Rw6G010140
ERF Family

DNA RNA polymerases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000291
Physical Location & Seq
Forward (+)
17403148 .. 17404198
1051 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G010140.1

Sequence Viewer

Length: 963 bp
ATGATATATAATGATTGTCATTATTATAGTGACGAAGAAGTTACCTGGAGTGATCAAGGTGAGTCACTTGTGATAAGAAGAACCATGAATGCATCAAAAATAGAAGAGCACCCAGATTGGAGAAGACATAATATATTTCATACAAAGTGCACTTCCAATGGTAAGGTGTGTCAAGTTATCATTGACGGTGGGAGTTGTGAAAACATTGTGGCACAAGAGATGGTAGACAAGTTGAACTTGCAAACAAAAAGGAAGCCAATATCCTATAATCTGTTGTGGTTCAAAAAAGGTAGTGATGTAGTAGTTAACCAATGTTGTTTGTGTAATGTAGCACCAATGGATGCTTGCCATCTCTTATTAGGCCATCCTTGGCAATTTGATAGGAGAGCTCACCATGACGGGTACCAGAACACCTACTCTTTCTTGAAGGATGGAAAGAAAATTATTTTGGGTCCAGCTAGAGCAGACTACAAACCAAAATCATCCAAGGGAGAGAGCTGTAGTTTTCTCTCCACAAAGAAGTTTTTAACTGAATCCAAAGTGAGTGGGGAATTGTATGTGTTGGCACCTTTGTTGGAGGAATATAATGAAGTCATTCCTGAGGAGTTACCTTCTGGGCTACCACCTATGCGTGACATACAACACCACATTGATCTCGTACCAGGTTCAAGTTTGCCAAACATGCCTCACTATCGCATGAGTCCACAAGAATATGAACAGCTCAATAAGCAAGTGACTGAGTTGCTACAGAAAGGAGTGATCAGGGAAAGTATGAGTGCATGTGCAGTACCAGCATTACTCACACCTAAGAAGGATGAAACCTGGCATATGTGTATTGACAGTAGAGCAATAAATAAGATAACAGTCAAGTATTGGTGTGATAACATAGATTTTTGTTATTTAATTTTGGTAATTAATAATGGACCAATTGTACGAATAATTGTTATTGTGCTTTATTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 Retrotrans_gag zf-CCHC

Protein Analysis

320

Amino Acids

36.66

Weight (kDa)

6.63

Isoelectric Point (pI)

