pycom13g23140

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0000291
Physical Location & Seq
Forward (+)
20820025 .. 20820531
507 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g23140.1

Sequence Viewer

Length: 507 bp
ATGAAGAAATGGGCGGATCGTAAGCGAAGGAATGTGGAGTTCCAAACCGGCGACCAAGTCTTTGTGAAGCTTAATGCATCTCAGCACAAGAGTACTCGTGGCTTGCACAAGAGCTTGTTGCGGAAATATGAGGGACCATTCCCTATCATCAAGAAGGTTGGCAAAGCCTCTTATGTCGTGGAACTCCCACCCCGTCTCAAGTTTCACCCGGTGTTCCATGTGAGCAACTTGAAGCCTTATCATGCAGACAATGAGGAACCAAGCCGAGGTGAGTCTCATCGAGCACCCCCTTTGATGACGGAGGCATTTGACAAAGAAGTAGAGAGCATCGAAGCCAAGCGTGTCGTGGTGCGACCAAGACAACCAAAGCATGTGGAGTACTTTGTCAAATGGAAAGGGCTACCATACTCCGAAGCAACATGGGAGAAGGAGACGTCCTTATGGCAATATAAGGACCTGATTAATACATTCGAGAGGCAAGAGTCGACGAGGACGTCGACGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease_2 Chromo RVP_2 RVT_1 Retrotrans_gag gag-asp_proteas rve

Protein Analysis

169

Amino Acids

19.78

Weight (kDa)

9.82

Isoelectric Point (pI)

