTGAAAAGCTTAGCGAAGCTCACCAGAAGTGGAGTACTTACGACCAGGAGTTCTATGCGGTCTTCCGGGCGTTAAAACAGTGGGAATATTACCTTGTTCAGAGGGAGTTTGTCTTGTATACGGACCATCAAGCCTTGAAGTTCCTTAACAGGTGTGCAGATGCTTTGAGTAGAAGAGCATCCTTGATGGTGACTTTGTCACAGGAGATAGTGGGTTTCGACATGCTCAAGAATTTGTATGCAGAGGATGTTGACTTCAAGGAAATTTGGGCCAAATGCAGTGGCAATCATACAGTTGCGGACTATTACATTAGTGATGGTTATTTGTTCAAGGGTAATCAGCTTTGTGTTCCAATTTCTTCATTGAGGGAGATGTTGATCCGAGACTTGCATGGTGGGGATTTGAGTGGGCATTTAGGCCGAGATAAAACTATTGCCAGCTTGGAGGAGCGGTATTTTTGGCCCCATTTGAGGAGAGATGCCACGGAAATTGTCCGGAAGTGTTATGTTTGTCAGGTTTCTAAAGGTCAGTCTCAAAATACTGGTCTTTTTACACCTTTACCTGTTCTTGAAGACATTCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 Retrotrans_gag rve zf-CCHC zf-H2C2

Protein Analysis

716

Amino Acids

82.86

Weight (kDa)

6.45

Isoelectric Point (pI)

45.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RT_RNaseH_2 PF17919 466 - 559 1.1e-29 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 491 - 588 6.4e-27 RNase H-like domain found in reverse transcriptase
Integrase_H2C2 PF17921 641 - 696 6.2e-17 Integrase zinc binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000291)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00860
fragaria_vesca FvH4_1g23712 FvH4_1g29809 FvH4_1g29810 FvH4_2g02661 FvH4_2g13451 FvH4_2g17921 FvH4_2g17922 FvH4_2g19251 FvH4_2g19252 FvH4_2g28221 FvH4_2g35961 FvH4_3g10372 FvH4_3g12461 FvH4_3g12461 FvH4_3g27861 FvH4_3g34591 FvH4_3g40201 FvH4_3g44612 FvH4_4g08352 FvH4_4g12251 FvH4_4g12742 FvH4_4g13904 FvH4_4g14287 FvH4_4g15243 FvH4_4g24071 FvH4_4g33448 FvH4_5g21912 FvH4_5g39371 FvH4_6g14992 FvH4_6g15221 FvH4_6g20603 FvH4_6g31093 FvH4_6g32372 FvH4_6g33012
malus_domestica MD11G1009100.v1.1 MD13G1145000.v1.1 MD16G1138700.v1.1
prunus_persica Prupe.5G246300_v2.0.a1 Prupe.7G034800_v2.0.a1 Prupe.8G084500_v2.0.a1
pyrus_communis pycom01g18240 pycom04g00330 pycom05g09010 pycom06g01670 pycom06g01690 pycom06g07180 pycom06g11620 pycom10g05720 pycom1134g00040 pycom1134g00060 pycom12486g00010 pycom12555g00230 pycom13g21670 pycom13g23130 pycom13g23140 pycom14g10580
rosa_chinensis RchiOBHm_Chr1g0330691 RchiOBHm_Chr2g0106171 RchiOBHm_Chr2g0134731 RchiOBHm_Chr2g0142791 RchiOBHm_Chr2g0149861 RchiOBHm_Chr3g0452401 RchiOBHm_Chr3g0461881 RchiOBHm_Chr4g0401341 RchiOBHm_Chr5g0075641 RchiOBHm_Chr6g0265961 RchiOBHm_Chr7g0200201 RchiOBHm_Chr7g0237811
