Rw5G011950
ERF Family

DNA RNA polymerases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000291
Physical Location & Seq
Forward (+)
13869004 .. 13870396
1393 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G011950.1

Sequence Viewer

Length: 963 bp
ATGAGTCCTAAAGAGAACAAGATTTTGAGGGAGCAGATTGAAGACTTGCTGAAGAAAGGGTTCATTCGTGAAAGTATGAGTCCTTGTGCAGTTCCAGTCCTCCTTGTTCCTAAGAAGGGTAATCAATGGCGGCTGTATGTTGATAGCAGGGCTATAAATAAGATCACTGTGAAGTACAGGTTTCCTATCCCTCGTTTGGAGGACATGCTTGATGAGTTGGAGGGTTCGAAGCTGTTGTTTTTGGGTTTTGTGGTTGGCGAGGAAGGCATTCAGGTTGATGAAGAGAAGGTACGAGCTATAAGAGAATGGCCAGCTCCAAAAACAGTTTCTGAAGTGCGGAAAGAGCAAGAGAAGAGCTTTGCCTTAATCAAGGAAAAACTTTATACTGCACCAGTTCTAGCTCTTCCCAATTTCGACAAGGTCTTTGAGGTGGAATGTGATGCTAGTAGTGTGGGAGTAGGTGCTATGCTGTCACAAGAAAAGAGACCAGTAGCGTTCTTTAGTGAAAAGCTAAGTGAAGCTCGACAAAAGTGGAGTACTTATGATCAGGAATTTTATGCAGTGTTCCGAGCATTGAAGCAATGGGAGCACTACCTTATTCAGAGAGAGTTTGTACTGTTCACTGATCATCAGGCCTTGAAGTACCTTAGCAGTCAGAAAACTGTAAACAAGATGCATGCAAGATGGGTGAGTTTTCTGCAGAAAATTCCTTTTGTGATTCAACATAAATCTGGTACTCTTGATAGGGCAGCAGATGCTTTAAGTAGGAGAGCTTCCTTGCTGGTCACTCTAGCTCAGGAGGTTGTGGGTTTTGATCTCTTGAAGGACTTATATGAGGAAGATGTTGATTTTAAGGAAATTTGGGCCAAGTGCAGTAGCAATCATGCAGTTGCAGATTTCCATGTGCGTGATGGATATTTATTCAAAGGCAATCGACTTTATATTCCTAGTTCCTCATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 Retrotrans_gag rve zf-H2C2

Protein Analysis

320

Amino Acids

37.0

Weight (kDa)

8.53

Isoelectric Point (pI)

