FvH4_6g15221

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000291
Physical Location & Seq
Reverse (-)
9460286 .. 9462985
2700 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g15221.t1

Sequence Viewer

Length: 2700 bp
ATGAAAGCAGTCAACTCCTCACCTTTGGCCACAGTGGGGGTATCTCGAAGAGCACAGGTGAAGCTGGGTAGTTGGGAAGGGAAGACAGACTTGGTTGTTGTAGAGATGGACGACTTCGACGTCATATTAGGGATGGACTTTTTGCTGGAACACAAAGCCATCCCCATTCCCAATGCTCGAAATTTGTTGATCATGGGGGAGAGACCATGTGTAGTGCCTGCGAAGATAGTCCCGCCAAGTGAACCCCGTCTCTTGTCTGCTCTCCAGTTCAAGAAAGGGGTGAAGCGACATGAGCCTTCATACGTCGCTGTCCCCTTGGTAAAAGACAGGGCTGAACCAGAAGTGGTGCCAAAAGAAGTTCAGGAGGTGCTGGAGAGTTACAAGGATGTGATGCCGGCAGACCTCCCCAAGGAGCTGCCACCGAGGAGAAACATAGATCATGAGATTGAGTTACTGCCTGGTGCAAAACCACCCGCAAGGGCCCCTTACAGAATGGCTCCGCCAGAGCTAGCAGAATTGAGGAAGCAATTGGGAGATCTGTTAGAAGCAGGGTTCATTCAGCCCTCAAAGGCTCCATTTGGTGCGCCGGTGCTATTCCAAAAGAAGCATGATGGGAGCTTGAGGTTGTGTGTAGACTACCGAGCTCTTAACAAAGTCACCGTGCGGAACAAGTATCCCATTCCCTTGATTGCAGATTTGTTTGACCAGCTTAGTGGTGCCAAATATTTCACCAAGCTGGATCTCCGCTCGGGATACTACCAAGTCCGCATAGCAGAAGGAGATGAGCCCAAGACTGCATGTGTCACCCGATATGGTACTTTTGAGTTCTTGGTGATGCCGTTCGGGTTGACCAATGCACCTGCCACTTTCTGCACATTGATGAACCAAGTCTTCCATGGTTACCTTGACAAATTTGTGGTGGTGTATTTGGATGACATTGTGATATACAGTTCCACTCTGGAGGAACATGTGGAACACATAAGGCTAGTGTTTCAACAGTTACGAGCCCATCAGCTGTATGTCAAGCGTGAAAAGTGCTCCTTCGCGCAAGATACTATTAAGTTCTTGGGCCATGTTATAGAGAGGGGGAGGATCAGGATGGACATGGAGAAAGTACAAGCGATCGAGGAGTGGCAGAGTCCCACGAATGTGAAGGAGCTGCGTTCTTTTCTTGGACTGGCTAATTACTATAGGCGGTTCATTAAGAATTACTCAGGAAGGACAACTCCCTTGACTGACCTCTTGAAGAAGGGAGCGGTGTGGGACTGGAACGAAGACTGTGAGCAAGCCTTCATGAACTTGAAGAAGGCTGTGATGGAAGATCCTGTTCTTGCCTTGCCAGTCTTGAGCAAACCATTTGAAGTGCAGACCGATGCATCTGACTTCGCCCTAGAGGGAGTCCTACTACAAGAAGGGCATCCAGTGGCGTATGAGAGTCATAAGCTCTCACCAGTGGAAAGGAGATATACAGCCCATGAGAGAGAAATGTTGGCTGTGATCCACTGTTTGAGGACTTGGAGGCACTATTTGCTAGGGGCAAATTTTACTGTAAAGACAGACAACTCTGCAGTTAGTCATTTCCTGACACAACCGAAGTTGACCTCAAAGCAAGCTCGGTGGCAAGAGTTTCTCGCCGAGTTCGACTTTCAATTTGAGCACAAAGCAGGGTACACCAATCAAGTTGCGGACGCCCTAAGCCGCAAGGCCAACCTTGCGGCCCTTCGAAACCTGGCGACTTTGTCAGGCAGTGGAGTTGCCACTGACATTAAGGAAAGAGTAAAGGCTGGTTTGGAGAAAGATCCCGTGGCTCAAGGCCTCGTGAAGCTAGTGCGAGAAGGGAAGAGCCGCAGATTCTGGTTGGAGGACGGCTTGTTAAAGACAAAAGGAGGAAGAACATATCTTCCCCGGGTGGATGGATTGCGAAGAATGTTGATGAGAGAGTGCCATGACACCTTGTGGGCAGGGCATCCCGGGTGGCACAGAACCTATGCCCTCTTGAAACAGGGTTATTACTGGCCGCAGATGCGAGACGATGTGATGGAGTACACCAGGACGTGTCTCATCTGCCAACAAGACAAGGTAGAGCGACAAAAGACAGCTGGGTTGCTGGAGCCGCTGGCAACACCCACTCGTCCGTGGGAGAGTGTCTCCCTCGATTTCATTACCAATCTCCCGAAGGTTGGGGAAGTATCTGGAATCCTGGTCGTGGTGGACAGGTTCTCGAAGTATGCAACATTTGTTCTAACATCGAAGCATTGCTCGGCCGAAGACACAGCGAGTCTCTTCTTCAAACATGTGGTGAAATATTGGGGAGTACCACAGAATATCGTTAGTGATCGAGACCCTAGGTTCACAGGGTCGTTTTGGACAGAGTTGTTCAAGCTACTGGGGTCTGAACTCAACATCTCCTCAAGTTATCACCCTCAGACGGATGGGCAGACTGAGAGATTCAATGCAATGTTGGAAGAATACTTGAGGCACTTTGTTCATGCAAATATGAAGAATTGGGTGGAGTTACTGGATGTGGCCCAGTTCTGTTTCAATTCGAAGAAGAGTTCAGCCACCAACAAGAGCGCGTTTGAAGTGGTGACTGGCCAGCAACCACTCTTGCCTCATACTGTACAGGAGGTATACAAGGGGAAAAACCCGCGGGCTTTCAACTTCACCAAAGAGTGGAAAGCCAACGCGGACATTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease_2 Chromo RVT_1 Retrotrans_gag gag-asp_proteas rve

