Rroxscaffold_4G00300240

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000291
Physical Location & Seq
Reverse (-)
20462601 .. 20463785
1185 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00300240.1

Sequence Viewer

Length: 198 bp
ATGAGATTAATAGTGATCAAGTGGCAGACACCTGTTGAGAATAATGAAATTCGTGGATTGTTGGGTGAGAGGAATAACAACAACAACAACAATAATCGGCATAGAGGTGGGGAAGGAGGCCAGCGAGTTAGGGCTCCACGTGGTGAAGTTGTTGTTAATACTTCGAGTTTAAGTCGAAGAAGAAATTGTGCAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

65

Amino Acids

7.38

Weight (kDa)

11.76

Isoelectric Point (pI)

38.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000291)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00860
fragaria_vesca FvH4_1g23712 FvH4_1g29809 FvH4_1g29810 FvH4_2g02661 FvH4_2g13451 FvH4_2g17921 FvH4_2g17922 FvH4_2g19251 FvH4_2g19252 FvH4_2g28221 FvH4_2g35961 FvH4_3g10372 FvH4_3g12461 FvH4_3g12461 FvH4_3g27861 FvH4_3g34591 FvH4_3g40201 FvH4_3g44612 FvH4_4g08352 FvH4_4g12251 FvH4_4g12742 FvH4_4g13904 FvH4_4g14287 FvH4_4g15243 FvH4_4g24071 FvH4_4g33448 FvH4_5g21912 FvH4_5g39371 FvH4_6g14992 FvH4_6g15221 FvH4_6g20603 FvH4_6g31093 FvH4_6g32372 FvH4_6g33012
malus_domestica MD11G1009100.v1.1 MD13G1145000.v1.1 MD16G1138700.v1.1
prunus_persica Prupe.5G246300_v2.0.a1 Prupe.7G034800_v2.0.a1 Prupe.8G084500_v2.0.a1
pyrus_communis pycom01g18240 pycom04g00330 pycom05g09010 pycom06g01670 pycom06g01690 pycom06g07180 pycom06g11620 pycom10g05720 pycom1134g00040 pycom1134g00060 pycom12486g00010 pycom12555g00230 pycom13g21670 pycom13g23130 pycom13g23140 pycom14g10580
rosa_chinensis RchiOBHm_Chr1g0330691 RchiOBHm_Chr2g0106171 RchiOBHm_Chr2g0134731 RchiOBHm_Chr2g0142791 RchiOBHm_Chr2g0149861 RchiOBHm_Chr3g0452401 RchiOBHm_Chr3g0461881 RchiOBHm_Chr4g0401341 RchiOBHm_Chr5g0075641 RchiOBHm_Chr6g0265961 RchiOBHm_Chr7g0200201 RchiOBHm_Chr7g0237811
rosa_laevigata RLG00000002773
rosa_multiflora Rmu_co8037806.1_g000001 Rmu_co8445989.1_g000001 Rmu_sc0000745.1_g000039 Rmu_sc0004448.1_g000029 Rmu_sc0004488.1_g000002 Rmu_sc0004591.1_g000018 Rmu_sc0005065.1_g000030 Rmu_sc0005150.1_g000005 Rmu_sc0005654.1_g000011 Rmu_sc0006986.1_g000016
rosa_roxburghii Rroxscaffold_164G00436490 Rroxscaffold_175G00432490 Rroxscaffold_1G00059440 Rroxscaffold_1G00064410 Rroxscaffold_2G00100310 Rroxscaffold_2G00128170 Rroxscaffold_3G00239420 Rroxscaffold_3G00264970 Rroxscaffold_3G00271550 Rroxscaffold_4G00300240 Rroxscaffold_5G00385050 Rroxscaffold_6G00399720
rosa_rugosa Rorug02G0252200
rosa_samantha Rh2DG251900 Rh7CG329900