47.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RT_RNaseH_2 PF17919 114 - 205 3.4e-29 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 137 - 235 5.2e-33 RNase H-like domain found in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000291)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00860
fragaria_vesca FvH4_1g23712 FvH4_1g29809 FvH4_1g29810 FvH4_2g02661 FvH4_2g13451 FvH4_2g17921 FvH4_2g17922 FvH4_2g19251 FvH4_2g19252 FvH4_2g28221 FvH4_2g35961 FvH4_3g10372 FvH4_3g12461 FvH4_3g12461 FvH4_3g27861 FvH4_3g34591 FvH4_3g40201 FvH4_3g44612 FvH4_4g08352 FvH4_4g12251 FvH4_4g12742 FvH4_4g13904 FvH4_4g14287 FvH4_4g15243 FvH4_4g24071 FvH4_4g33448 FvH4_5g21912 FvH4_5g39371 FvH4_6g14992 FvH4_6g15221 FvH4_6g20603 FvH4_6g31093 FvH4_6g32372 FvH4_6g33012
malus_domestica MD11G1009100.v1.1 MD13G1145000.v1.1 MD16G1138700.v1.1
prunus_persica Prupe.5G246300_v2.0.a1 Prupe.7G034800_v2.0.a1 Prupe.8G084500_v2.0.a1
pyrus_communis pycom01g18240 pycom04g00330 pycom05g09010 pycom06g01670 pycom06g01690 pycom06g07180 pycom06g11620 pycom10g05720 pycom1134g00040 pycom1134g00060 pycom12486g00010 pycom12555g00230 pycom13g21670 pycom13g23130 pycom13g23140 pycom14g10580
rosa_chinensis RchiOBHm_Chr1g0330691 RchiOBHm_Chr2g0106171 RchiOBHm_Chr2g0134731 RchiOBHm_Chr2g0142791 RchiOBHm_Chr2g0149861 RchiOBHm_Chr3g0452401 RchiOBHm_Chr3g0461881 RchiOBHm_Chr4g0401341 RchiOBHm_Chr5g0075641 RchiOBHm_Chr6g0265961 RchiOBHm_Chr7g0200201 RchiOBHm_Chr7g0237811
rosa_laevigata RLG00000002773
rosa_multiflora Rmu_co8037806.1_g000001 Rmu_co8445989.1_g000001 Rmu_sc0000745.1_g000039 Rmu_sc0004448.1_g000029 Rmu_sc0004488.1_g000002 Rmu_sc0004591.1_g000018 Rmu_sc0005065.1_g000030 Rmu_sc0005150.1_g000005 Rmu_sc0005654.1_g000011 Rmu_sc0006986.1_g000016
rosa_roxburghii Rroxscaffold_164G00436490 Rroxscaffold_175G00432490 Rroxscaffold_1G00059440 Rroxscaffold_1G00064410 Rroxscaffold_2G00100310 Rroxscaffold_2G00128170 Rroxscaffold_3G00239420 Rroxscaffold_3G00264970 Rroxscaffold_3G00271550 Rroxscaffold_4G00300240 Rroxscaffold_5G00385050 Rroxscaffold_6G00399720
rosa_rugosa Rorug02G0252200
rosa_samantha Rh2DG251900 Rh7CG329900
rosa_wichuraiana Rw0G004800 Rw1G000850 Rw1G022350 Rw2G027030 Rw2G027760 Rw2G028410 Rw2G029130 Rw2G029390 Rw2G032490 Rw2G039460 Rw2G047800 Rw2G050340 Rw3G026430 Rw4G018370 Rw4G030750 Rw4G033140 Rw5G011950 Rw5G012010 Rw5G029280 Rw5G040190 Rw5G044570 Rw5G048240 Rw6G000340 Rw6G010140 Rw6G026480 Rw7G033750 Rw7G037250 Rw7G042080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 130, 337