41.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SH3_Tf2-1 PF24626 17 - 81 4.2e-18 Tf2-1-like, SH3 domain
Chromo PF00385 106 - 159 4.4e-12 Chromo (CHRromatin Organisation MOdifier) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000291)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00860
fragaria_vesca FvH4_1g23712 FvH4_1g29809 FvH4_1g29810 FvH4_2g02661 FvH4_2g13451 FvH4_2g17921 FvH4_2g17922 FvH4_2g19251 FvH4_2g19252 FvH4_2g28221 FvH4_2g35961 FvH4_3g10372 FvH4_3g12461 FvH4_3g12461 FvH4_3g27861 FvH4_3g34591 FvH4_3g40201 FvH4_3g44612 FvH4_4g08352 FvH4_4g12251 FvH4_4g12742 FvH4_4g13904 FvH4_4g14287 FvH4_4g15243 FvH4_4g24071 FvH4_4g33448 FvH4_5g21912 FvH4_5g39371 FvH4_6g14992 FvH4_6g15221 FvH4_6g20603 FvH4_6g31093 FvH4_6g32372 FvH4_6g33012
malus_domestica MD11G1009100.v1.1 MD13G1145000.v1.1 MD16G1138700.v1.1
prunus_persica Prupe.5G246300_v2.0.a1 Prupe.7G034800_v2.0.a1 Prupe.8G084500_v2.0.a1
pyrus_communis pycom01g18240 pycom04g00330 pycom05g09010 pycom06g01670 pycom06g01690 pycom06g07180 pycom06g11620 pycom10g05720 pycom1134g00040 pycom1134g00060 pycom12486g00010 pycom12555g00230 pycom13g21670 pycom13g23130 pycom13g23140 pycom14g10580
rosa_chinensis RchiOBHm_Chr1g0330691 RchiOBHm_Chr2g0106171 RchiOBHm_Chr2g0134731 RchiOBHm_Chr2g0142791 RchiOBHm_Chr2g0149861 RchiOBHm_Chr3g0452401 RchiOBHm_Chr3g0461881 RchiOBHm_Chr4g0401341 RchiOBHm_Chr5g0075641 RchiOBHm_Chr6g0265961 RchiOBHm_Chr7g0200201 RchiOBHm_Chr7g0237811
rosa_laevigata RLG00000002773
rosa_multiflora Rmu_co8037806.1_g000001 Rmu_co8445989.1_g000001 Rmu_sc0000745.1_g000039 Rmu_sc0004448.1_g000029 Rmu_sc0004488.1_g000002 Rmu_sc0004591.1_g000018 Rmu_sc0005065.1_g000030 Rmu_sc0005150.1_g000005 Rmu_sc0005654.1_g000011 Rmu_sc0006986.1_g000016
rosa_roxburghii Rroxscaffold_164G00436490 Rroxscaffold_175G00432490 Rroxscaffold_1G00059440 Rroxscaffold_1G00064410 Rroxscaffold_2G00100310 Rroxscaffold_2G00128170 Rroxscaffold_3G00239420 Rroxscaffold_3G00264970 Rroxscaffold_3G00271550 Rroxscaffold_4G00300240 Rroxscaffold_5G00385050 Rroxscaffold_6G00399720
rosa_rugosa Rorug02G0252200
rosa_samantha Rh2DG251900 Rh7CG329900
rosa_wichuraiana Rw0G004800 Rw1G000850 Rw1G022350 Rw2G027030 Rw2G027760 Rw2G028410 Rw2G029130 Rw2G029390 Rw2G032490 Rw2G039460 Rw2G047800 Rw2G050340 Rw3G026430 Rw4G018370 Rw4G030750 Rw4G033140 Rw5G011950 Rw5G012010 Rw5G029280 Rw5G040190 Rw5G044570 Rw5G048240 Rw6G000340 Rw6G010140 Rw6G026480 Rw7G033750 Rw7G037250 Rw7G042080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 493
AatII GACGTC 2 cut(s) 437, 497
AccI GTMKAC 2 cut(s) 485, 497
AciI CCGC 2 cut(s) 14, 121
AclWI GGATC 1 cut(s) 24
AcyI GRCGYC 2 cut(s) 434, 494