rosa_wichuraiana Rw0G004800 Rw1G000850 Rw1G022350 Rw2G027030 Rw2G027760 Rw2G028410 Rw2G029130 Rw2G029390 Rw2G032490 Rw2G039460 Rw2G047800 Rw2G050340 Rw3G026430 Rw4G018370 Rw4G030750 Rw4G033140 Rw5G011950 Rw5G012010 Rw5G029280 Rw5G040190 Rw5G044570 Rw5G048240 Rw6G000340 Rw6G010140 Rw6G026480 Rw7G033750 Rw7G037250 Rw7G042080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 48
AcvI CACGTG 1 cut(s) 140
AdeI CACNNNGTG 1 cut(s) 143
AoxI GGCC 1 cut(s) 118
ApoI RAATTY 1 cut(s) 48
AseI ATTAAT 1 cut(s) 8
AsuHPI GGTGA 2 cut(s) 77, 155
BanII GRGCYC 1 cut(s) 136
BbrPI CACGTG 1 cut(s) 140
BclI TGATCA 1 cut(s) 15
BmiI GGNNCC 1 cut(s) 135
BsaAI YACGTR 1 cut(s) 140
BshFI GGCC 1 cut(s) 120
BsnI GGCC 1 cut(s) 120
Bsp1286I GDGCHC 1 cut(s) 136
Bsp143I GATC 1 cut(s) 15
BspANI GGCC 1 cut(s) 120
BspLI GGNNCC 1 cut(s) 135
BssMI GATC 1 cut(s) 15
BstBAI YACGTR 1 cut(s) 140
BstC8I GCNNGC 1 cut(s) 122
BstKTI GATC 1 cut(s) 18
BstMBI GATC 1 cut(s) 15
BsuRI GGCC 1 cut(s) 120
Cac8I GCNNGC 1 cut(s) 122
CviAII CATG 1 cut(s) 195
CviJI RGCY 2 cut(s) 120, 134
CviKI_1 RGCY 2 cut(s) 120, 134
DpnI GATC 1 cut(s) 17
DpnII GATC 1 cut(s) 15
DraIII CACNNNGTG 1 cut(s) 143
Eco24I GRGCYC 1 cut(s) 136
Eco72I CACGTG 1 cut(s) 140
EcoT38I GRGCYC 1 cut(s) 136
FaeI CATG 1 cut(s) 198
FaiI YATR 2 cut(s) 102, 196
FatI CATG 1 cut(s) 194
FbaI TGATCA 1 cut(s) 15
FriOI GRGCYC 1 cut(s) 136
HaeIII GGCC 1 cut(s) 120
Hin1II CATG 1 cut(s) 198
HphI GGTGA 2 cut(s) 77, 155
HpyAV CCTTC 1 cut(s) 107
HpyCH4IV ACGT 1 cut(s) 139
HpyCH4V TGCA 1 cut(s) 191
HpySE526I ACGT 1 cut(s) 139
Hsp92II CATG 1 cut(s) 198
Ksp22I TGATCA 1 cut(s) 15
Kzo9I GATC 1 cut(s) 15
LmnI GCTCC 1 cut(s) 139
LpnPI CCDG 2 cut(s) 45, 134
MaeII ACGT 1 cut(s) 139
MalI GATC 1 cut(s) 17
MboI GATC 1 cut(s) 15
MboII GAAGA 2 cut(s) 189, 192
MhlI GDGCHC 1 cut(s) 136
MluCI AATT 2 cut(s) 48, 184
MnlI CCTC 3 cut(s) 63, 98, 110
MseI TTAA 3 cut(s) 8, 156, 170
MslI CAYNNNNRTG 1 cut(s) 105
NdeII GATC 1 cut(s) 15
NlaIII CATG 1 cut(s) 198
NlaIV GGNNCC 1 cut(s) 135
PmaCI CACGTG 1 cut(s) 140
PmlI CACGTG 1 cut(s) 140
Ppu21I YACGTR 1 cut(s) 140
PshBI ATTAAT 1 cut(s) 8
PspCI CACGTG 1 cut(s) 140
PspN4I GGNNCC 1 cut(s) 135
RseI CAYNNNNRTG 1 cut(s) 105
SaqAI TTAA 3 cut(s) 8, 156, 170
Sau3AI GATC 1 cut(s) 15
SduI GDGCHC 1 cut(s) 136
SetI ASST 3 cut(s) 34, 109, 142
SgeI CNNG 8 cut(s) 31, 44, 65, 133, 137, 150, 152, 177
SmiMI CAYNNNNRTG 1 cut(s) 105
Sse9I AATT 2 cut(s) 48, 184
TaiI ACGT 1 cut(s) 142
TaqI TCGA 2 cut(s) 164, 175
TasI AATT 2 cut(s) 48, 184
Tru1I TTAA 3 cut(s) 8, 156, 170
Tru9I TTAA 3 cut(s) 8, 156, 170
TspDTI ATGAA 1 cut(s) 60
VspI ATTAAT 1 cut(s) 8
XapI RAATTY 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.