RchiOBHm_Chr1g0330691
ERF Family

DNA RNA polymerases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000291
Physical Location & Seq
Forward (+)
20492322 .. 20493462
1141 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55983

Sequence Viewer

Length: 1092 bp
ATGTTTGATGAGTTTAGTGACGTTGTCATTGAAGAAATTCCTGCTGGACTTCCCCCAATGAGAGGGATCCAACACCATATTGATTTTGTTCCAGGAGCTGTCATTCCTAACAAGGCAGCGTACCGCATGAATCCTAAGGAATTTGAAGAATTGCAAAGGCAAGTACATGAGTTGATGTCTAAGGGCTTAATAAGGGAAAGCATGAGTCCATGTGCTGTACCAGCTTTACTTGTACCTAAGAAGGACGGATCATGGAGGATGTGTGTGGACAGTAGAGCAGTGAATAAAATCACCATCAAGTATCGATTCCCTATTCCTCGGTTTGATGATCTACTTGACCAACTTCATGGAGCTACAATCTTCTCCAAGATTGATTTACGAAGTGGTTATCATCAAATTCGCATGAGACCAGGAGATGAGTGGAAGACTGCTTTCAAGACTAGAGATGGTTTGTATGAATGGATGGTGATGCCTTTTGGATTGTCTAATGCTCCTAGCACGTTCATGAGGCTTATGAATCACATTTTAAAGTCTTTTATTGGTCAATTTGTGGTTGTCTACTTTGACGACATTCTCATTTACAGCAAAGACCAAAGTTCACATCTTAGACACCTACAACAAGTGATGCAGATGTTACGGGAGGAAAAGCTATTTGTGAACCTAAAGAAGTGTGAGTTTCTGACCTCTCAATTAATTTTTTTGGGATATGTAATCTCCTGCAACGGAATCACAATGGATCCAACCAAGGTTGAGGCAATTGTCAATTGGCCTATTCCTGCTACACTTCATGACATTAGAAGCTTCCATGGTTTAGCATCTTTTTATCAACGATTCATTAAGGGATTCAGCACCATCATAGCTCCAATAACAGAATGTTTAAAAGGGGGAAGATTTCAGTGGAAGACAAAAGCACAGCAGAGTTTTGAGTTGATAAAGAAAAAAATGACAGAAGCCCCAATCTTAGTGCTTCCTGATTTCAGCAAGGTTTTTGAAGTAGATTGTGATGCTTCGAATGTGGGGATTGGCGCTGTCCTCAGCCAAGAGGGTACTCTACTTATGATAAAGAATTCTATGCCATTATTCGAGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 Retrotrans_gag zf-CCHC zf-H2C2

Protein Analysis

363

Amino Acids

41.62

Weight (kDa)

8.61

Isoelectric Point (pI)

