Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000291

Physical Location & Seq

Genomic Coordinates Reverse (-)

58432847 .. 58445148

Gene Structure 12302 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00264970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGGTGAAGTTACGAAATCAGATATTGAAGCTCTTACAACAGCGTTTACCGCTGCCATCAATTCCATGAATAATCGATTGGAGAAATTCGTGGATTGTTGGGTGAGAGGAAGGAATAACAACAACAACAACAATAATCGGCATAGAGGTGGGGAAGGAGGCCAGCGAGTTAGGGCTCCACGTGGCAAAAAAAGCATATGGGTTTCGCTCTGGCAAGCAAAGCAGAACGGGAATGACGTTCTTAAACAAATCATAAGCAACGTCCTTGATGATACACAAGAAGTATGGACAGAGCAGAAGCAGAATCAGCATAATGTGAAAGATGGAGCTAATGAAATCAATGCTGATGTGAGCAAACACAAGAAGGCCATGCTAGTATATACTACGGGGGTCGGTATACTATCGGGGATTAGTACACTACCGATAGGGCTAGTATACTACCCGGAGGAAGCCAATCAAATGTTTGAGATGCACGTATACACAATGGGCGGTCGAGCTGATGCGACGCAAATGGCTGAGCTGCTTGACCTTGAAAAAGAGTACTTCTTCACCTCCAGCTTCTACTGTATTGATCCTCGACGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

194

Amino Acids

21.96

Weight (kDa)

6.91

Isoelectric Point (pI)