rosa_laevigata RLG00000002773
rosa_multiflora Rmu_co8037806.1_g000001 Rmu_co8445989.1_g000001 Rmu_sc0000745.1_g000039 Rmu_sc0004448.1_g000029 Rmu_sc0004488.1_g000002 Rmu_sc0004591.1_g000018 Rmu_sc0005065.1_g000030 Rmu_sc0005150.1_g000005 Rmu_sc0005654.1_g000011 Rmu_sc0006986.1_g000016
rosa_roxburghii Rroxscaffold_164G00436490 Rroxscaffold_175G00432490 Rroxscaffold_1G00059440 Rroxscaffold_1G00064410 Rroxscaffold_2G00100310 Rroxscaffold_2G00128170 Rroxscaffold_3G00239420 Rroxscaffold_3G00264970 Rroxscaffold_3G00271550 Rroxscaffold_4G00300240 Rroxscaffold_5G00385050 Rroxscaffold_6G00399720
rosa_rugosa Rorug02G0252200
rosa_samantha Rh2DG251900 Rh7CG329900
rosa_wichuraiana Rw0G004800 Rw1G000850 Rw1G022350 Rw2G027030 Rw2G027760 Rw2G028410 Rw2G029130 Rw2G029390 Rw2G032490 Rw2G039460 Rw2G047800 Rw2G050340 Rw3G026430 Rw4G018370 Rw4G030750 Rw4G033140 Rw5G011950 Rw5G012010 Rw5G029280 Rw5G040190 Rw5G044570 Rw5G048240 Rw6G000340 Rw6G010140 Rw6G026480 Rw7G033750 Rw7G037250 Rw7G042080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 950
AccBSI CCGCTC 3 cut(s) 745, 1225, 2014
AccI GTMKAC 1 cut(s) 1682
AccII CGCG 1 cut(s) 483
AccIII TCCGGA 1 cut(s) 2058
AciI CCGC 6 cut(s) 745, 1111, 1225, 1622, 1862, 2014
AclWI GGATC 2 cut(s) 829, 1936
AcoI YGGCCR 1 cut(s) 1265
AcsI RAATTY 5 cut(s) 221, 235, 270, 1795, 1827
AcuI CTGAAG 3 cut(s) 116, 1052, 1546
AcyI GRCGYC 1 cut(s) 586
AfaI GTAC 3 cut(s) 849, 1293, 1600
AfiI CCNNNNNNNGG 3 cut(s) 844, 1097, 2034
AflII CTTAAG 1 cut(s) 860
AjnI CCWGG 5 cut(s) 284, 946, 1174, 1458, 1608
AjuI GAANNNNNNNTTGG 2 cut(s) 1267, 1299
Alw26I GTCTC 5 cut(s) 179, 285, 912, 1941, 2100
AlwI GGATC 2 cut(s) 829, 1936
AlwNI CAGNNNCTG 1 cut(s) 1286
Aor13HI TCCGGA 1 cut(s) 2058
AoxI GGCC 6 cut(s) 429, 1265, 1547, 1833, 1981, 2024
ApeKI GCWGC 1 cut(s) 38
ApoI RAATTY 5 cut(s) 221, 235, 270, 1795, 1827
ArsI GACNNNNNNTTYG 2 cut(s) 2092, 2124
Asp700I GAANNNNTTC 2 cut(s) 314, 2139
AspLEI GCGC 1 cut(s) 483
AspS9I GGNCC 5 cut(s) 430, 470, 1687, 1833, 2025
AsuC2I CCSGG 1 cut(s) 1631
AsuHPI GGTGA 6 cut(s) 472, 665, 694, 805, 1577, 1765
AsuII TTCGAA 1 cut(s) 1165
AvaII GGWCC 2 cut(s) 470, 1687
BalI TGGCCA 1 cut(s) 1267