Protein Analysis

900

Amino Acids

102.51

Weight (kDa)

8.84

Isoelectric Point (pI)

39.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_1 PF00078 201 - 360 2.5e-39 Reverse transcriptase (RNA-dependent DNA polymerase)
RT_RNaseH_2 PF17919 423 - 517 2.9e-32 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 450 - 547 5.5e-32 RNase H-like domain found in reverse transcriptase
Integrase_H2C2 PF17921 640 - 693 3.4e-21 Integrase zinc binding domain
rve PF00665 710 - 808 5.9e-07 Integrase core domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000291)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00860
fragaria_vesca FvH4_1g23712 FvH4_1g29809 FvH4_1g29810 FvH4_2g02661 FvH4_2g13451 FvH4_2g17921 FvH4_2g17922 FvH4_2g19251 FvH4_2g19252 FvH4_2g28221 FvH4_2g35961 FvH4_3g10372 FvH4_3g12461 FvH4_3g12461 FvH4_3g27861 FvH4_3g34591 FvH4_3g40201 FvH4_3g44612 FvH4_4g08352 FvH4_4g12251 FvH4_4g12742 FvH4_4g13904 FvH4_4g14287 FvH4_4g15243 FvH4_4g24071 FvH4_4g33448 FvH4_5g21912 FvH4_5g39371 FvH4_6g14992 FvH4_6g15221 FvH4_6g20603 FvH4_6g31093 FvH4_6g32372 FvH4_6g33012
malus_domestica MD11G1009100.v1.1 MD13G1145000.v1.1 MD16G1138700.v1.1
prunus_persica Prupe.5G246300_v2.0.a1 Prupe.7G034800_v2.0.a1 Prupe.8G084500_v2.0.a1
pyrus_communis pycom01g18240 pycom04g00330 pycom05g09010 pycom06g01670 pycom06g01690 pycom06g07180 pycom06g11620 pycom10g05720 pycom1134g00040 pycom1134g00060 pycom12486g00010 pycom12555g00230 pycom13g21670 pycom13g23130 pycom13g23140 pycom14g10580
rosa_chinensis RchiOBHm_Chr1g0330691 RchiOBHm_Chr2g0106171 RchiOBHm_Chr2g0134731 RchiOBHm_Chr2g0142791 RchiOBHm_Chr2g0149861 RchiOBHm_Chr3g0452401 RchiOBHm_Chr3g0461881 RchiOBHm_Chr4g0401341 RchiOBHm_Chr5g0075641 RchiOBHm_Chr6g0265961 RchiOBHm_Chr7g0200201 RchiOBHm_Chr7g0237811
rosa_laevigata RLG00000002773
rosa_multiflora Rmu_co8037806.1_g000001 Rmu_co8445989.1_g000001 Rmu_sc0000745.1_g000039 Rmu_sc0004448.1_g000029 Rmu_sc0004488.1_g000002 Rmu_sc0004591.1_g000018 Rmu_sc0005065.1_g000030 Rmu_sc0005150.1_g000005 Rmu_sc0005654.1_g000011 Rmu_sc0006986.1_g000016
