RchiOBHm_Chr2g0134731
ERF Family

DNA RNA polymerases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000291
Physical Location & Seq
Forward (+)
51819818 .. 51820226
409 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50573

Sequence Viewer

Length: 351 bp
ATGAGTCCTTGTGCAGTTCCAGTCCTCCTTGTTCCTAAGAAGGGCAATCAATGGCGGATGTGTGTTGATAGCAGGGCCATTAATAAGATAACTGAGAAGTACAGGTTTCCTATTCCTCGTTTGGAAGACATGCTTGATGAGCTAGAAGGTTCCAAAGTGTTTACCAAGATAGACCTTCGAAGTGGATATCACCAGATTCGAATCAAGCCAGGAGATGAATGGAAGACAGCTTTTAAGAGCAAGGATGGCTTGTACGAGTGGATGGTTATGCCATTCGGGTTGTCTAATGCACCCAGCACTTTTATGAGGCTTATGAACGAGGTTCTTCGACCAAACGGTATTATCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 Retrotrans_gag rve zf-H2C2

Protein Analysis

116

Amino Acids

13.42

Weight (kDa)

9.39

Isoelectric Point (pI)

35.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_1 PF00078 11 - 111 8.6e-25 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000291)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00860
fragaria_vesca FvH4_1g23712 FvH4_1g29809 FvH4_1g29810 FvH4_2g02661 FvH4_2g13451 FvH4_2g17921 FvH4_2g17922 FvH4_2g19251 FvH4_2g19252 FvH4_2g28221 FvH4_2g35961 FvH4_3g10372 FvH4_3g12461 FvH4_3g12461 FvH4_3g27861 FvH4_3g34591 FvH4_3g40201 FvH4_3g44612 FvH4_4g08352 FvH4_4g12251 FvH4_4g12742 FvH4_4g13904 FvH4_4g14287 FvH4_4g15243 FvH4_4g24071 FvH4_4g33448 FvH4_5g21912 FvH4_5g39371 FvH4_6g14992 FvH4_6g15221 FvH4_6g20603 FvH4_6g31093 FvH4_6g32372 FvH4_6g33012
malus_domestica MD11G1009100.v1.1 MD13G1145000.v1.1 MD16G1138700.v1.1
prunus_persica Prupe.5G246300_v2.0.a1 Prupe.7G034800_v2.0.a1 Prupe.8G084500_v2.0.a1
pyrus_communis pycom01g18240 pycom04g00330 pycom05g09010 pycom06g01670 pycom06g01690 pycom06g07180 pycom06g11620 pycom10g05720 pycom1134g00040 pycom1134g00060 pycom12486g00010 pycom12555g00230 pycom13g21670 pycom13g23130 pycom13g23140 pycom14g10580
rosa_chinensis RchiOBHm_Chr1g0330691 RchiOBHm_Chr2g0106171 RchiOBHm_Chr2g0134731 RchiOBHm_Chr2g0142791 RchiOBHm_Chr2g0149861 RchiOBHm_Chr3g0452401 RchiOBHm_Chr3g0461881 RchiOBHm_Chr4g0401341 RchiOBHm_Chr5g0075641 RchiOBHm_Chr6g0265961 RchiOBHm_Chr7g0200201 RchiOBHm_Chr7g0237811
rosa_laevigata RLG00000002773
rosa_multiflora Rmu_co8037806.1_g000001 Rmu_co8445989.1_g000001 Rmu_sc0000745.1_g000039 Rmu_sc0004448.1_g000029 Rmu_sc0004488.1_g000002 Rmu_sc0004591.1_g000018 Rmu_sc0005065.1_g000030 Rmu_sc0005150.1_g000005 Rmu_sc0005654.1_g000011 Rmu_sc0006986.1_g000016