54.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000291)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00860
fragaria_vesca FvH4_1g23712 FvH4_1g29809 FvH4_1g29810 FvH4_2g02661 FvH4_2g13451 FvH4_2g17921 FvH4_2g17922 FvH4_2g19251 FvH4_2g19252 FvH4_2g28221 FvH4_2g35961 FvH4_3g10372 FvH4_3g12461 FvH4_3g12461 FvH4_3g27861 FvH4_3g34591 FvH4_3g40201 FvH4_3g44612 FvH4_4g08352 FvH4_4g12251 FvH4_4g12742 FvH4_4g13904 FvH4_4g14287 FvH4_4g15243 FvH4_4g24071 FvH4_4g33448 FvH4_5g21912 FvH4_5g39371 FvH4_6g14992 FvH4_6g15221 FvH4_6g20603 FvH4_6g31093 FvH4_6g32372 FvH4_6g33012
malus_domestica MD11G1009100.v1.1 MD13G1145000.v1.1 MD16G1138700.v1.1
prunus_persica Prupe.5G246300_v2.0.a1 Prupe.7G034800_v2.0.a1 Prupe.8G084500_v2.0.a1
pyrus_communis pycom01g18240 pycom04g00330 pycom05g09010 pycom06g01670 pycom06g01690 pycom06g07180 pycom06g11620 pycom10g05720 pycom1134g00040 pycom1134g00060 pycom12486g00010 pycom12555g00230 pycom13g21670 pycom13g23130 pycom13g23140 pycom14g10580
rosa_chinensis RchiOBHm_Chr1g0330691 RchiOBHm_Chr2g0106171 RchiOBHm_Chr2g0134731 RchiOBHm_Chr2g0142791 RchiOBHm_Chr2g0149861 RchiOBHm_Chr3g0452401 RchiOBHm_Chr3g0461881 RchiOBHm_Chr4g0401341 RchiOBHm_Chr5g0075641 RchiOBHm_Chr6g0265961 RchiOBHm_Chr7g0200201 RchiOBHm_Chr7g0237811
rosa_laevigata RLG00000002773
rosa_multiflora Rmu_co8037806.1_g000001 Rmu_co8445989.1_g000001 Rmu_sc0000745.1_g000039 Rmu_sc0004448.1_g000029 Rmu_sc0004488.1_g000002 Rmu_sc0004591.1_g000018 Rmu_sc0005065.1_g000030 Rmu_sc0005150.1_g000005 Rmu_sc0005654.1_g000011 Rmu_sc0006986.1_g000016
rosa_roxburghii Rroxscaffold_164G00436490 Rroxscaffold_175G00432490 Rroxscaffold_1G00059440 Rroxscaffold_1G00064410 Rroxscaffold_2G00100310 Rroxscaffold_2G00128170 Rroxscaffold_3G00239420 Rroxscaffold_3G00264970 Rroxscaffold_3G00271550 Rroxscaffold_4G00300240 Rroxscaffold_5G00385050 Rroxscaffold_6G00399720
rosa_rugosa Rorug02G0252200
rosa_samantha Rh2DG251900 Rh7CG329900
rosa_wichuraiana Rw0G004800 Rw1G000850 Rw1G022350 Rw2G027030 Rw2G027760 Rw2G028410 Rw2G029130 Rw2G029390 Rw2G032490 Rw2G039460 Rw2G047800 Rw2G050340 Rw3G026430 Rw4G018370 Rw4G030750 Rw4G033140 Rw5G011950 Rw5G012010 Rw5G029280 Rw5G040190 Rw5G044570 Rw5G048240 Rw6G000340 Rw6G010140 Rw6G026480 Rw7G033750 Rw7G037250 Rw7G042080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 402
AccB1I GGYRCC 2 cut(s) 402, 565
AccI GTMKAC 1 cut(s) 225
AfaI GTAC 4 cut(s) 404, 660, 789, 933
AgsI TTSAA 4 cut(s) 235, 283, 427, 669
AjnI CCWGG 3 cut(s) 44, 661, 821
AjuI GAANNNNNNNTTGG 2 cut(s) 431, 463
AluBI AGCT 4 cut(s) 389, 458, 498, 721
AluI AGCT 4 cut(s) 389, 458, 498, 721
Alw21I GWGCWC 3 cut(s) 111, 152, 391
Alw44I GTGCAC 1 cut(s) 148
AoxI GGCC 1 cut(s) 361
ApaLI GTGCAC 1 cut(s) 148
AseI ATTAAT 1 cut(s) 915
Asp700I GAANNNNTTC 1 cut(s) 594
Asp718I GGTACC 1 cut(s) 402
AspS9I GGNCC 2 cut(s) 452, 923
AsuHPI GGTGA 2 cut(s) 71, 383
AvaII GGWCC 2 cut(s) 452, 923
AxyI CCTNAGG 1 cut(s) 600
BaeGI GKGCMC 1 cut(s) 152
BanI GGYRCC 2 cut(s) 402, 565
BanII GRGCYC 1 cut(s) 391
BbsI GAAGAC 1 cut(s) 130
Bbv12I GWGCWC 3 cut(s) 111, 152, 391