rosa_roxburghii Rroxscaffold_164G00436490 Rroxscaffold_175G00432490 Rroxscaffold_1G00059440 Rroxscaffold_1G00064410 Rroxscaffold_2G00100310 Rroxscaffold_2G00128170 Rroxscaffold_3G00239420 Rroxscaffold_3G00264970 Rroxscaffold_3G00271550 Rroxscaffold_4G00300240 Rroxscaffold_5G00385050 Rroxscaffold_6G00399720
rosa_rugosa Rorug02G0252200
rosa_samantha Rh2DG251900 Rh7CG329900
rosa_wichuraiana Rw0G004800 Rw1G000850 Rw1G022350 Rw2G027030 Rw2G027760 Rw2G028410 Rw2G029130 Rw2G029390 Rw2G032490 Rw2G039460 Rw2G047800 Rw2G050340 Rw3G026430 Rw4G018370 Rw4G030750 Rw4G033140 Rw5G011950 Rw5G012010 Rw5G029280 Rw5G040190 Rw5G044570 Rw5G048240 Rw6G000340 Rw6G010140 Rw6G026480 Rw7G033750 Rw7G037250 Rw7G042080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 868
AasI GACNNNNNNGTC 1 cut(s) 119
AatII GACGTC 1 cut(s) 123
Acc36I ACCTGC 1 cut(s) 868
AccB1I GGYRCC 2 cut(s) 346, 716
AccB7I CCANNNNNTGG 1 cut(s) 2673
AccBSI CCGCTC 2 cut(s) 747, 1256
AccI GTMKAC 2 cut(s) 633, 2631
AccII CGCG 4 cut(s) 1046, 2576, 2650, 2687
AclWI GGATC 5 cut(s) 747, 1100, 1316, 1492, 1793
AcoI YGGCCR 4 cut(s) 27, 2015, 2262, 2593
AcsI RAATTY 3 cut(s) 181, 911, 1540
AcyI GRCGYC 2 cut(s) 120, 1689
AdeI CACNNNGTG 1 cut(s) 1956
AfaI GTAC 6 cut(s) 817, 1116, 1670, 2045, 2316, 2622
AfiI CCNNNNNNNGG 6 cut(s) 36, 409, 2180, 2206, 2428, 2673
AflIII ACRYGT 3 cut(s) 967, 2054, 2293
AjiI CACGTC 1 cut(s) 2055
AjnI CCWGG 4 cut(s) 457, 1728, 2048, 2199
AjuI GAANNNNNNNTTGG 2 cut(s) 74, 106
AleI CACNNNNGTG 1 cut(s) 1148
AloI GAACNNNNNNTCC 2 cut(s) 1885, 1917
Alw21I GWGCWC 4 cut(s) 55, 646, 1040, 1659
Alw26I GTCTC 7 cut(s) 196, 254, 2022, 2063, 2152, 2285, 2334
AlwI GGATC 5 cut(s) 747, 1100, 1316, 1492, 1793
AlwNI CAGNNNCTG 1 cut(s) 1854
Ama87I CYCGRG 3 cut(s) 748, 1905, 1970
ApaI GGGCCC 1 cut(s) 484
ApeKI GCWGC 2 cut(s) 415, 1159
ApoI RAATTY 3 cut(s) 181, 911, 1540
ArsI GACNNNNNNTTYG 2 cut(s) 1634, 1666
AspA2I CCTAGG 1 cut(s) 2345
AspLEI GCGC 3 cut(s) 586, 1048, 2576
AspS9I GGNCC 5 cut(s) 480, 481, 1069, 1717, 2527
AsuC2I CCSGG 4 cut(s) 1906, 1907, 1971, 1972
AsuII TTCGAA 2 cut(s) 1723, 2546
AsuNHI GCTAGC 1 cut(s) 508
AvaI CYCGRG 3 cut(s) 748, 1905, 1970
AvrII CCTAGG 1 cut(s) 2345
BaeGI GKGCMC 1 cut(s) 484
BalI TGGCCA 2 cut(s) 29, 2595
BanI GGYRCC 2 cut(s) 346, 716
BanII GRGCYC 4 cut(s) 484, 646, 789, 1009
