Rroxscaffold_6G00399720

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000291
Physical Location & Seq
Reverse (-)
21768201 .. 21774689
6489 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00399720.1

Sequence Viewer

Length: 390 bp
ATGGGTGTAGTTACGAAATCAGATATTGAAGCTCTTACAGCAGCGTTTACCGCTGCCATCAATTCCATGAATAATCGGATTGGAGAAATTCGTGGATTGTTGGGTGAGAGGAACAACAACAACAACAATAATCGGCATAGAGGTGGGGAAGGAGGCCAGCGAGTTAGGGCTCCACGTGCCTCTTACTATCGTGTTCACGCTTCCCGCGTCGGTTGGTATCAAAGCGGGTATCGCCCGCTTCTTAGCGACGACGATCCAAGGGAGAAGTTCACTACCACCAACCTCAACGACGCTGGTCCTGTGTTCTCCGCTCTCACCTTCAACAAGCACATCGCTTCCTTCCCATCCTTTCTTTGCTTCCATGCCAATCTAAATGGTCCCGATGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

14.25

Weight (kDa)

9.64

Isoelectric Point (pI)

27.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000291)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00860
fragaria_vesca FvH4_1g23712 FvH4_1g29809 FvH4_1g29810 FvH4_2g02661 FvH4_2g13451 FvH4_2g17921 FvH4_2g17922 FvH4_2g19251 FvH4_2g19252 FvH4_2g28221 FvH4_2g35961 FvH4_3g10372 FvH4_3g12461 FvH4_3g12461 FvH4_3g27861 FvH4_3g34591 FvH4_3g40201 FvH4_3g44612 FvH4_4g08352 FvH4_4g12251 FvH4_4g12742 FvH4_4g13904 FvH4_4g14287 FvH4_4g15243 FvH4_4g24071 FvH4_4g33448 FvH4_5g21912 FvH4_5g39371 FvH4_6g14992 FvH4_6g15221 FvH4_6g20603 FvH4_6g31093 FvH4_6g32372 FvH4_6g33012
malus_domestica MD11G1009100.v1.1 MD13G1145000.v1.1 MD16G1138700.v1.1
prunus_persica Prupe.5G246300_v2.0.a1 Prupe.7G034800_v2.0.a1 Prupe.8G084500_v2.0.a1
pyrus_communis pycom01g18240 pycom04g00330 pycom05g09010 pycom06g01670 pycom06g01690 pycom06g07180 pycom06g11620 pycom10g05720 pycom1134g00040 pycom1134g00060 pycom12486g00010 pycom12555g00230 pycom13g21670 pycom13g23130 pycom13g23140 pycom14g10580
rosa_chinensis RchiOBHm_Chr1g0330691 RchiOBHm_Chr2g0106171 RchiOBHm_Chr2g0134731 RchiOBHm_Chr2g0142791 RchiOBHm_Chr2g0149861 RchiOBHm_Chr3g0452401 RchiOBHm_Chr3g0461881 RchiOBHm_Chr4g0401341 RchiOBHm_Chr5g0075641 RchiOBHm_Chr6g0265961 RchiOBHm_Chr7g0200201 RchiOBHm_Chr7g0237811
rosa_laevigata RLG00000002773
rosa_multiflora Rmu_co8037806.1_g000001 Rmu_co8445989.1_g000001 Rmu_sc0000745.1_g000039 Rmu_sc0004448.1_g000029 Rmu_sc0004488.1_g000002 Rmu_sc0004591.1_g000018 Rmu_sc0005065.1_g000030 Rmu_sc0005150.1_g000005 Rmu_sc0005654.1_g000011 Rmu_sc0006986.1_g000016