AcoI YGGCCR 1 cut(s) 308
AcsI RAATTY 3 cut(s) 551, 705, 858
AcuI CTGAAG 2 cut(s) 71, 351
AfaI GTAC 6 cut(s) 176, 291, 538, 615, 644, 736
AfiI CCNNNNNNNGG 2 cut(s) 116, 196
AgsI TTSAA 6 cut(s) 41, 577, 640, 722, 823, 925
AjuI GAANNNNNNNTTGG 2 cut(s) 310, 342
AluBI AGCT 9 cut(s) 232, 296, 314, 357, 401, 511, 521, 773, 794
AluI AGCT 9 cut(s) 232, 296, 314, 357, 401, 511, 521, 773, 794
Alw21I GWGCWC 1 cut(s) 591
Alw26I GTCTC 1 cut(s) 478
AlwNI CAGNNNCTG 1 cut(s) 329
AoxI GGCC 3 cut(s) 308, 633, 864
ApeKI GCWGC 1 cut(s) 749
ApoI RAATTY 3 cut(s) 551, 705, 858
ArsI GACNNNNNNTTYG 2 cut(s) 407, 439
Asp700I GAANNNNTTC 2 cut(s) 59, 267
AspS9I GGNCC 1 cut(s) 864
AsuHPI GGTGA 1 cut(s) 700
AsuII TTCGAA 1 cut(s) 227
BalI TGGCCA 1 cut(s) 310
BarI GAAGNNNNNNTAC 4 cut(s) 273, 305, 757, 789
BbsI GAAGAC 1 cut(s) 48
Bbv12I GWGCWC 1 cut(s) 591
BbvI GCAGC 1 cut(s) 761
BccI CCATC 2 cut(s) 678, 905
BclI TGATCA 2 cut(s) 544, 625
BcoDI GTCTC 1 cut(s) 478
BfaI CTAG 4 cut(s) 398, 444, 791, 948
BfmI CTRYAG 1 cut(s) 698
BisI GCNGC 2 cut(s) 131, 750
BlsI GCNGC 2 cut(s) 132, 751
BmcAI AGTACT 1 cut(s) 538
BmgT120I GGNCC 1 cut(s) 864
BmsI GCATC 3 cut(s) 430, 663, 745
BpiI GAAGAC 1 cut(s) 48
Bpu10I CCTNAGC 2 cut(s) 647, 795
Bpu14I TTCGAA 1 cut(s) 227
BsaI GGTCTC 1 cut(s) 478
Bsc4I CCNNNNNNNGG 2 cut(s) 116, 196
Bse1I ACTGG 3 cut(s) 95, 392, 488
Bse3DI GCAATG 1 cut(s) 587
BseLI CCNNNNNNNGG 2 cut(s) 116, 196
BseMI GCAATG 1 cut(s) 587
BseMII CTCAG 1 cut(s) 809
BseNI ACTGG 3 cut(s) 95, 392, 488
BseXI GCAGC 1 cut(s) 761
BsgI GTGCAG 3 cut(s) 108, 372, 892
BshFI GGCC 3 cut(s) 310, 635, 866
BsiHKAI GWGCWC 1 cut(s) 591
BslI CCNNNNNNNGG 2 cut(s) 116, 196
BsmAI GTCTC 1 cut(s) 478
BsmI GAATGC 1 cut(s) 267
BsnI GGCC 3 cut(s) 310, 635, 866
Bso31I GGTCTC 1 cut(s) 478
Bsp119I TTCGAA 1 cut(s) 227
Bsp1286I GDGCHC 1 cut(s) 591
Bsp143I GATC 4 cut(s) 162, 544, 625, 814
BspACI CCGC 2 cut(s) 130, 337
BspANI GGCC 3 cut(s) 310, 635, 866
BspCNI CTCAG 1 cut(s) 808
BspMAI CTGCAG 1 cut(s) 702
BspQI GCTCTTC 2 cut(s) 347, 408
BspT104I TTCGAA 1 cut(s) 227
BspTNI GGTCTC 1 cut(s) 478
BsrDI GCAATG 1 cut(s) 587
BsrI ACTGG 3 cut(s) 95, 392, 488
BssMI GATC 4 cut(s) 162, 544, 625, 814
Bst4CI ACNGT 4 cut(s) 169, 325, 618, 664
Bst6I CTCTTC 3 cut(s) 276, 347, 408