BanI GGYRCC 1 cut(s) 950
BanII GRGCYC 1 cut(s) 1064
BbsI GAAGAC 5 cut(s) 300, 765, 1196, 1618, 2142
BbvI GCAGC 1 cut(s) 50
BccI CCATC 7 cut(s) 111, 1164, 1205, 1222, 1698, 1744, 1874
BceAI ACGGC 1 cut(s) 1209
BciT130I CCWGG 5 cut(s) 286, 948, 1176, 1460, 1610
BcnI CCSGG 1 cut(s) 1631
BcoDI GTCTC 5 cut(s) 179, 285, 912, 1941, 2100
BfaI CTAG 3 cut(s) 42, 452, 1506
BfmI CTRYAG 2 cut(s) 699, 1321
BfrI CTTAAG 1 cut(s) 860
BglI GCCNNNNNGGC 1 cut(s) 106
BglII AGATCT 2 cut(s) 1002, 1138
BisI GCNGC 1 cut(s) 39
BlpI GCTNAGC 1 cut(s) 1574
BlsI GCNGC 1 cut(s) 40
BmcAI AGTACT 1 cut(s) 1600
Bme1390I CCNGG 6 cut(s) 286, 948, 1176, 1460, 1610, 1631
Bme18I GGWCC 2 cut(s) 470, 1687
BmgT120I GGNCC 5 cut(s) 430, 470, 1687, 1833, 2025
BmiI GGNNCC 5 cut(s) 311, 471, 675, 952, 2027
BmrFI CCNGG 6 cut(s) 286, 948, 1176, 1460, 1610, 1631
BmrI ACTGGG 1 cut(s) 1405
BmsI GCATC 6 cut(s) 429, 553, 1492, 1714, 1751, 2032
BmuI ACTGGG 1 cut(s) 1405
BpiI GAAGAC 5 cut(s) 300, 765, 1196, 1618, 2142
BpmI CTGGAG 1 cut(s) 225
Bpu1102I GCTNAGC 1 cut(s) 1574
Bpu14I TTCGAA 1 cut(s) 1165
BpuEI CTTGAG 3 cut(s) 459, 1027, 1775
BpuMI CCSGG 1 cut(s) 1631
BsaAI YACGTR 1 cut(s) 1295
BsaBI GATNNNNATC 1 cut(s) 1940
BsaHI GRCGYC 1 cut(s) 586
BsaJI CCNNGG 5 cut(s) 101, 284, 590, 1175, 2046
BsaWI WCCGGW 1 cut(s) 2058
BsaXI ACNNNNNCTCC 4 cut(s) 1503, 1533, 2000, 2030
Bsc4I CCNNNNNNNGG 3 cut(s) 844, 1097, 2034
Bse1I ACTGG 6 cut(s) 954, 1076, 1268, 1400, 1550, 2110
Bse3DI GCAATG 1 cut(s) 325
Bse8I GATNNNNATC 1 cut(s) 1940
BseAI TCCGGA 1 cut(s) 2058
BseBI CCWGG 5 cut(s) 286, 948, 1176, 1460, 1610
BseDI CCNNGG 5 cut(s) 101, 284, 590, 1175, 2046
BseJI GATNNNNATC 1 cut(s) 1940
BseLI CCNNNNNNNGG 3 cut(s) 844, 1097, 2034
BseMI GCAATG 1 cut(s) 325
BseMII CTCAG 1 cut(s) 1278
BseNI ACTGG 6 cut(s) 954, 1076, 1268, 1400, 1550, 2110
BseRI GAGGAG 4 cut(s) 887, 1253, 2024, 2050
BseXI GCAGC 1 cut(s) 50
BsgI GTGCAG 3 cut(s) 834, 1434, 1740
Bsh1236I CGCG 1 cut(s) 483
BshFI GGCC 6 cut(s) 431, 1267, 1549, 1835, 1983, 2026
BshNI GGYRCC 1 cut(s) 950
BsiSI CCGG 2 cut(s) 1630, 2059
BslFI GGGAC 1 cut(s) 1519
BslI CCNNNNNNNGG 3 cut(s) 844, 1097, 2034
BsmAI GTCTC 5 cut(s) 179, 285, 912, 1941, 2100
BsmBI CGTCTC 1 cut(s) 179
BsmFI GGGAC 1 cut(s) 1519