BccI CCATC 4 cut(s) 214, 357, 372, 425
BciT130I CCWGG 3 cut(s) 46, 663, 823
BclI TGATCA 2 cut(s) 52, 759
BfaI CTAG 1 cut(s) 459
BfmI CTRYAG 2 cut(s) 499, 746
Bme1390I CCNGG 3 cut(s) 46, 663, 823
Bme18I GGWCC 2 cut(s) 452, 923
BmgT120I GGNCC 2 cut(s) 452, 923
BmiI GGNNCC 3 cut(s) 404, 453, 567
BmrFI CCNGG 3 cut(s) 46, 663, 823
BmsI GCATC 2 cut(s) 101, 331
BpiI GAAGAC 1 cut(s) 130
BpmI CTGGAG 1 cut(s) 67
BsaJI CCNNGG 2 cut(s) 368, 486
Bse21I CCTNAGG 1 cut(s) 600
BseBI CCWGG 3 cut(s) 46, 663, 823
BseDI CCNNGG 2 cut(s) 368, 486
BseGI GGATG 5 cut(s) 346, 364, 436, 482, 820
BseMII CTCAG 2 cut(s) 591, 729
BseRI GAGGAG 1 cut(s) 617
BseSI GKGCMC 1 cut(s) 152
BsgI GTGCAG 1 cut(s) 804
BshFI GGCC 1 cut(s) 363
BshNI GGYRCC 2 cut(s) 402, 565
BsiHKAI GWGCWC 3 cut(s) 111, 152, 391
BsmI GAATGC 1 cut(s) 94
BsnI GGCC 1 cut(s) 363
Bsp1286I GDGCHC 3 cut(s) 111, 152, 391
Bsp143I GATC 3 cut(s) 52, 652, 759
BspANI GGCC 1 cut(s) 363
BspCNI CTCAG 2 cut(s) 592, 730
BspLI GGNNCC 3 cut(s) 404, 453, 567
BspQI GCTCTTC 1 cut(s) 99
BspT107I GGYRCC 2 cut(s) 402, 565
BssECI CCNNGG 2 cut(s) 368, 486
BssMI GATC 3 cut(s) 52, 652, 759
BssT1I CCWWGG 2 cut(s) 368, 486
Bst2UI CCWGG 3 cut(s) 46, 663, 823
Bst4CI ACNGT 3 cut(s) 188, 842, 865
Bst6I CTCTTC 1 cut(s) 99
BstC8I GCNNGC 1 cut(s) 346
BstDEI CTNAG 3 cut(s) 600, 738, 807
BstF5I GGATG 5 cut(s) 346, 364, 436, 482, 820
BstKTI GATC 3 cut(s) 55, 655, 762
BstMBI GATC 3 cut(s) 52, 652, 759
BstMWI GCNNNNNNNGC 3 cut(s) 682, 727, 791
BstNI CCWGG 3 cut(s) 46, 663, 823
BstNSI RCATGY 2 cut(s) 685, 783
BstSCI CCNGG 3 cut(s) 44, 661, 821
BstSFI CTRYAG 2 cut(s) 499, 746
BstSLI GKGCMC 1 cut(s) 152
BstV2I GAAGAC 1 cut(s) 130
Bsu36I CCTNAGG 1 cut(s) 600
BsuRI GGCC 1 cut(s) 363
BtsCI GGATG 5 cut(s) 346, 364, 436, 482, 820
Cac8I GCNNGC 1 cut(s) 346
Cfr13I GGNCC 2 cut(s) 452, 923
CsiI ACCWGGT 1 cut(s) 661
Csp6I GTAC 4 cut(s) 403, 659, 788, 932
CspCI CAANNNNNGTGG 2 cut(s) 526, 561
CviAII CATG 5 cut(s) 85, 395, 682, 697, 780
CviJI RGCY 7 cut(s) 256, 363, 389, 458, 498, 619, 721
CviKI_1 RGCY 7 cut(s) 256, 363, 389, 458, 498, 619, 721
CviQI GTAC 4 cut(s) 403, 659, 788, 932
DdeI CTNAG 3 cut(s) 600, 738, 807
DpnI GATC 3 cut(s) 54, 654, 761
DpnII GATC 3 cut(s) 52, 652, 759
Eam1104I CTCTTC 1 cut(s) 99
EarI CTCTTC 1 cut(s) 99
Ecl136II GAGCTC 1 cut(s) 389
Eco130I CCWWGG 2 cut(s) 368, 486
Eco24I GRGCYC 1 cut(s) 391
Eco47I GGWCC 2 cut(s) 452, 923
Eco53kI GAGCTC 1 cut(s) 389
Eco81I CCTNAGG 1 cut(s) 600
EcoICRI GAGCTC 1 cut(s) 389
EcoRII CCWGG 3 cut(s) 44, 661, 821
EcoT14I CCWWGG 2 cut(s) 368, 486
EcoT22I ATGCAT 1 cut(s) 94
EcoT38I GRGCYC 1 cut(s) 391
ErhI CCWWGG 2 cut(s) 368, 486
FaeI CATG 5 cut(s) 88, 398, 685, 700, 783
FalI AAGNNNNNCTT 2 cut(s) 221, 253
FatI CATG 5 cut(s) 84, 394, 681, 696, 779
FauNDI CATATG 1 cut(s) 828
FbaI TGATCA 2 cut(s) 52, 759
FblI GTMKAC 1 cut(s) 225
FokI GGATG 5 cut(s) 351, 353, 443, 469, 827
FriOI GRGCYC 1 cut(s) 391
FspBI CTAG 1 cut(s) 459
GsuI CTGGAG 1 cut(s) 67
HaeIII GGCC 1 cut(s) 363
Hin1II CATG 5 cut(s) 88, 398, 685, 700, 783
HincII GTYRAC 1 cut(s) 307
HindII GTYRAC 1 cut(s) 307