rosa_roxburghii Rroxscaffold_164G00436490 Rroxscaffold_175G00432490 Rroxscaffold_1G00059440 Rroxscaffold_1G00064410 Rroxscaffold_2G00100310 Rroxscaffold_2G00128170 Rroxscaffold_3G00239420 Rroxscaffold_3G00264970 Rroxscaffold_3G00271550 Rroxscaffold_4G00300240 Rroxscaffold_5G00385050 Rroxscaffold_6G00399720
rosa_rugosa Rorug02G0252200
rosa_samantha Rh2DG251900 Rh7CG329900
rosa_wichuraiana Rw0G004800 Rw1G000850 Rw1G022350 Rw2G027030 Rw2G027760 Rw2G028410 Rw2G029130 Rw2G029390 Rw2G032490 Rw2G039460 Rw2G047800 Rw2G050340 Rw3G026430 Rw4G018370 Rw4G030750 Rw4G033140 Rw5G011950 Rw5G012010 Rw5G029280 Rw5G040190 Rw5G044570 Rw5G048240 Rw6G000340 Rw6G010140 Rw6G026480 Rw7G033750 Rw7G037250 Rw7G042080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 311
AccII CGCG 1 cut(s) 207
AciI CCGC 5 cut(s) 51, 205, 225, 236, 309
AclWI GGATC 1 cut(s) 248
AcsI RAATTY 1 cut(s) 87
AcvI CACGTG 1 cut(s) 176
AgsI TTSAA 2 cut(s) 29, 322
AluBI AGCT 1 cut(s) 32
AluI AGCT 1 cut(s) 32
AlwI GGATC 1 cut(s) 248
AoxI GGCC 1 cut(s) 154
ApeKI GCWGC 2 cut(s) 41, 53
ApoI RAATTY 1 cut(s) 87
AspS9I GGNCC 2 cut(s) 296, 377
AsuHPI GGTGA 2 cut(s) 116, 307
AvaII GGWCC 2 cut(s) 296, 377
BanII GRGCYC 1 cut(s) 172
BbrPI CACGTG 1 cut(s) 176
BbvI GCAGC 2 cut(s) 40, 53
BccI CCATC 2 cut(s) 65, 352
BisI GCNGC 2 cut(s) 42, 54
BlsI GCNGC 2 cut(s) 43, 55
Bme18I GGWCC 2 cut(s) 296, 377
BmgT120I GGNCC 2 cut(s) 296, 377
BmiI GGNNCC 2 cut(s) 171, 379
BoxI GACNNNNGTC 1 cut(s) 294
BsaAI YACGTR 1 cut(s) 176
BsaJI CCNNGG 1 cut(s) 257
BseDI CCNNGG 1 cut(s) 257
BseGI GGATG 1 cut(s) 344
BseXI GCAGC 2 cut(s) 40, 53
Bsh1236I CGCG 1 cut(s) 207
BshFI GGCC 1 cut(s) 156
BslFI GGGAC 1 cut(s) 363
BsmFI GGGAC 1 cut(s) 363
BsnI GGCC 1 cut(s) 156
Bsp1286I GDGCHC 1 cut(s) 172
Bsp143I GATC 1 cut(s) 253
BspACI CCGC 5 cut(s) 51, 205, 225, 236, 309
BspANI GGCC 1 cut(s) 156
BspFNI CGCG 1 cut(s) 207
BspLI GGNNCC 2 cut(s) 171, 379
BspPI GGATC 1 cut(s) 248
BsrBI CCGCTC 1 cut(s) 311
BssECI CCNNGG 1 cut(s) 257
BssMI GATC 1 cut(s) 253
BssT1I CCWWGG 1 cut(s) 257
BstBAI YACGTR 1 cut(s) 176
BstC8I GCNNGC 2 cut(s) 158, 236
BstDEI CTNAG 1 cut(s) 242
BstF5I GGATG 1 cut(s) 344
BstFNI CGCG 1 cut(s) 207
BstKTI GATC 1 cut(s) 256
BstMBI GATC 1 cut(s) 253
BstMWI GCNNNNNNNGC 4 cut(s) 38, 50, 176, 231
BstPAI GACNNNNGTC 1 cut(s) 294
BstUI CGCG 1 cut(s) 207
BstV1I GCAGC 2 cut(s) 40, 53
BsuRI GGCC 1 cut(s) 156
BtgZI GCGATG 1 cut(s) 316
BtsCI GGATG 1 cut(s) 344
Cac8I GCNNGC 2 cut(s) 158, 236
Cfr13I GGNCC 2 cut(s) 296, 377
CseI GACGC 2 cut(s) 196, 299
CviAII CATG 2 cut(s) 67, 362
CviJI RGCY 3 cut(s) 32, 156, 170