BsnI GGCC 6 cut(s) 431, 1267, 1549, 1835, 1983, 2026
Bsp119I TTCGAA 1 cut(s) 1165
Bsp1286I GDGCHC 1 cut(s) 1064
Bsp13I TCCGGA 1 cut(s) 2058
Bsp143I GATC 4 cut(s) 834, 1002, 1138, 1941
Bsp1720I GCTNAGC 1 cut(s) 1574
Bsp19I CCATGG 1 cut(s) 101
BspACI CCGC 6 cut(s) 745, 1111, 1225, 1622, 1862, 2014
BspANI GGCC 6 cut(s) 431, 1267, 1549, 1835, 1983, 2026
BspCNI CTCAG 1 cut(s) 1279
BspEI TCCGGA 1 cut(s) 2058
BspFNI CGCG 1 cut(s) 483
BspLI GGNNCC 5 cut(s) 311, 471, 675, 952, 2027
BspPI GGATC 2 cut(s) 829, 1936
BspQI GCTCTTC 1 cut(s) 1732
BspT104I TTCGAA 1 cut(s) 1165
BspT107I GGYRCC 1 cut(s) 950
BspTI CTTAAG 1 cut(s) 860
BsrBI CCGCTC 3 cut(s) 745, 1225, 2014
BsrDI GCAATG 1 cut(s) 325
BsrI ACTGG 6 cut(s) 954, 1076, 1268, 1400, 1550, 2110
BssECI CCNNGG 5 cut(s) 101, 284, 590, 1175, 2046
BssMI GATC 4 cut(s) 834, 1002, 1138, 1941
BssNAI GTATAC 1 cut(s) 1683
BssNI GRCGYC 1 cut(s) 586
BssT1I CCWWGG 2 cut(s) 101, 590
Bst1107I GTATAC 1 cut(s) 1683
Bst2UI CCWGG 5 cut(s) 286, 948, 1176, 1460, 1610
Bst4CI ACNGT 5 cut(s) 299, 980, 1282, 1644, 1858
Bst6I CTCTTC 5 cut(s) 63, 704, 837, 1538, 1732
BstACI GRCGYC 1 cut(s) 586
BstAFI CTTAAG 1 cut(s) 860
BstBAI YACGTR 1 cut(s) 1295
BstBI TTCGAA 1 cut(s) 1165
BstC8I GCNNGC 2 cut(s) 1269, 2002
BstDEI CTNAG 3 cut(s) 1092, 1287, 1574
BstDSI CCRYGG 2 cut(s) 101, 2046
BstEII GGTNACC 2 cut(s) 682, 1151
BstFNI CGCG 1 cut(s) 483
BstHHI GCGC 1 cut(s) 483
BstKTI GATC 4 cut(s) 837, 1005, 1141, 1944
BstMAI GTCTC 5 cut(s) 179, 285, 912, 1941, 2100
BstMBI GATC 4 cut(s) 834, 1002, 1138, 1941
BstMWI GCNNNNNNNGC 6 cut(s) 11, 35, 47, 106, 224, 592
BstNI CCWGG 5 cut(s) 286, 948, 1176, 1460, 1610
BstNSI RCATGY 2 cut(s) 509, 1789
BstPI GGTNACC 2 cut(s) 682, 1151
BstSCI CCNGG 6 cut(s) 284, 946, 1174, 1458, 1608, 1629
BstSFI CTRYAG 2 cut(s) 699, 1321
BstSNI TACGTA 1 cut(s) 1295
BstUI CGCG 1 cut(s) 483
BstV1I GCAGC 1 cut(s) 50
BstV2I GAAGAC 5 cut(s) 300, 765, 1196, 1618, 2142
BstX2I RGATCY 3 cut(s) 834, 1002, 1138
BstYI RGATCY 3 cut(s) 834, 1002, 1138
BstZ17I GTATAC 1 cut(s) 1683
BsuRI GGCC 6 cut(s) 431, 1267, 1549, 1835, 1983, 2026
BtgI CCRYGG 2 cut(s) 101, 2046
BtgZI GCGATG 1 cut(s) 216
BtsI GCAGTG 4 cut(s) 234, 1153, 1463, 1849
BtsIMutI CAGTG 7 cut(s) 234, 1153, 1393, 1463, 1570, 1649, 1849