28.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00860
fragaria_vesca	FvH4_1g23712 FvH4_1g29809 FvH4_1g29810 FvH4_2g02661 FvH4_2g13451 FvH4_2g17921 FvH4_2g17922 FvH4_2g19251 FvH4_2g19252 FvH4_2g28221 FvH4_2g35961 FvH4_3g10372 FvH4_3g12461 FvH4_3g12461 FvH4_3g27861 FvH4_3g34591 FvH4_3g40201 FvH4_3g44612 FvH4_4g08352 FvH4_4g12251 FvH4_4g12742 FvH4_4g13904 FvH4_4g14287 FvH4_4g15243 FvH4_4g24071 FvH4_4g33448 FvH4_5g21912 FvH4_5g39371 FvH4_6g14992 FvH4_6g15221 FvH4_6g20603 FvH4_6g31093 FvH4_6g32372 FvH4_6g33012
malus_domestica	MD11G1009100.v1.1 MD13G1145000.v1.1 MD16G1138700.v1.1
prunus_persica	Prupe.5G246300_v2.0.a1 Prupe.7G034800_v2.0.a1 Prupe.8G084500_v2.0.a1
pyrus_communis	pycom01g18240 pycom04g00330 pycom05g09010 pycom06g01670 pycom06g01690 pycom06g07180 pycom06g11620 pycom10g05720 pycom1134g00040 pycom1134g00060 pycom12486g00010 pycom12555g00230 pycom13g21670 pycom13g23130 pycom13g23140 pycom14g10580
rosa_chinensis	RchiOBHm_Chr1g0330691 RchiOBHm_Chr2g0106171 RchiOBHm_Chr2g0134731 RchiOBHm_Chr2g0142791 RchiOBHm_Chr2g0149861 RchiOBHm_Chr3g0452401 RchiOBHm_Chr3g0461881 RchiOBHm_Chr4g0401341 RchiOBHm_Chr5g0075641 RchiOBHm_Chr6g0265961 RchiOBHm_Chr7g0200201 RchiOBHm_Chr7g0237811
rosa_laevigata	RLG00000002773
rosa_multiflora	Rmu_co8037806.1_g000001 Rmu_co8445989.1_g000001 Rmu_sc0000745.1_g000039 Rmu_sc0004448.1_g000029 Rmu_sc0004488.1_g000002 Rmu_sc0004591.1_g000018 Rmu_sc0005065.1_g000030 Rmu_sc0005150.1_g000005 Rmu_sc0005654.1_g000011 Rmu_sc0006986.1_g000016
rosa_roxburghii	Rroxscaffold_164G00436490 Rroxscaffold_175G00432490 Rroxscaffold_1G00059440 Rroxscaffold_1G00064410 Rroxscaffold_2G00100310 Rroxscaffold_2G00128170 Rroxscaffold_3G00239420 Rroxscaffold_3G00264970 Rroxscaffold_3G00271550 Rroxscaffold_4G00300240 Rroxscaffold_5G00385050 Rroxscaffold_6G00399720
rosa_rugosa	Rorug02G0252200
rosa_samantha	Rh2DG251900 Rh7CG329900
rosa_wichuraiana	Rw0G004800 Rw1G000850 Rw1G022350 Rw2G027030 Rw2G027760 Rw2G028410 Rw2G029130 Rw2G029390 Rw2G032490 Rw2G039460 Rw2G047800 Rw2G050340 Rw3G026430 Rw4G018370 Rw4G030750 Rw4G033140 Rw5G011950 Rw5G012010 Rw5G029280 Rw5G040190 Rw5G044570 Rw5G048240 Rw6G000340 Rw6G010140 Rw6G026480 Rw7G033750 Rw7G037250 Rw7G042080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	397, 435, 477
AciI	CCGC	2 cut(s)	51, 489
AclWI	GGATC	1 cut(s)	566
AcsI	RAATTY	1 cut(s)	86
AcvI	CACGTG	1 cut(s)	182
AfaI	GTAC	2 cut(s)	415, 542
AgsI	TTSAA	2 cut(s)	29, 533
AjuI	GAANNNNNNNTTGG	2 cut(s)	62, 94
AluBI	AGCT	5 cut(s)	32, 329, 497, 520, 558
AluI	AGCT	5 cut(s)	32, 329, 497, 520, 558
AlwI	GGATC	1 cut(s)	566
AoxI	GGCC	2 cut(s)	160, 366
ApeKI	GCWGC	2 cut(s)	53, 520
ApoI	RAATTY	1 cut(s)	86
AsuC2I	CCSGG	1 cut(s)	443
AsuHPI	GGTGA	3 cut(s)	17, 115, 541
BanII	GRGCYC	1 cut(s)	178
BbrPI	CACGTG	1 cut(s)	182
BbvI	GCAGC	2 cut(s)	40, 507
BccI	CCATC	2 cut(s)	65, 317
BcnI	CCSGG	1 cut(s)	443
BfaI	CTAG	2 cut(s)	374, 431
BisI	GCNGC	2 cut(s)	54, 521
BlpI	GCTNAGC	1 cut(s)	516
BlsI	GCNGC	2 cut(s)	55, 522
BmcAI	AGTACT	1 cut(s)	542
Bme1390I	CCNGG	1 cut(s)	443
BmiI	GGNNCC	1 cut(s)	177
BmrFI	CCNGG	1 cut(s)	443
BmsI	GCATC	2 cut(s)	459, 490
BpmI	CTGGAG	1 cut(s)	538
Bpu1102I	GCTNAGC	1 cut(s)	516
BpuMI	CCSGG	1 cut(s)	443
Bsa29I	ATCGAT	1 cut(s)	76
BsaAI	YACGTR	2 cut(s)	182, 475
BseCI	ATCGAT	1 cut(s)	76
BseMII	CTCAG	1 cut(s)	507
BseXI	GCAGC	2 cut(s)	40, 507
Bsh1285I	CGRYCG	1 cut(s)	493
BshFI	GGCC	2 cut(s)	162, 368
BshVI	ATCGAT	1 cut(s)	76
BsiEI	CGRYCG	1 cut(s)	493
BsiSI	CCGG	1 cut(s)	443
BsnI	GGCC	2 cut(s)	162, 368
Bsp1286I	GDGCHC	1 cut(s)	178
Bsp143I	GATC	1 cut(s)	571
Bsp1720I	GCTNAGC	1 cut(s)	516
BspACI	CCGC	2 cut(s)	51, 489
BspANI	GGCC	2 cut(s)	162, 368
BspCNI	CTCAG	1 cut(s)	508