AdeI CACNNNGTG 1 cut(s) 211
AfaI GTAC 2 cut(s) 94, 380
AfiI CCNNNNNNNGG 1 cut(s) 266
AgsI TTSAA 1 cut(s) 232
AluBI AGCT 2 cut(s) 70, 114
AluI AGCT 2 cut(s) 70, 114
Alw21I GWGCWC 1 cut(s) 286
Alw26I GTCTC 3 cut(s) 200, 279, 425
AlwI GGATC 1 cut(s) 24
ArsI GACNNNNNNTTYG 2 cut(s) 44, 76
AseI ATTAAT 1 cut(s) 462
AspS9I GGNCC 2 cut(s) 134, 454
AsuC2I CCSGG 1 cut(s) 209
AsuHPI GGTGA 2 cut(s) 197, 281
AvaII GGWCC 2 cut(s) 134, 454
BauI CACGAG 1 cut(s) 96
Bbv12I GWGCWC 1 cut(s) 286
BcnI CCSGG 1 cut(s) 209
BcoDI GTCTC 3 cut(s) 200, 279, 425
BmcAI AGTACT 2 cut(s) 94, 380
Bme1390I CCNGG 1 cut(s) 209
Bme18I GGWCC 2 cut(s) 134, 454
BmgT120I GGNCC 2 cut(s) 134, 454
BmiI GGNNCC 2 cut(s) 135, 258
BmrFI CCNGG 1 cut(s) 209
BmsI GCATC 2 cut(s) 86, 336
BpuEI CTTGAG 1 cut(s) 182
BpuMI CCSGG 1 cut(s) 209
BsaHI GRCGYC 2 cut(s) 434, 494
BsaJI CCNNGG 1 cut(s) 265
Bsc4I CCNNNNNNNGG 1 cut(s) 266
Bse118I RCCGGY 1 cut(s) 47
BseDI CCNNGG 1 cut(s) 265
BseLI CCNNNNNNNGG 1 cut(s) 266
BseMII CTCAG 1 cut(s) 95
BsiHKAI GWGCWC 1 cut(s) 286
BsiSI CCGG 2 cut(s) 48, 209
BslFI GGGAC 1 cut(s) 147
BslI CCNNNNNNNGG 1 cut(s) 266
BsmAI GTCTC 3 cut(s) 200, 279, 425
BsmBI CGTCTC 2 cut(s) 200, 425
BsmFI GGGAC 1 cut(s) 147
Bsp1286I GDGCHC 1 cut(s) 286
Bsp143I GATC 1 cut(s) 16
BspACI CCGC 2 cut(s) 14, 121
BspCNI CTCAG 1 cut(s) 94
BspLI GGNNCC 2 cut(s) 135, 258
BspPI GGATC 1 cut(s) 24
BsrFI RCCGGY 1 cut(s) 47
BssAI RCCGGY 1 cut(s) 47
BssECI CCNNGG 1 cut(s) 265
BssMI GATC 1 cut(s) 16
BssNI GRCGYC 2 cut(s) 434, 494
BssSI CACGAG 1 cut(s) 96
Bst2BI CACGAG 1 cut(s) 96
BstACI GRCGYC 2 cut(s) 434, 494
BstC8I GCNNGC 1 cut(s) 104
BstDEI CTNAG 1 cut(s) 81
BstKTI GATC 1 cut(s) 19
BstMAI GTCTC 3 cut(s) 200, 279, 425
BstMBI GATC 1 cut(s) 16
BstNSI RCATGY 1 cut(s) 374
BstSCI CCNGG 1 cut(s) 207
Cac8I GCNNGC 1 cut(s) 104
Cfr10I RCCGGY 1 cut(s) 47
Cfr13I GGNCC 2 cut(s) 134, 454
Csp6I GTAC 2 cut(s) 93, 379
CspCI CAANNNNNGTGG 2 cut(s) 354, 389
CviAII CATG 4 cut(s) 218, 242, 371, 420
CviJI RGCY 9 cut(s) 70, 102, 114, 167, 235, 264, 335, 400, 503
CviKI_1 RGCY 9 cut(s) 70, 102, 114, 167, 235, 264, 335, 400, 503
CviQI GTAC 2 cut(s) 93, 379
DdeI CTNAG 1 cut(s) 81
DpnI GATC 1 cut(s) 18
DpnII GATC 1 cut(s) 16
DraIII CACNNNGTG 1 cut(s) 211
DrdI GACNNNNNNGTC 1 cut(s) 493
DseDI GACNNNNNNGTC 1 cut(s) 493
EciI GGCGGA 1 cut(s) 29
Eco47I GGWCC 2 cut(s) 134, 454
EcoO109I RGGNCCY 1 cut(s) 454
EcoT22I ATGCAT 1 cut(s) 79
Esp3I CGTCTC 2 cut(s) 200, 425
FaeI CATG 4 cut(s) 221, 245, 374, 423
FaiI YATR 9 cut(s) 129, 174, 219, 243, 372, 406, 421, 442, 450
FaqI GGGAC 1 cut(s) 147
FatI CATG 4 cut(s) 217, 241, 370, 419
FblI GTMKAC 2 cut(s) 485, 497
HapII CCGG 2 cut(s) 48, 209