BauI CACGAG 1 cut(s) 1817
BbsI GAAGAC 4 cut(s) 89, 883, 1281, 2274
Bbv12I GWGCWC 4 cut(s) 55, 646, 1040, 1659
BbvI GCAGC 2 cut(s) 402, 1146
BceAI ACGGC 2 cut(s) 823, 1882
BciT130I CCWGG 4 cut(s) 459, 1730, 2050, 2201
BciVI GTATCC 2 cut(s) 684, 746
BclI TGATCA 1 cut(s) 189
BcnI CCSGG 4 cut(s) 1906, 1907, 1971, 1972
BcoDI GTCTC 7 cut(s) 196, 254, 2022, 2063, 2152, 2285, 2334
BfaI CTAG 6 cut(s) 509, 986, 1391, 1532, 1826, 2346
BfmI CTRYAG 2 cut(s) 1189, 1566
BfuAI ACCTGC 1 cut(s) 868
BfuI GTATCC 2 cut(s) 684, 746
BglII AGATCT 1 cut(s) 535
BisI GCNGC 7 cut(s) 416, 1160, 1699, 1716, 1846, 2018, 2114
BlnI CCTAGG 1 cut(s) 2345
BlsI GCNGC 7 cut(s) 417, 1161, 1700, 1717, 1847, 2019, 2115
Bme1390I CCNGG 8 cut(s) 459, 1730, 1906, 1907, 1971, 1972, 2050, 2201
BmeT110I CYCGRG 3 cut(s) 748, 1905, 1970
BmgBI CACGTC 1 cut(s) 2055
BmgT120I GGNCC 5 cut(s) 480, 481, 1069, 1717, 2527
BmiI GGNNCC 7 cut(s) 348, 482, 483, 498, 573, 718, 2112
BmrFI CCNGG 8 cut(s) 459, 1730, 1906, 1907, 1971, 1972, 2050, 2201
BmrI ACTGGG 2 cut(s) 2396, 2524
BmsI GCATC 7 cut(s) 381, 825, 1363, 1385, 1426, 1975, 2013
BmtI GCTAGC 1 cut(s) 512
BmuI ACTGGG 2 cut(s) 2396, 2524
BpiI GAAGAC 4 cut(s) 89, 883, 1281, 2274
BplI GAGNNNNNCTC 2 cut(s) 2132, 2164
BpmI CTGGAG 4 cut(s) 248, 392, 980, 2129
Bpu10I CCTNAGC 1 cut(s) 1694
Bpu14I TTCGAA 2 cut(s) 1723, 2546
BpuEI CTTGAG 5 cut(s) 640, 1366, 1794, 2395, 2494
BpuMI CCSGG 4 cut(s) 1906, 1907, 1971, 1972
BsaHI GRCGYC 2 cut(s) 120, 1689
BsaI GGTCTC 2 cut(s) 196, 2334
Bsc4I CCNNNNNNNGG 6 cut(s) 36, 409, 2180, 2206, 2428, 2673
Bse118I RCCGGY 2 cut(s) 394, 586
Bse3DI GCAATG 3 cut(s) 2254, 2463, 2691
BseBI CCWGG 4 cut(s) 459, 1730, 2050, 2201
BseLI CCNNNNNNNGG 6 cut(s) 36, 409, 2180, 2206, 2428, 2673
BseMI GCAATG 3 cut(s) 2254, 2463, 2691
BseMII CTCAG 3 cut(s) 1227, 2433, 2438
BseRI GAGGAG 4 cut(s) 7, 439, 1142, 2398
BseSI GKGCMC 1 cut(s) 484
BseX3I CGGCCG 1 cut(s) 2262
BseXI GCAGC 2 cut(s) 402, 1146
BseYI CCCAGC 2 cut(s) 64, 2099
BsgI GTGCAG 2 cut(s) 856, 1385
Bsh1236I CGCG 4 cut(s) 1046, 2576, 2650, 2687
Bsh1285I CGRYCG 2 cut(s) 1125, 2265
BshNI GGYRCC 2 cut(s) 346, 716
BsiEI CGRYCG 2 cut(s) 1125, 2265