BstAPI GCANNNNNTGC 1 cut(s) 755
BstBI TTCGAA 1 cut(s) 227
BstC8I GCNNGC 2 cut(s) 312, 678
BstDEI CTNAG 4 cut(s) 111, 512, 647, 795
BstKTI GATC 4 cut(s) 165, 547, 628, 817
BstMAI GTCTC 1 cut(s) 478
BstMBI GATC 4 cut(s) 162, 544, 625, 814
BstMWI GCNNNNNNNGC 4 cut(s) 264, 343, 586, 755
BstNSI RCATGY 2 cut(s) 208, 680
BstSFI CTRYAG 1 cut(s) 698
BstV1I GCAGC 1 cut(s) 761
BstV2I GAAGAC 1 cut(s) 48
BsuRI GGCC 3 cut(s) 310, 635, 866
BtsI GCAGTG 1 cut(s) 567
BtsIMutI CAGTG 3 cut(s) 165, 567, 621
Cac8I GCNNGC 2 cut(s) 312, 678
CaiI CAGNNNCTG 1 cut(s) 329
Cfr13I GGNCC 1 cut(s) 864
Csp6I GTAC 6 cut(s) 175, 290, 537, 614, 643, 735
CviAII CATG 4 cut(s) 205, 677, 884, 902
CviQI GTAC 6 cut(s) 175, 290, 537, 614, 643, 735
DdeI CTNAG 4 cut(s) 111, 512, 647, 795
DpnI GATC 4 cut(s) 164, 546, 627, 816
DpnII GATC 4 cut(s) 162, 544, 625, 814
EaeI YGGCCR 1 cut(s) 308
Eam1104I CTCTTC 3 cut(s) 276, 347, 408
EarI CTCTTC 3 cut(s) 276, 347, 408
Eco147I AGGCCT 1 cut(s) 635
Eco31I GGTCTC 1 cut(s) 478
Eco57I CTGAAG 2 cut(s) 71, 351
EcoT22I ATGCAT 1 cut(s) 678
FaeI CATG 4 cut(s) 208, 680, 887, 905
FatI CATG 4 cut(s) 204, 676, 883, 901
FbaI TGATCA 2 cut(s) 544, 625
Fnu4HI GCNGC 2 cut(s) 131, 750
Fsp4HI GCNGC 2 cut(s) 131, 750
FspBI CTAG 4 cut(s) 398, 444, 791, 948
GluI GCNGC 2 cut(s) 131, 750
HaeIII GGCC 3 cut(s) 310, 635, 866
Hin1II CATG 4 cut(s) 208, 680, 887, 905
HinfI GANTC 3 cut(s) 4, 79, 718
HphI GGTGA 1 cut(s) 700
Hpy166II GTNNAC 2 cut(s) 621, 667
Hpy188I TCNGA 4 cut(s) 331, 569, 603, 657
Hpy188III TCNNGA 5 cut(s) 68, 548, 740, 797, 820
Hpy8I GTNNAC 2 cut(s) 621, 667
HpyAV CCTTC 4 cut(s) 109, 257, 280, 817
HpyCH4III ACNGT 4 cut(s) 169, 325, 618, 664
HpyCH4V TGCA 9 cut(s) 89, 389, 560, 676, 680, 700, 873, 887, 893
HpyF10VI GCNNNNNNNGC 4 cut(s) 264, 343, 586, 755
HpyF3I CTNAG 4 cut(s) 111, 512, 647, 795
Hsp92II CATG 4 cut(s) 208, 680, 887, 905
Ksp22I TGATCA 2 cut(s) 544, 625
Kzo9I GATC 4 cut(s) 162, 544, 625, 814
LguI GCTCTTC 2 cut(s) 347, 408
LmnI GCTCC 3 cut(s) 31, 319, 586
Lsp1109I GCAGC 1 cut(s) 761
LweI GCATC 3 cut(s) 430, 663, 745
MaeI CTAG 4 cut(s) 398, 444, 791, 948
MaeIII GTNAC 2 cut(s) 471, 784
MalI GATC 4 cut(s) 164, 546, 627, 816
MboI GATC 4 cut(s) 162, 544, 625, 814
MboII GAAGA 6 cut(s) 53, 64, 293, 364, 395, 851
MhlI GDGCHC 1 cut(s) 591
MlsI TGGCCA 1 cut(s) 310
MluCI AATT 4 cut(s) 409, 551, 705, 858
MluNI TGGCCA 1 cut(s) 310
MlyI GAGTC 2 cut(s) 13, 88