Hin1I GRCGYC 2 cut(s) 434, 494
Hin1II CATG 4 cut(s) 221, 245, 374, 423
HincII GTYRAC 2 cut(s) 486, 498
HindII GTYRAC 2 cut(s) 486, 498
HindIII AAGCTT 1 cut(s) 68
HinfI GANTC 2 cut(s) 272, 482
HpaII CCGG 2 cut(s) 48, 209
HphI GGTGA 2 cut(s) 197, 281
Hpy166II GTNNAC 2 cut(s) 486, 498
Hpy188I TCNGA 1 cut(s) 412
Hpy188III TCNNGA 2 cut(s) 151, 472
Hpy8I GTNNAC 2 cut(s) 486, 498
Hpy99I CGWCG 3 cut(s) 490, 499, 502
HpyAV CCTTC 3 cut(s) 21, 148, 421
HpyCH4IV ACGT 2 cut(s) 434, 494
HpyCH4V TGCA 3 cut(s) 77, 106, 245
HpyF3I CTNAG 1 cut(s) 81
HpySE526I ACGT 2 cut(s) 434, 494
Hsp92I GRCGYC 2 cut(s) 434, 494
Hsp92II CATG 4 cut(s) 221, 245, 374, 423
Kzo9I GATC 1 cut(s) 16
LpnPI CCDG 3 cut(s) 61, 222, 470
LweI GCATC 2 cut(s) 86, 336
MaeII ACGT 2 cut(s) 434, 494
MalI GATC 1 cut(s) 18
MboI GATC 1 cut(s) 16
MboII GAAGA 1 cut(s) 16
MhlI GDGCHC 1 cut(s) 286
MlyI GAGTC 2 cut(s) 281, 491
MnlI CCTC 7 cut(s) 124, 178, 247, 260, 295, 468, 483
Mph1103I ATGCAT 1 cut(s) 79
MseI TTAA 3 cut(s) 72, 462, 505
MspI CCGG 2 cut(s) 48, 209
MspR9I CCNGG 1 cut(s) 209
NciI CCSGG 1 cut(s) 209
NdeII GATC 1 cut(s) 16
NlaIII CATG 4 cut(s) 221, 245, 374, 423
NlaIV GGNNCC 2 cut(s) 135, 258
NmeAIII GCCGAG 1 cut(s) 290
NsiI ATGCAT 1 cut(s) 79
NspI RCATGY 1 cut(s) 374
PcsI WCGNNNNNNNCGW 2 cut(s) 491, 494
PflFI GACNNNGTC 1 cut(s) 56
PleI GAGTC 2 cut(s) 280, 490
PpsI GAGTC 2 cut(s) 280, 490
PpuMI RGGWCCY 1 cut(s) 454
PshBI ATTAAT 1 cut(s) 462
Psp5II RGGWCCY 1 cut(s) 454
PspN4I GGNNCC 2 cut(s) 135, 258
PspPI GGNCC 2 cut(s) 134, 454
PspPPI RGGWCCY 1 cut(s) 454
PsyI GACNNNGTC 1 cut(s) 56
RsaI GTAC 2 cut(s) 94, 380
RsaNI GTAC 2 cut(s) 93, 379
SalI GTCGAC 2 cut(s) 484, 496
SaqAI TTAA 3 cut(s) 72, 462, 505
Sau3AI GATC 1 cut(s) 16
Sau96I GGNCC 2 cut(s) 134, 454
ScaI AGTACT 2 cut(s) 94, 380
SchI GAGTC 2 cut(s) 281, 491
ScrFI CCNGG 1 cut(s) 209
SduI GDGCHC 1 cut(s) 286
SetI ASST 7 cut(s) 72, 116, 159, 271, 437, 459, 497
SfaNI GCATC 2 cut(s) 86, 336
SgrDI CGTCGACG 1 cut(s) 496
SinI GGWCC 2 cut(s) 134, 454
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
SsiI CCGC 2 cut(s) 14, 121
StyD4I CCNGG 1 cut(s) 207
TaiI ACGT 2 cut(s) 437, 497
TaqI TCGA 5 cut(s) 280, 330, 471, 485, 497
TatI WGTACW 2 cut(s) 92, 378
Tru1I TTAA 3 cut(s) 72, 462, 505
Tru9I TTAA 3 cut(s) 72, 462, 505
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 314
Tth111I GACNNNGTC 1 cut(s) 56
VpaK11BI GGWCC 2 cut(s) 134, 454
VspI ATTAAT 1 cut(s) 462
XceI RCATGY 1 cut(s) 374
XcmI CCANNNNNNNNNTGG 1 cut(s) 343
XmiI GTMKAC 2 cut(s) 485, 497
ZraI GACGTC 2 cut(s) 435, 495
ZrmI AGTACT 2 cut(s) 94, 380
Zsp2I ATGCAT 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.