42.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_1 PF00078 78 - 238 6.8e-45 Reverse transcriptase (RNA-dependent DNA polymerase)
RT_RNaseH_2 PF17919 300 - 349 2.3e-14 RNase H-like domain found in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000291)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00860
fragaria_vesca FvH4_1g23712 FvH4_1g29809 FvH4_1g29810 FvH4_2g02661 FvH4_2g13451 FvH4_2g17921 FvH4_2g17922 FvH4_2g19251 FvH4_2g19252 FvH4_2g28221 FvH4_2g35961 FvH4_3g10372 FvH4_3g12461 FvH4_3g12461 FvH4_3g27861 FvH4_3g34591 FvH4_3g40201 FvH4_3g44612 FvH4_4g08352 FvH4_4g12251 FvH4_4g12742 FvH4_4g13904 FvH4_4g14287 FvH4_4g15243 FvH4_4g24071 FvH4_4g33448 FvH4_5g21912 FvH4_5g39371 FvH4_6g14992 FvH4_6g15221 FvH4_6g20603 FvH4_6g31093 FvH4_6g32372 FvH4_6g33012
malus_domestica MD11G1009100.v1.1 MD13G1145000.v1.1 MD16G1138700.v1.1
prunus_persica Prupe.5G246300_v2.0.a1 Prupe.7G034800_v2.0.a1 Prupe.8G084500_v2.0.a1
pyrus_communis pycom01g18240 pycom04g00330 pycom05g09010 pycom06g01670 pycom06g01690 pycom06g07180 pycom06g11620 pycom10g05720 pycom1134g00040 pycom1134g00060 pycom12486g00010 pycom12555g00230 pycom13g21670 pycom13g23130 pycom13g23140 pycom14g10580
rosa_chinensis RchiOBHm_Chr1g0330691 RchiOBHm_Chr2g0106171 RchiOBHm_Chr2g0134731 RchiOBHm_Chr2g0142791 RchiOBHm_Chr2g0149861 RchiOBHm_Chr3g0452401 RchiOBHm_Chr3g0461881 RchiOBHm_Chr4g0401341 RchiOBHm_Chr5g0075641 RchiOBHm_Chr6g0265961 RchiOBHm_Chr7g0200201 RchiOBHm_Chr7g0237811
rosa_laevigata RLG00000002773
rosa_multiflora Rmu_co8037806.1_g000001 Rmu_co8445989.1_g000001 Rmu_sc0000745.1_g000039 Rmu_sc0004448.1_g000029 Rmu_sc0004488.1_g000002 Rmu_sc0004591.1_g000018 Rmu_sc0005065.1_g000030 Rmu_sc0005150.1_g000005 Rmu_sc0005654.1_g000011 Rmu_sc0006986.1_g000016
rosa_roxburghii Rroxscaffold_164G00436490 Rroxscaffold_175G00432490 Rroxscaffold_1G00059440 Rroxscaffold_1G00064410 Rroxscaffold_2G00100310 Rroxscaffold_2G00128170 Rroxscaffold_3G00239420 Rroxscaffold_3G00264970 Rroxscaffold_3G00271550 Rroxscaffold_4G00300240 Rroxscaffold_5G00385050 Rroxscaffold_6G00399720
rosa_rugosa Rorug02G0252200
rosa_samantha Rh2DG251900 Rh7CG329900
rosa_wichuraiana Rw0G004800 Rw1G000850 Rw1G022350 Rw2G027030 Rw2G027760 Rw2G028410 Rw2G029130 Rw2G029390 Rw2G032490 Rw2G039460 Rw2G047800 Rw2G050340 Rw3G026430 Rw4G018370 Rw4G030750 Rw4G033140 Rw5G011950 Rw5G012010 Rw5G029280 Rw5G040190 Rw5G044570 Rw5G048240 Rw6G000340 Rw6G010140 Rw6G026480 Rw7G033750 Rw7G037250 Rw7G042080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 558