Cac8I GCNNGC 2 cut(s) 1269, 2002
CaiI CAGNNNCTG 1 cut(s) 1286
CfoI GCGC 1 cut(s) 483
Cfr13I GGNCC 5 cut(s) 430, 470, 1687, 1833, 2025
CseI GACGC 1 cut(s) 575
Csp6I GTAC 3 cut(s) 848, 1292, 1599
CspCI CAANNNNNGTGG 4 cut(s) 1825, 1860, 2035, 2070
CviAII CATG 9 cut(s) 102, 434, 506, 559, 913, 1057, 1304, 1786, 1955
CviQI GTAC 3 cut(s) 848, 1292, 1599
DdeI CTNAG 3 cut(s) 1092, 1287, 1574
DpnI GATC 4 cut(s) 836, 1004, 1140, 1943
DpnII GATC 4 cut(s) 834, 1002, 1138, 1941
DraI TTTAAA 1 cut(s) 766
EaeI YGGCCR 1 cut(s) 1265
Eam1104I CTCTTC 5 cut(s) 63, 704, 837, 1538, 1732
EarI CTCTTC 5 cut(s) 63, 704, 837, 1538, 1732
EciI GGCGGA 1 cut(s) 1126
Eco105I TACGTA 1 cut(s) 1295
Eco130I CCWWGG 2 cut(s) 101, 590
Eco24I GRGCYC 1 cut(s) 1064
Eco47I GGWCC 2 cut(s) 470, 1687
Eco57I CTGAAG 3 cut(s) 116, 1052, 1546
Eco91I GGTNACC 2 cut(s) 682, 1151
EcoO109I RGGNCCY 1 cut(s) 470
EcoO65I GGTNACC 2 cut(s) 682, 1151
EcoRI GAATTC 1 cut(s) 270
EcoRII CCWGG 5 cut(s) 284, 946, 1174, 1458, 1608
EcoT14I CCWWGG 2 cut(s) 101, 590
EcoT38I GRGCYC 1 cut(s) 1064
ErhI CCWWGG 2 cut(s) 101, 590
Esp3I CGTCTC 1 cut(s) 179
FaeI CATG 9 cut(s) 105, 437, 509, 562, 916, 1060, 1307, 1789, 1958
FaqI GGGAC 1 cut(s) 1519
FatI CATG 9 cut(s) 101, 433, 505, 558, 912, 1056, 1303, 1785, 1954
FauI CCCGC 1 cut(s) 738
FblI GTMKAC 1 cut(s) 1682
Fnu4HI GCNGC 1 cut(s) 39
FriOI GRGCYC 1 cut(s) 1064
Fsp4HI GCNGC 1 cut(s) 39
FspBI CTAG 3 cut(s) 42, 452, 1506
GlaI GCGC 1 cut(s) 482
GluI GCNGC 1 cut(s) 39
GsuI CTGGAG 1 cut(s) 225
HaeIII GGCC 6 cut(s) 431, 1267, 1549, 1835, 1983, 2026
HapII CCGG 2 cut(s) 1630, 2059
HgaI GACGC 1 cut(s) 575
HhaI GCGC 1 cut(s) 483
Hin1I GRCGYC 1 cut(s) 586
Hin1II CATG 9 cut(s) 105, 437, 509, 562, 916, 1060, 1307, 1789, 1958
Hin6I GCGC 1 cut(s) 481
HinP1I GCGC 1 cut(s) 481
HincII GTYRAC 2 cut(s) 302, 1816
HindII GTYRAC 2 cut(s) 302, 1816
HindIII AAGCTT 2 cut(s) 1439, 1571
HinfI GANTC 5 cut(s) 155, 770, 985, 1162, 1246
HpaII CCGG 2 cut(s) 1630, 2059
HphI GGTGA 6 cut(s) 472, 665, 694, 805, 1577, 1765
Hpy166II GTNNAC 5 cut(s) 253, 302, 959, 1683, 1816
Hpy188I TCNGA 6 cut(s) 357, 775, 1161, 1288, 1665, 1946
Hpy188III TCNNGA 9 cut(s) 242, 554, 626, 1006, 1049, 1201, 1792, 2059, 2132
Hpy8I GTNNAC 5 cut(s) 253, 302, 959, 1683, 1816