MmeI TCCRAC 1 cut(s) 198
MnlI CCTC 9 cut(s) 21, 110, 193, 201, 214, 253, 421, 793, 829
Mox20I TGGCCA 1 cut(s) 310
Mph1103I ATGCAT 1 cut(s) 678
MroXI GAANNNNTTC 2 cut(s) 59, 267
MscI TGGCCA 1 cut(s) 310
MseI TTAA 3 cut(s) 365, 761, 852
MslI CAYNNNNRTG 1 cut(s) 906
Msp20I TGGCCA 1 cut(s) 310
Mva1269I GAATGC 1 cut(s) 267
MwoI GCNNNNNNNGC 4 cut(s) 264, 343, 586, 755
NdeII GATC 4 cut(s) 162, 544, 625, 814
NlaIII CATG 4 cut(s) 208, 680, 887, 905
NmuCI GTSAC 2 cut(s) 471, 784
NsiI ATGCAT 1 cut(s) 678
NspI RCATGY 2 cut(s) 208, 680
NspV TTCGAA 1 cut(s) 227
PaeI GCATGC 1 cut(s) 680
PceI AGGCCT 1 cut(s) 635
PciSI GCTCTTC 2 cut(s) 347, 408
PctI GAATGC 1 cut(s) 267
PdmI GAANNNNTTC 2 cut(s) 59, 267
PfeI GAWTC 1 cut(s) 718
PflFI GACNNNGTC 1 cut(s) 419
PkrI GCNGC 2 cut(s) 132, 751
PleI GAGTC 2 cut(s) 12, 87
PpsI GAGTC 2 cut(s) 12, 87
PspPI GGNCC 1 cut(s) 864
PstI CTGCAG 1 cut(s) 702
PstNI CAGNNNCTG 1 cut(s) 329
PsyI GACNNNGTC 1 cut(s) 419
RsaI GTAC 6 cut(s) 176, 291, 538, 615, 644, 736
RsaNI GTAC 6 cut(s) 175, 290, 537, 614, 643, 735
RseI CAYNNNNRTG 1 cut(s) 906
SapI GCTCTTC 2 cut(s) 347, 408
SaqAI TTAA 3 cut(s) 365, 761, 852
SatI GCNGC 2 cut(s) 131, 750
Sau3AI GATC 4 cut(s) 162, 544, 625, 814
Sau96I GGNCC 1 cut(s) 864
ScaI AGTACT 1 cut(s) 538
SchI GAGTC 2 cut(s) 13, 88
SduI GDGCHC 1 cut(s) 591
SfaNI GCATC 3 cut(s) 430, 663, 745
SfcI CTRYAG 1 cut(s) 698
SfuI TTCGAA 1 cut(s) 227
SmiMI CAYNNNNRTG 1 cut(s) 906
SphI GCATGC 1 cut(s) 680
Sse9I AATT 4 cut(s) 409, 551, 705, 858
SseBI AGGCCT 1 cut(s) 635
SsiI CCGC 2 cut(s) 130, 337
SspMI CTAG 4 cut(s) 398, 444, 791, 948
StuI AGGCCT 1 cut(s) 635
TaaI ACNGT 4 cut(s) 169, 325, 618, 664
TaqI TCGA 4 cut(s) 227, 414, 523, 934
TasI AATT 4 cut(s) 409, 551, 705, 858
TatI WGTACW 3 cut(s) 174, 536, 613
TauI GCSGC 1 cut(s) 133
TfiI GAWTC 1 cut(s) 718
Tru1I TTAA 3 cut(s) 365, 761, 852
Tru9I TTAA 3 cut(s) 365, 761, 852
TscAI CASTG 3 cut(s) 172, 567, 628
TseFI GTSAC 2 cut(s) 471, 784
TseI GCWGC 1 cut(s) 749
Tsp45I GTSAC 2 cut(s) 471, 784
TspDTI ATGAA 2 cut(s) 52, 294
TspRI CASTG 3 cut(s) 172, 567, 628
Tth111I GACNNNGTC 1 cut(s) 419
XapI RAATTY 3 cut(s) 551, 705, 858
XceI RCATGY 2 cut(s) 208, 680
XcmI CCANNNNNNNNNTGG 1 cut(s) 908
XmnI GAANNNNTTC 2 cut(s) 59, 267
XspI CTAG 4 cut(s) 398, 444, 791, 948
ZrmI AGTACT 1 cut(s) 538
Zsp2I ATGCAT 1 cut(s) 678
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.