AciI CCGC 1 cut(s) 124
AclWI GGATC 5 cut(s) 61, 74, 256, 731, 744
AcsI RAATTY 4 cut(s) 36, 140, 396, 1066
AfaI GTAC 5 cut(s) 122, 165, 219, 234, 1048
AfiI CCNNNNNNNGG 1 cut(s) 62
AgsI TTSAA 4 cut(s) 32, 146, 436, 992
AjnI CCWGG 2 cut(s) 91, 409
AluBI AGCT 7 cut(s) 98, 224, 353, 649, 801, 860, 1087
AluI AGCT 7 cut(s) 98, 224, 353, 649, 801, 860, 1087
Alw26I GTCTC 1 cut(s) 400
AlwI GGATC 5 cut(s) 61, 74, 256, 731, 744
AlwNI CAGNNNCTG 1 cut(s) 98
AoxI GGCC 1 cut(s) 767
ApeKI GCWGC 1 cut(s) 116
ApoI RAATTY 4 cut(s) 36, 140, 396, 1066
AseI ATTAAT 1 cut(s) 692
Asp700I GAANNNNTTC 1 cut(s) 36
AspLEI GCGC 1 cut(s) 1028
AsuHPI GGTGA 2 cut(s) 283, 478
AsuII TTCGAA 1 cut(s) 1010
AxyI CCTNAGG 1 cut(s) 135
BamHI GGATCC 2 cut(s) 66, 736
BbsI GAAGAC 2 cut(s) 431, 908
BbvCI CCTCAGC 1 cut(s) 1034
BbvI GCAGC 1 cut(s) 128
BccI CCATC 4 cut(s) 302, 440, 457, 860
BciT130I CCWGG 2 cut(s) 93, 411
BcoDI GTCTC 1 cut(s) 400
BfaI CTAG 2 cut(s) 441, 495
BfoI RGCGCY 1 cut(s) 1029
BisI GCNGC 1 cut(s) 117
BlsI GCNGC 1 cut(s) 118
Bme1390I CCNGG 2 cut(s) 93, 411
BmiI GGNNCC 2 cut(s) 68, 738
BmrFI CCNGG 2 cut(s) 93, 411
BmsI GCATC 4 cut(s) 459, 615, 824, 994
BpiI GAAGAC 2 cut(s) 431, 908
Bpu10I CCTNAGC 1 cut(s) 1034
Bpu14I TTCGAA 1 cut(s) 1010
Bsa29I ATCGAT 1 cut(s) 304
BsaI GGTCTC 1 cut(s) 400
BsaJI CCNNGG 3 cut(s) 317, 744, 805
BsaXI ACNNNNNCTCC 2 cut(s) 247, 277
Bsc4I CCNNNNNNNGG 1 cut(s) 62
Bse21I CCTNAGG 1 cut(s) 135
BseBI CCWGG 2 cut(s) 93, 411
BseCI ATCGAT 1 cut(s) 304
BseDI CCNNGG 3 cut(s) 317, 744, 805
BseGI GGATG 2 cut(s) 264, 468
BseLI CCNNNNNNNGG 1 cut(s) 62
BseMII CTCAG 1 cut(s) 1048
BseXI GCAGC 1 cut(s) 128
BshFI GGCC 1 cut(s) 769
BshVI ATCGAT 1 cut(s) 304
BslI CCNNNNNNNGG 1 cut(s) 62
BsmAI GTCTC 1 cut(s) 400
BsnI GGCC 1 cut(s) 769
Bso31I GGTCTC 1 cut(s) 400
Bsp119I TTCGAA 1 cut(s) 1010
Bsp143I GATC 4 cut(s) 66, 248, 328, 736
Bsp19I CCATGG 1 cut(s) 805
BspACI CCGC 1 cut(s) 124
BspANI GGCC 1 cut(s) 769
BspCNI CTCAG 1 cut(s) 1047
BspDI ATCGAT 1 cut(s) 304
BspHI TCATGA 2 cut(s) 504, 787
BspLI GGNNCC 2 cut(s) 68, 738
BspPI GGATC 5 cut(s) 61, 74, 256, 731, 744
BspT104I TTCGAA 1 cut(s) 1010
BspTNI GGTCTC 1 cut(s) 400
BssECI CCNNGG 3 cut(s) 317, 744, 805
BssMI GATC 4 cut(s) 66, 248, 328, 736
BssT1I CCWWGG 2 cut(s) 744, 805
Bst2UI CCWGG 2 cut(s) 93, 411