rosa_roxburghii Rroxscaffold_164G00436490 Rroxscaffold_175G00432490 Rroxscaffold_1G00059440 Rroxscaffold_1G00064410 Rroxscaffold_2G00100310 Rroxscaffold_2G00128170 Rroxscaffold_3G00239420 Rroxscaffold_3G00264970 Rroxscaffold_3G00271550 Rroxscaffold_4G00300240 Rroxscaffold_5G00385050 Rroxscaffold_6G00399720
rosa_rugosa Rorug02G0252200
rosa_samantha Rh2DG251900 Rh7CG329900
rosa_wichuraiana Rw0G004800 Rw1G000850 Rw1G022350 Rw2G027030 Rw2G027760 Rw2G028410 Rw2G029130 Rw2G029390 Rw2G032490 Rw2G039460 Rw2G047800 Rw2G050340 Rw3G026430 Rw4G018370 Rw4G030750 Rw4G033140 Rw5G011950 Rw5G012010 Rw5G029280 Rw5G040190 Rw5G044570 Rw5G048240 Rw6G000340 Rw6G010140 Rw6G026480 Rw7G033750 Rw7G037250 Rw7G042080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 55
AfaI GTAC 2 cut(s) 101, 254
AfiI CCNNNNNNNGG 1 cut(s) 41
AjnI CCWGG 1 cut(s) 208
AluBI AGCT 2 cut(s) 142, 230
AluI AGCT 2 cut(s) 142, 230
AoxI GGCC 1 cut(s) 75
AseI ATTAAT 1 cut(s) 81
AspS9I GGNCC 1 cut(s) 75
AsuHPI GGTGA 1 cut(s) 182
AsuII TTCGAA 2 cut(s) 178, 199
BbsI GAAGAC 2 cut(s) 132, 230
BccI CCATC 2 cut(s) 239, 256
BciT130I CCWGG 1 cut(s) 210
BfaI CTAG 1 cut(s) 143
Bme1390I CCNGG 1 cut(s) 210
BmgT120I GGNCC 1 cut(s) 75
BmiI GGNNCC 1 cut(s) 151
BmrFI CCNGG 1 cut(s) 210
BpiI GAAGAC 2 cut(s) 132, 230
Bpu14I TTCGAA 2 cut(s) 178, 199
BsaBI GATNNNNATC 1 cut(s) 200
Bsc4I CCNNNNNNNGG 1 cut(s) 41
Bse1I ACTGG 1 cut(s) 20
Bse8I GATNNNNATC 1 cut(s) 200
BseBI CCWGG 1 cut(s) 210
BseGI GGATG 3 cut(s) 63, 250, 267
BseJI GATNNNNATC 1 cut(s) 200
BseLI CCNNNNNNNGG 1 cut(s) 41
BseMII CTCAG 1 cut(s) 84
BseNI ACTGG 1 cut(s) 20
BseYI CCCAGC 1 cut(s) 293
BsgI GTGCAG 1 cut(s) 33
BshFI GGCC 1 cut(s) 77
BslI CCNNNNNNNGG 1 cut(s) 41
BsnI GGCC 1 cut(s) 77
Bsp119I TTCGAA 2 cut(s) 178, 199
BspACI CCGC 1 cut(s) 55
BspANI GGCC 1 cut(s) 77
BspCNI CTCAG 1 cut(s) 85
BspLI GGNNCC 1 cut(s) 151
BspT104I TTCGAA 2 cut(s) 178, 199
BsrI ACTGG 1 cut(s) 20
Bst2UI CCWGG 1 cut(s) 210
Bst4CI ACNGT 1 cut(s) 338
BstBI TTCGAA 2 cut(s) 178, 199
BstDEI CTNAG 2 cut(s) 36, 93
BstF5I GGATG 3 cut(s) 63, 250, 267
BstMWI GCNNNNNNNGC 2 cut(s) 139, 246
BstNI CCWGG 1 cut(s) 210
BstNSI RCATGY 1 cut(s) 133
BstSCI CCNGG 1 cut(s) 208
BstV2I GAAGAC 2 cut(s) 132, 230
BsuRI GGCC 1 cut(s) 77