HpyAV CCTTC 7 cut(s) 188, 206, 283, 460, 1030, 1090, 1091
HpyCH4III ACNGT 5 cut(s) 299, 980, 1282, 1644, 1858
HpyCH4IV ACGT 3 cut(s) 304, 1294, 1316
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 35, 47, 106, 224, 592
HpyF3I CTNAG 3 cut(s) 1092, 1287, 1574
HpySE526I ACGT 3 cut(s) 304, 1294, 1316
Hsp92I GRCGYC 1 cut(s) 586
Hsp92II CATG 9 cut(s) 105, 437, 509, 562, 916, 1060, 1307, 1789, 1958
HspAI GCGC 1 cut(s) 481
Kpn2I TCCGGA 1 cut(s) 2058
Kzo9I GATC 4 cut(s) 834, 1002, 1138, 1941
LguI GCTCTTC 1 cut(s) 1732
LmnI GCTCC 5 cut(s) 26, 679, 1012, 1363, 2011
Lsp1109I GCAGC 1 cut(s) 50
LweI GCATC 6 cut(s) 429, 553, 1492, 1714, 1751, 2032
MaeI CTAG 3 cut(s) 42, 452, 1506
MaeII ACGT 3 cut(s) 304, 1294, 1316
MaeIII GTNAC 7 cut(s) 417, 484, 610, 682, 1151, 1753, 1761
MalI GATC 4 cut(s) 836, 1004, 1140, 1943
MbiI CCGCTC 3 cut(s) 745, 1225, 2014
MboI GATC 4 cut(s) 834, 1002, 1138, 1941
MfeI CAATTG 2 cut(s) 854, 1538
MflI RGATCY 3 cut(s) 834, 1002, 1138
MhlI GDGCHC 1 cut(s) 1064
MlsI TGGCCA 1 cut(s) 1267
MluNI TGGCCA 1 cut(s) 1267
MlyI GAGTC 2 cut(s) 779, 994
MmeI TCCRAC 1 cut(s) 949
Mox20I TGGCCA 1 cut(s) 1267
MroI TCCGGA 1 cut(s) 2058
MroXI GAANNNNTTC 2 cut(s) 314, 2139
MscI TGGCCA 1 cut(s) 1267
MseI TTAA 7 cut(s) 660, 765, 798, 861, 1170, 1637, 1710
Msp20I TGGCCA 1 cut(s) 1267
MspA1I CMGCKG 1 cut(s) 94
MspCI CTTAAG 1 cut(s) 860
MspI CCGG 2 cut(s) 1630, 2059
MspR9I CCNGG 6 cut(s) 286, 948, 1176, 1460, 1610, 1631
MunI CAATTG 2 cut(s) 854, 1538
MvaI CCWGG 5 cut(s) 286, 948, 1176, 1460, 1610
MvnI CGCG 1 cut(s) 483
MwoI GCNNNNNNNGC 6 cut(s) 11, 35, 47, 106, 224, 592
NciI CCSGG 1 cut(s) 1631
NcoI CCATGG 1 cut(s) 101
NdeII GATC 4 cut(s) 834, 1002, 1138, 1941
NlaIII CATG 9 cut(s) 105, 437, 509, 562, 916, 1060, 1307, 1789, 1958
NlaIV GGNNCC 5 cut(s) 311, 471, 675, 952, 2027
NmeAIII GCCGAG 1 cut(s) 2009
NmuCI GTSAC 3 cut(s) 682, 1753, 1761
NspI RCATGY 2 cut(s) 509, 1789
NspV TTCGAA 1 cut(s) 1165
PciSI GCTCTTC 1 cut(s) 1732
PdmI GAANNNNTTC 2 cut(s) 314, 2139
PfeI GAWTC 3 cut(s) 155, 1162, 1246
PflFI GACNNNGTC 1 cut(s) 1759
PkrI GCNGC 1 cut(s) 40
PleI GAGTC 2 cut(s) 778, 993
PpsI GAGTC 2 cut(s) 778, 993
Ppu21I YACGTR 1 cut(s) 1295
PpuMI RGGWCCY 1 cut(s) 470
Psp5II RGGWCCY 1 cut(s) 470