Bst4CI ACNGT 1 cut(s) 272
BstBI TTCGAA 1 cut(s) 1010
BstDEI CTNAG 6 cut(s) 135, 180, 237, 605, 961, 1034
BstDSI CCRYGG 1 cut(s) 805
BstF5I GGATG 2 cut(s) 264, 468
BstH2I RGCGCY 1 cut(s) 1029
BstHHI GCGC 1 cut(s) 1028
BstKTI GATC 4 cut(s) 69, 251, 331, 739
BstMAI GTCTC 1 cut(s) 400
BstMBI GATC 4 cut(s) 66, 248, 328, 736
BstMWI GCNNNNNNNGC 1 cut(s) 221
BstNI CCWGG 2 cut(s) 93, 411
BstSCI CCNGG 2 cut(s) 91, 409
BstV1I GCAGC 1 cut(s) 128
BstV2I GAAGAC 2 cut(s) 431, 908
BstX2I RGATCY 2 cut(s) 66, 736
BstXI CCANNNNNNTGG 1 cut(s) 347
BstYI RGATCY 2 cut(s) 66, 736
Bsu15I ATCGAT 1 cut(s) 304
Bsu36I CCTNAGG 1 cut(s) 135
BsuRI GGCC 1 cut(s) 769
BsuTUI ATCGAT 1 cut(s) 304
BtgI CCRYGG 1 cut(s) 805
BtsCI GGATG 2 cut(s) 264, 468
BtsI GCAGTG 1 cut(s) 285
BtsIMutI CAGTG 2 cut(s) 285, 902
CaiI CAGNNNCTG 1 cut(s) 98
CciI TCATGA 2 cut(s) 504, 787
CfoI GCGC 1 cut(s) 1028
ClaI ATCGAT 1 cut(s) 304
Csp6I GTAC 5 cut(s) 121, 164, 218, 233, 1047
CviQI GTAC 5 cut(s) 121, 164, 218, 233, 1047
DdeI CTNAG 6 cut(s) 135, 180, 237, 605, 961, 1034
DpnI GATC 4 cut(s) 68, 250, 330, 738
DpnII GATC 4 cut(s) 66, 248, 328, 736
DraI TTTAAA 2 cut(s) 528, 879
Eco130I CCWWGG 2 cut(s) 744, 805
Eco31I GGTCTC 1 cut(s) 400
Eco81I CCTNAGG 1 cut(s) 135
EcoRI GAATTC 1 cut(s) 1066
EcoRII CCWGG 2 cut(s) 91, 409
EcoT14I CCWWGG 2 cut(s) 744, 805
ErhI CCWWGG 2 cut(s) 744, 805
FblI GTMKAC 1 cut(s) 558
Fnu4HI GCNGC 1 cut(s) 117
FokI GGATG 2 cut(s) 271, 475
Fsp4HI GCNGC 1 cut(s) 117
FspBI CTAG 2 cut(s) 441, 495
GlaI GCGC 1 cut(s) 1027
GluI GCNGC 1 cut(s) 117
HaeII RGCGCY 1 cut(s) 1029
HaeIII GGCC 1 cut(s) 769
HhaI GCGC 1 cut(s) 1028
Hin6I GCGC 1 cut(s) 1026
HinP1I GCGC 1 cut(s) 1026
HindIII AAGCTT 1 cut(s) 799
HinfI GANTC 7 cut(s) 130, 205, 306, 517, 726, 831, 843
HphI GGTGA 2 cut(s) 283, 478
Hpy166II GTNNAC 4 cut(s) 268, 559, 599, 658
Hpy188I TCNGA 1 cut(s) 681
Hpy188III TCNNGA 4 cut(s) 436, 505, 788, 971
Hpy8I GTNNAC 4 cut(s) 268, 559, 599, 658
HpyAV CCTTC 1 cut(s) 235
HpyCH4III ACNGT 1 cut(s) 272
HpyCH4IV ACGT 2 cut(s) 21, 500
HpyCH4V TGCA 3 cut(s) 154, 628, 720
HpyF10VI GCNNNNNNNGC 1 cut(s) 221
HpyF3I CTNAG 6 cut(s) 135, 180, 237, 605, 961, 1034
HpySE526I ACGT 2 cut(s) 21, 500
HspAI GCGC 1 cut(s) 1026
Kzo9I GATC 4 cut(s) 66, 248, 328, 736
LmnI GCTCC 4 cut(s) 95, 350, 496, 865
Lsp1109I GCAGC 1 cut(s) 128
LweI GCATC 4 cut(s) 459, 615, 824, 994
MaeI CTAG 2 cut(s) 441, 495