BtsCI GGATG 3 cut(s) 63, 250, 267
Cfr13I GGNCC 1 cut(s) 75
Csp6I GTAC 2 cut(s) 100, 253
CviAII CATG 1 cut(s) 130
CviJI RGCY 6 cut(s) 77, 142, 208, 230, 249, 310
CviKI_1 RGCY 6 cut(s) 77, 142, 208, 230, 249, 310
CviQI GTAC 2 cut(s) 100, 253
DdeI CTNAG 2 cut(s) 36, 93
EciI GGCGGA 1 cut(s) 70
Eco32I GATATC 1 cut(s) 188
EcoRII CCWGG 1 cut(s) 208
EcoRV GATATC 1 cut(s) 188
FaeI CATG 1 cut(s) 133
FaiI YATR 4 cut(s) 131, 269, 305, 314
FalI AAGNNNNNCTT 4 cut(s) 117, 149, 233, 265
FatI CATG 1 cut(s) 129
FokI GGATG 3 cut(s) 70, 257, 274
FspBI CTAG 1 cut(s) 143
GsaI CCCAGC 1 cut(s) 297
HaeIII GGCC 1 cut(s) 77
Hin1II CATG 1 cut(s) 133
HinfI GANTC 3 cut(s) 4, 196, 201
HphI GGTGA 1 cut(s) 182
Hpy166II GTNNAC 1 cut(s) 162
Hpy8I GTNNAC 1 cut(s) 162
HpyAV CCTTC 3 cut(s) 34, 140, 185
HpyCH4III ACNGT 1 cut(s) 338
HpyCH4V TGCA 2 cut(s) 14, 290
HpyF10VI GCNNNNNNNGC 2 cut(s) 139, 246
HpyF3I CTNAG 2 cut(s) 36, 93
Hsp92II CATG 1 cut(s) 133
LpnPI CCDG 7 cut(s) 33, 58, 88, 195, 206, 222, 307
MaeI CTAG 1 cut(s) 143
MboII GAAGA 3 cut(s) 137, 235, 317
MlyI GAGTC 1 cut(s) 13
MnlI CCTC 4 cut(s) 35, 126, 300, 313
MseI TTAA 2 cut(s) 81, 234
MslI CAYNNNNRTG 1 cut(s) 302
MspR9I CCNGG 1 cut(s) 210
MvaI CCWGG 1 cut(s) 210
MwoI GCNNNNNNNGC 2 cut(s) 139, 246
NlaIII CATG 1 cut(s) 133
NlaIV GGNNCC 1 cut(s) 151
NspI RCATGY 1 cut(s) 133
NspV TTCGAA 2 cut(s) 178, 199
PfeI GAWTC 2 cut(s) 196, 201
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
PshBI ATTAAT 1 cut(s) 81
Psp6I CCWGG 1 cut(s) 208
PspFI CCCAGC 1 cut(s) 293
PspGI CCWGG 1 cut(s) 208
PspN4I GGNNCC 1 cut(s) 151
PspPI GGNCC 1 cut(s) 75
RsaI GTAC 2 cut(s) 101, 254
RsaNI GTAC 2 cut(s) 100, 253
RseI CAYNNNNRTG 1 cut(s) 302
SaqAI TTAA 2 cut(s) 81, 234
Sau96I GGNCC 1 cut(s) 75
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 1 cut(s) 210
SetI ASST 6 cut(s) 107, 144, 151, 177, 232, 324
SfuI TTCGAA 2 cut(s) 178, 199
SmiMI CAYNNNNRTG 1 cut(s) 302
SsiI CCGC 1 cut(s) 55
SspMI CTAG 1 cut(s) 143
StyD4I CCNGG 1 cut(s) 208
TaaI ACNGT 1 cut(s) 338
TaqI TCGA 3 cut(s) 178, 199, 328
TatI WGTACW 1 cut(s) 99
TfiI GAWTC 2 cut(s) 196, 201
Tru1I TTAA 2 cut(s) 81, 234
Tru9I TTAA 2 cut(s) 81, 234
TspDTI ATGAA 2 cut(s) 231, 329
VspI ATTAAT 1 cut(s) 81
XceI RCATGY 1 cut(s) 133
XcmI CCANNNNNNNNNTGG 1 cut(s) 216
XspI CTAG 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.