Psp6I CCWGG 5 cut(s) 284, 946, 1174, 1458, 1608
PspEI GGTNACC 2 cut(s) 682, 1151
PspGI CCWGG 5 cut(s) 284, 946, 1174, 1458, 1608
PspN4I GGNNCC 5 cut(s) 311, 471, 675, 952, 2027
PspPI GGNCC 5 cut(s) 430, 470, 1687, 1833, 2025
PspPPI RGGWCCY 1 cut(s) 470
PstNI CAGNNNCTG 1 cut(s) 1286
PsuI RGATCY 3 cut(s) 834, 1002, 1138
PsyI GACNNNGTC 1 cut(s) 1759
PvuII CAGCTG 1 cut(s) 94
RsaI GTAC 3 cut(s) 849, 1293, 1600
RsaNI GTAC 3 cut(s) 848, 1292, 1599
SapI GCTCTTC 1 cut(s) 1732
SaqAI TTAA 7 cut(s) 660, 765, 798, 861, 1170, 1637, 1710
SatI GCNGC 1 cut(s) 39
Sau3AI GATC 4 cut(s) 834, 1002, 1138, 1941
Sau96I GGNCC 5 cut(s) 430, 470, 1687, 1833, 2025
ScaI AGTACT 1 cut(s) 1600
SchI GAGTC 2 cut(s) 779, 994
ScrFI CCNGG 6 cut(s) 286, 948, 1176, 1460, 1610, 1631
SduI GDGCHC 1 cut(s) 1064
SfaNI GCATC 6 cut(s) 429, 553, 1492, 1714, 1751, 2032
SfcI CTRYAG 2 cut(s) 699, 1321
SfuI TTCGAA 1 cut(s) 1165
SinI GGWCC 2 cut(s) 470, 1687
SmlI CTYRAG 4 cut(s) 474, 860, 1006, 1790
SmoI CTYRAG 4 cut(s) 474, 860, 1006, 1790
SnaBI TACGTA 1 cut(s) 1295
SsiI CCGC 6 cut(s) 745, 1111, 1225, 1622, 1862, 2014
SspI AATATT 1 cut(s) 1652
SspMI CTAG 3 cut(s) 42, 452, 1506
StyD4I CCNGG 6 cut(s) 284, 946, 1174, 1458, 1608, 1629
StyI CCWWGG 2 cut(s) 101, 590
TaaI ACNGT 5 cut(s) 299, 980, 1282, 1644, 1858
TaiI ACGT 3 cut(s) 307, 1297, 1319
TaqI TCGA 4 cut(s) 512, 1165, 1336, 1782
TatI WGTACW 1 cut(s) 1598
TfiI GAWTC 3 cut(s) 155, 1162, 1246
Tru1I TTAA 7 cut(s) 660, 765, 798, 861, 1170, 1637, 1710
Tru9I TTAA 7 cut(s) 660, 765, 798, 861, 1170, 1637, 1710
TscAI CASTG 7 cut(s) 234, 1153, 1400, 1470, 1570, 1649, 1849
TseFI GTSAC 3 cut(s) 682, 1753, 1761
TseI GCWGC 1 cut(s) 38
Tsp45I GTSAC 3 cut(s) 682, 1753, 1761
TspDTI ATGAA 4 cut(s) 225, 549, 1292, 1914
TspGWI ACGGA 3 cut(s) 203, 1700, 2063
TspRI CASTG 7 cut(s) 234, 1153, 1400, 1470, 1570, 1649, 1849
Tth111I GACNNNGTC 1 cut(s) 1759
Vha464I CTTAAG 1 cut(s) 860
VpaK11BI GGWCC 2 cut(s) 470, 1687
XapI RAATTY 5 cut(s) 221, 235, 270, 1795, 1827
XceI RCATGY 2 cut(s) 509, 1789
XcmI CCANNNNNNNNNTGG 1 cut(s) 1182
XmiI GTMKAC 1 cut(s) 1682
XmnI GAANNNNTTC 2 cut(s) 314, 2139
XspI CTAG 3 cut(s) 42, 452, 1506
ZrmI AGTACT 1 cut(s) 1600
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.