HinfI GANTC 3 cut(s) 62, 533, 700
HpaI GTTAAC 1 cut(s) 307
HphI GGTGA 2 cut(s) 71, 383
Hpy166II GTNNAC 4 cut(s) 150, 226, 307, 704
Hpy188III TCNNGA 2 cut(s) 424, 599
Hpy8I GTNNAC 4 cut(s) 150, 226, 307, 704
HpyAV CCTTC 3 cut(s) 421, 621, 805
HpyCH4III ACNGT 3 cut(s) 188, 842, 865
HpyCH4V TGCA 5 cut(s) 92, 150, 241, 779, 785
HpyF10VI GCNNNNNNNGC 3 cut(s) 682, 727, 791
HpyF3I CTNAG 3 cut(s) 600, 738, 807
Hsp92II CATG 5 cut(s) 88, 398, 685, 700, 783
KpnI GGTACC 1 cut(s) 406
Ksp22I TGATCA 2 cut(s) 52, 759
KspAI GTTAAC 1 cut(s) 307
Kzo9I GATC 3 cut(s) 52, 652, 759
LguI GCTCTTC 1 cut(s) 99
LweI GCATC 2 cut(s) 101, 331
MabI ACCWGGT 1 cut(s) 661
MaeI CTAG 1 cut(s) 459
MaeIII GTNAC 6 cut(s) 29, 40, 63, 606, 632, 733
MalI GATC 3 cut(s) 54, 654, 761
MboI GATC 3 cut(s) 52, 652, 759
MboII GAAGA 4 cut(s) 47, 90, 116, 135
MfeI CAATTG 1 cut(s) 927
MhlI GDGCHC 3 cut(s) 111, 152, 391
MluCI AATT 7 cut(s) 374, 441, 551, 903, 912, 927, 939
MlyI GAGTC 2 cut(s) 71, 709
MmeI TCCRAC 1 cut(s) 555
MnlI CCTC 3 cut(s) 571, 595, 696
Mph1103I ATGCAT 1 cut(s) 94
MroXI GAANNNNTTC 1 cut(s) 594
MseI TTAA 4 cut(s) 306, 527, 902, 915
MspR9I CCNGG 3 cut(s) 46, 663, 823
MunI CAATTG 1 cut(s) 927
Mva1269I GAATGC 1 cut(s) 94
MvaI CCWGG 3 cut(s) 46, 663, 823
MwoI GCNNNNNNNGC 3 cut(s) 682, 727, 791
NdeI CATATG 1 cut(s) 828
NdeII GATC 3 cut(s) 52, 652, 759
NlaIII CATG 5 cut(s) 88, 398, 685, 700, 783
NlaIV GGNNCC 3 cut(s) 404, 453, 567
NmuCI GTSAC 4 cut(s) 29, 63, 632, 733
NsiI ATGCAT 1 cut(s) 94
NspI RCATGY 2 cut(s) 685, 783
PciSI GCTCTTC 1 cut(s) 99
PctI GAATGC 1 cut(s) 94
PdmI GAANNNNTTC 1 cut(s) 594
PfeI GAWTC 1 cut(s) 533
PleI GAGTC 2 cut(s) 70, 708
PpsI GAGTC 2 cut(s) 70, 708
PshBI ATTAAT 1 cut(s) 915
Psp124BI GAGCTC 1 cut(s) 391
Psp6I CCWGG 3 cut(s) 44, 661, 821
PspGI CCWGG 3 cut(s) 44, 661, 821
PspN4I GGNNCC 3 cut(s) 404, 453, 567
PspPI GGNCC 2 cut(s) 452, 923
RsaI GTAC 4 cut(s) 404, 660, 789, 933
RsaNI GTAC 4 cut(s) 403, 659, 788, 932
SacI GAGCTC 1 cut(s) 391
SapI GCTCTTC 1 cut(s) 99
SaqAI TTAA 4 cut(s) 306, 527, 902, 915
Sau3AI GATC 3 cut(s) 52, 652, 759
Sau96I GGNCC 2 cut(s) 452, 923
SchI GAGTC 2 cut(s) 71, 709
ScrFI CCNGG 3 cut(s) 46, 663, 823
SduI GDGCHC 3 cut(s) 111, 152, 391
SexAI ACCWGGT 1 cut(s) 661
SfaNI GCATC 2 cut(s) 101, 331
SfcI CTRYAG 2 cut(s) 499, 746
SinI GGWCC 2 cut(s) 452, 923
Sse9I AATT 7 cut(s) 374, 441, 551, 903, 912, 927, 939
SspMI CTAG 1 cut(s) 459
SstI GAGCTC 1 cut(s) 391
StyD4I CCNGG 3 cut(s) 44, 661, 821
StyI CCWWGG 2 cut(s) 368, 486
TaaI ACNGT 3 cut(s) 188, 842, 865
TasI AATT 7 cut(s) 374, 441, 551, 903, 912, 927, 939
TfiI GAWTC 1 cut(s) 533
Tru1I TTAA 4 cut(s) 306, 527, 902, 915
Tru9I TTAA 4 cut(s) 306, 527, 902, 915
TseFI GTSAC 4 cut(s) 29, 63, 632, 733
Tsp45I GTSAC 4 cut(s) 29, 63, 632, 733
TspDTI ATGAA 5 cut(s) 101, 128, 603, 729, 831
VneI GTGCAC 1 cut(s) 148
VpaK11BI GGWCC 2 cut(s) 452, 923
VspI ATTAAT 1 cut(s) 915
XceI RCATGY 2 cut(s) 685, 783
XmiI GTMKAC 1 cut(s) 225
XmnI GAANNNNTTC 1 cut(s) 594
XspI CTAG 1 cut(s) 459
Zsp2I ATGCAT 1 cut(s) 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.