MaeII ACGT 2 cut(s) 21, 500
MaeIII GTNAC 2 cut(s) 17, 633
MalI GATC 4 cut(s) 68, 250, 330, 738
MboI GATC 4 cut(s) 66, 248, 328, 736
MboII GAAGA 6 cut(s) 44, 158, 352, 436, 900, 913
MfeI CAATTG 2 cut(s) 756, 763
MflI RGATCY 2 cut(s) 66, 736
MlyI GAGTC 1 cut(s) 214
MmeI TCCRAC 2 cut(s) 94, 764
MnlI CCTC 9 cut(s) 56, 249, 327, 501, 634, 694, 745, 1036, 1043
MroXI GAANNNNTTC 1 cut(s) 36
MseI TTAA 6 cut(s) 188, 527, 692, 837, 878, 1090
MslI CAYNNNNRTG 1 cut(s) 503
MspR9I CCNGG 2 cut(s) 93, 411
MunI CAATTG 2 cut(s) 756, 763
MvaI CCWGG 2 cut(s) 93, 411
MwoI GCNNNNNNNGC 1 cut(s) 221
NcoI CCATGG 1 cut(s) 805
NdeII GATC 4 cut(s) 66, 248, 328, 736
NlaIV GGNNCC 2 cut(s) 68, 738
NmuCI GTSAC 1 cut(s) 17
NspV TTCGAA 1 cut(s) 1010
PagI TCATGA 2 cut(s) 504, 787
PdmI GAANNNNTTC 1 cut(s) 36
PfeI GAWTC 6 cut(s) 130, 306, 517, 726, 831, 843
PflFI GACNNNGTC 1 cut(s) 23
PfoI TCCNGGA 1 cut(s) 91
PkrI GCNGC 1 cut(s) 118
PleI GAGTC 1 cut(s) 213
PpsI GAGTC 1 cut(s) 213
PshBI ATTAAT 1 cut(s) 692
Psp6I CCWGG 2 cut(s) 91, 409
PspGI CCWGG 2 cut(s) 91, 409
PspN4I GGNNCC 2 cut(s) 68, 738
PstNI CAGNNNCTG 1 cut(s) 98
PsuI RGATCY 2 cut(s) 66, 736
PsyI GACNNNGTC 1 cut(s) 23
RsaI GTAC 5 cut(s) 122, 165, 219, 234, 1048
RsaNI GTAC 5 cut(s) 121, 164, 218, 233, 1047
RseI CAYNNNNRTG 1 cut(s) 503
SaqAI TTAA 6 cut(s) 188, 527, 692, 837, 878, 1090
SatI GCNGC 1 cut(s) 117
Sau3AI GATC 4 cut(s) 66, 248, 328, 736
SchI GAGTC 1 cut(s) 214
ScrFI CCNGG 2 cut(s) 93, 411
SfaNI GCATC 4 cut(s) 459, 615, 824, 994
SfuI TTCGAA 1 cut(s) 1010
SmiMI CAYNNNNRTG 1 cut(s) 503
SsiI CCGC 1 cut(s) 124
SspMI CTAG 2 cut(s) 441, 495
StyD4I CCNGG 2 cut(s) 91, 409
StyI CCWWGG 2 cut(s) 744, 805
TaaI ACNGT 1 cut(s) 272
TaiI ACGT 2 cut(s) 24, 503
TaqI TCGA 3 cut(s) 304, 1010, 1083
TatI WGTACW 1 cut(s) 163
TfiI GAWTC 6 cut(s) 130, 306, 517, 726, 831, 843
Tru1I TTAA 6 cut(s) 188, 527, 692, 837, 878, 1090
Tru9I TTAA 6 cut(s) 188, 527, 692, 837, 878, 1090
TscAI CASTG 2 cut(s) 285, 902
TseFI GTSAC 1 cut(s) 17
TseI GCWGC 1 cut(s) 116
Tsp45I GTSAC 1 cut(s) 17
TspDTI ATGAA 7 cut(s) 143, 335, 471, 493, 530, 776, 823
TspGWI ACGGA 2 cut(s) 261, 738
TspRI CASTG 2 cut(s) 285, 902
Tth111I GACNNNGTC 1 cut(s) 23
VspI ATTAAT 1 cut(s) 692
XapI RAATTY 4 cut(s) 36, 140, 396, 1066
XcmI CCANNNNNNNNNTGG 1 cut(s) 417
XmiI GTMKAC 1 cut(s) 558
XmnI GAANNNNTTC 1 cut(s) 36
XspI CTAG 2 cut(s) 441, 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.