CviKI_1 RGCY 3 cut(s) 32, 156, 170
DdeI CTNAG 1 cut(s) 242
DpnI GATC 1 cut(s) 255
DpnII GATC 1 cut(s) 253
Eco130I CCWWGG 1 cut(s) 257
Eco24I GRGCYC 1 cut(s) 172
Eco47I GGWCC 2 cut(s) 296, 377
Eco72I CACGTG 1 cut(s) 176
EcoT14I CCWWGG 1 cut(s) 257
EcoT38I GRGCYC 1 cut(s) 172
ErhI CCWWGG 1 cut(s) 257
FaeI CATG 2 cut(s) 70, 365
FaiI YATR 3 cut(s) 68, 138, 363
FaqI GGGAC 1 cut(s) 363
FatI CATG 2 cut(s) 66, 361
FauI CCCGC 3 cut(s) 212, 218, 243
Fnu4HI GCNGC 2 cut(s) 42, 54
FokI GGATG 1 cut(s) 331
FriOI GRGCYC 1 cut(s) 172
Fsp4HI GCNGC 2 cut(s) 42, 54
GluI GCNGC 2 cut(s) 42, 54
HaeIII GGCC 1 cut(s) 156
HgaI GACGC 2 cut(s) 196, 299
Hin1II CATG 2 cut(s) 70, 365
HphI GGTGA 2 cut(s) 116, 307
Hpy166II GTNNAC 3 cut(s) 48, 196, 270
Hpy188I TCNGA 2 cut(s) 22, 78
Hpy188III TCNNGA 1 cut(s) 380
Hpy8I GTNNAC 3 cut(s) 48, 196, 270
Hpy99I CGWCG 4 cut(s) 212, 251, 254, 293
HpyAV CCTTC 3 cut(s) 143, 328, 349
HpyCH4IV ACGT 1 cut(s) 175
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 50, 176, 231
HpyF3I CTNAG 1 cut(s) 242
HpySE526I ACGT 1 cut(s) 175
Hsp92II CATG 2 cut(s) 70, 365
Kzo9I GATC 1 cut(s) 253
LmnI GCTCC 1 cut(s) 175
LpnPI CCDG 3 cut(s) 170, 279, 312
Lsp1109I GCAGC 2 cut(s) 40, 53
MaeII ACGT 1 cut(s) 175
MaeIII GTNAC 1 cut(s) 10
MalI GATC 1 cut(s) 255
MbiI CCGCTC 1 cut(s) 311
MboI GATC 1 cut(s) 253
MhlI GDGCHC 1 cut(s) 172
MluCI AATT 2 cut(s) 61, 87
MnlI CCTC 5 cut(s) 102, 134, 146, 190, 293
MslI CAYNNNNRTG 1 cut(s) 141
MspA1I CMGCKG 1 cut(s) 53
MvnI CGCG 1 cut(s) 207
MwoI GCNNNNNNNGC 4 cut(s) 38, 50, 176, 231
NdeII GATC 1 cut(s) 253
NlaIII CATG 2 cut(s) 70, 365
NlaIV GGNNCC 2 cut(s) 171, 379
PcsI WCGNNNNNNNCGW 1 cut(s) 204
PkrI GCNGC 2 cut(s) 43, 55
PmaCI CACGTG 1 cut(s) 176
PmlI CACGTG 1 cut(s) 176
Ppu21I YACGTR 1 cut(s) 176
PshAI GACNNNNGTC 1 cut(s) 294
PspCI CACGTG 1 cut(s) 176
PspN4I GGNNCC 2 cut(s) 171, 379
PspPI GGNCC 2 cut(s) 296, 377
RseI CAYNNNNRTG 1 cut(s) 141
SatI GCNGC 2 cut(s) 42, 54
Sau3AI GATC 1 cut(s) 253
Sau96I GGNCC 2 cut(s) 296, 377
SduI GDGCHC 1 cut(s) 172
SetI ASST 5 cut(s) 34, 145, 178, 285, 320
SinI GGWCC 2 cut(s) 296, 377
SmiMI CAYNNNNRTG 1 cut(s) 141
Sse9I AATT 2 cut(s) 61, 87
SsiI CCGC 5 cut(s) 51, 205, 225, 236, 309
StyI CCWWGG 1 cut(s) 257
TaiI ACGT 1 cut(s) 178
TasI AATT 2 cut(s) 61, 87
TseI GCWGC 2 cut(s) 41, 53
TspDTI ATGAA 1 cut(s) 83
VpaK11BI GGWCC 2 cut(s) 296, 377
XapI RAATTY 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.