BspDI	ATCGAT	1 cut(s)	76
BspLI	GGNNCC	1 cut(s)	177
BspPI	GGATC	1 cut(s)	566
BssMI	GATC	1 cut(s)	571
BssNAI	GTATAC	3 cut(s)	398, 436, 478
Bst1107I	GTATAC	3 cut(s)	398, 436, 478
Bst4CI	ACNGT	1 cut(s)	566
BstBAI	YACGTR	2 cut(s)	182, 475
BstC8I	GCNNGC	2 cut(s)	164, 216
BstDEI	CTNAG	1 cut(s)	516
BstKTI	GATC	1 cut(s)	574
BstMBI	GATC	1 cut(s)	571
BstMCI	CGRYCG	1 cut(s)	493
BstMWI	GCNNNNNNNGC	4 cut(s)	50, 192, 220, 307
BstSCI	CCNGG	1 cut(s)	441
BstV1I	GCAGC	2 cut(s)	40, 507
BstZ17I	GTATAC	3 cut(s)	398, 436, 478
Bsu15I	ATCGAT	1 cut(s)	76
BsuRI	GGCC	2 cut(s)	162, 368
BsuTUI	ATCGAT	1 cut(s)	76
Cac8I	GCNNGC	2 cut(s)	164, 216
ClaI	ATCGAT	1 cut(s)	76
CseI	GACGC	1 cut(s)	514
Csp6I	GTAC	2 cut(s)	414, 541
CviAII	CATG	2 cut(s)	67, 370
CviQI	GTAC	2 cut(s)	414, 541
DdeI	CTNAG	1 cut(s)	516
DpnI	GATC	1 cut(s)	573
DpnII	GATC	1 cut(s)	571
Eco24I	GRGCYC	1 cut(s)	178
Eco72I	CACGTG	1 cut(s)	182
EcoT38I	GRGCYC	1 cut(s)	178
FaeI	CATG	2 cut(s)	70, 373
FatI	CATG	2 cut(s)	66, 369
FauNDI	CATATG	1 cut(s)	197
FblI	GTMKAC	3 cut(s)	397, 435, 477
Fnu4HI	GCNGC	2 cut(s)	54, 521
FriOI	GRGCYC	1 cut(s)	178
Fsp4HI	GCNGC	2 cut(s)	54, 521
FspBI	CTAG	2 cut(s)	374, 431
GluI	GCNGC	2 cut(s)	54, 521
GsuI	CTGGAG	1 cut(s)	538
HaeIII	GGCC	2 cut(s)	162, 368
HapII	CCGG	1 cut(s)	443
HgaI	GACGC	1 cut(s)	514
Hin1II	CATG	2 cut(s)	70, 373
HinfI	GANTC	1 cut(s)	304
HpaII	CCGG	1 cut(s)	443
HphI	GGTGA	3 cut(s)	17, 115, 541
Hpy166II	GTNNAC	5 cut(s)	48, 398, 416, 436, 478
Hpy188I	TCNGA	1 cut(s)	22
Hpy8I	GTNNAC	5 cut(s)	48, 398, 416, 436, 478
Hpy99I	CGWCG	2 cut(s)	508, 582
HpyAV	CCTTC	3 cut(s)	105, 149, 358
HpyCH4III	ACNGT	1 cut(s)	566
HpyCH4IV	ACGT	4 cut(s)	181, 237, 261, 474
HpyCH4V	TGCA	1 cut(s)	472
HpyF10VI	GCNNNNNNNGC	4 cut(s)	50, 192, 220, 307
HpyF3I	CTNAG	1 cut(s)	516
HpySE526I	ACGT	4 cut(s)	181, 237, 261, 474
Hsp92II	CATG	2 cut(s)	70, 373
Kzo9I	GATC	1 cut(s)	571
LmnI	GCTCC	2 cut(s)	181, 326
LpnPI	CCDG	4 cut(s)	176, 196, 456, 568
Lsp1109I	GCAGC	2 cut(s)	40, 507
LweI	GCATC	2 cut(s)	459, 490
MaeI	CTAG	2 cut(s)	374, 431
MaeII	ACGT	4 cut(s)	181, 237, 261, 474
MaeIII	GTNAC	1 cut(s)	10
MalI	GATC	1 cut(s)	573
MboI	GATC	1 cut(s)	571
MboII	GAAGA	1 cut(s)	538
MhlI	GDGCHC	1 cut(s)	178
MluCI	AATT	2 cut(s)	61, 86
MnlI	CCTC	6 cut(s)	101, 140, 152, 439, 562, 585
MseI	TTAA	1 cut(s)	243
MslI	CAYNNNNRTG	1 cut(s)	147
MspA1I	CMGCKG	1 cut(s)	53
MspI	CCGG	1 cut(s)	443
MspR9I	CCNGG	1 cut(s)	443
MwoI	GCNNNNNNNGC	4 cut(s)	50, 192, 220, 307
NciI	CCSGG	1 cut(s)	443
NdeI	CATATG	1 cut(s)	197
NdeII	GATC	1 cut(s)	571
NlaIII	CATG	2 cut(s)	70, 373
NlaIV	GGNNCC	1 cut(s)	177
PcsI	WCGNNNNNNNCGW	1 cut(s)	234
PfeI	GAWTC	1 cut(s)	304
PkrI	GCNGC	2 cut(s)	55, 522
PmaCI	CACGTG	1 cut(s)	182
PmlI	CACGTG	1 cut(s)	182
Ppu21I	YACGTR	2 cut(s)	182, 475
PspCI	CACGTG	1 cut(s)	182
PspN4I	GGNNCC	1 cut(s)	177
RsaI	GTAC	2 cut(s)	415, 542
RsaNI	GTAC	2 cut(s)	414, 541
RseI	CAYNNNNRTG	1 cut(s)	147
SaqAI	TTAA	1 cut(s)	243
SatI	GCNGC	2 cut(s)	54, 521
Sau3AI	GATC	1 cut(s)	571
ScaI	AGTACT	1 cut(s)	542
ScrFI	CCNGG	1 cut(s)	443
SduI	GDGCHC	1 cut(s)	178
SfaNI	GCATC	2 cut(s)	459, 490
SmiMI	CAYNNNNRTG	1 cut(s)	147
Sse9I	AATT	2 cut(s)	61, 86
SsiI	CCGC	2 cut(s)	51, 489
SspMI	CTAG	2 cut(s)	374, 431
StyD4I	CCNGG	1 cut(s)	441
TaaI	ACNGT	1 cut(s)	566
TaiI	ACGT	4 cut(s)	184, 240, 264, 477
TaqI	TCGA	3 cut(s)	76, 493, 577
TasI	AATT	2 cut(s)	61, 86
TatI	WGTACW	2 cut(s)	413, 540
TfiI	GAWTC	1 cut(s)	304
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TseI	GCWGC	2 cut(s)	53, 520
TspDTI	ATGAA	2 cut(s)	83, 348
XapI	RAATTY	1 cut(s)	86
XmiI	GTMKAC	3 cut(s)	397, 435, 477
XspI	CTAG	2 cut(s)	374, 431
ZrmI	AGTACT	1 cut(s)	542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.