BsiHKAI GWGCWC 4 cut(s) 55, 646, 1040, 1659
BsiHKCI CYCGRG 3 cut(s) 748, 1905, 1970
BsiSI CCGG 4 cut(s) 395, 587, 1906, 1971
BslFI GGGAC 4 cut(s) 215, 296, 1125, 1277
BslI CCNNNNNNNGG 6 cut(s) 36, 409, 2180, 2206, 2428, 2673
BsmAI GTCTC 7 cut(s) 196, 254, 2022, 2063, 2152, 2285, 2334
BsmBI CGTCTC 2 cut(s) 254, 2022
BsmFI GGGAC 4 cut(s) 215, 296, 1125, 1277
Bso31I GGTCTC 2 cut(s) 196, 2334
BsoBI CYCGRG 3 cut(s) 748, 1905, 1970
Bsp119I TTCGAA 2 cut(s) 1723, 2546
Bsp120I GGGCCC 1 cut(s) 480
Bsp1286I GDGCHC 7 cut(s) 55, 484, 646, 789, 1009, 1040, 1659
Bsp1407I TGTACA 1 cut(s) 2620
Bsp19I CCATGG 1 cut(s) 895
BspCNI CTCAG 3 cut(s) 1226, 2434, 2437
BspFNI CGCG 4 cut(s) 1046, 2576, 2650, 2687
BspHI TCATGA 2 cut(s) 439, 1293
BspLI GGNNCC 7 cut(s) 348, 482, 483, 498, 573, 718, 2112
BspMAI CTGCAG 1 cut(s) 1570
BspMI ACCTGC 1 cut(s) 868
BspOI GCTAGC 1 cut(s) 512
BspPI GGATC 5 cut(s) 747, 1100, 1316, 1492, 1793
BspQI GCTCTTC 2 cut(s) 43, 1835
BspT104I TTCGAA 2 cut(s) 1723, 2546
BspT107I GGYRCC 2 cut(s) 346, 716
BspTNI GGTCTC 2 cut(s) 196, 2334
BsrBI CCGCTC 2 cut(s) 747, 1256
BsrDI GCAATG 3 cut(s) 2254, 2463, 2691
BsrFI RCCGGY 2 cut(s) 394, 586
BsrGI TGTACA 1 cut(s) 2620
BssAI RCCGGY 2 cut(s) 394, 586
BssNAI GTATAC 1 cut(s) 2632
BssNI GRCGYC 2 cut(s) 120, 1689
BssSI CACGAG 1 cut(s) 1817
BssT1I CCWWGG 4 cut(s) 315, 408, 895, 2345
Bst1107I GTATAC 1 cut(s) 2632
Bst2BI CACGAG 1 cut(s) 1817
Bst2UI CCWGG 4 cut(s) 459, 1730, 2050, 2201
Bst4CI ACNGT 8 cut(s) 34, 661, 950, 999, 1280, 1505, 1549, 2620
Bst6I CTCTTC 4 cut(s) 43, 1835, 2288, 2546
BstACI GRCGYC 2 cut(s) 120, 1689
BstAPI GCANNNNNTGC 1 cut(s) 1528
BstAUI TGTACA 1 cut(s) 2620
BstBI TTCGAA 2 cut(s) 1723, 2546
BstC8I GCNNGC 8 cut(s) 219, 396, 510, 1287, 1611, 2118, 2597, 2652
BstDEI CTNAG 5 cut(s) 710, 1213, 1694, 2424, 2442
BstDSI CCRYGG 4 cut(s) 895, 1803, 2135, 2648
BstEII GGTNACC 1 cut(s) 899
BstENI CCTNNNNNAGG 1 cut(s) 407
BstFNI CGCG 4 cut(s) 1046, 2576, 2650, 2687
BstHHI GCGC 3 cut(s) 586, 1048, 2576
BstMAI GTCTC 7 cut(s) 196, 254, 2022, 2063, 2152, 2285, 2334
BstMCI CGRYCG 2 cut(s) 1125, 2265
BstMWI GCNNNNNNNGC 6 cut(s) 292, 1528, 1712, 2023, 2113, 2693
BstNI CCWGG 4 cut(s) 459, 1730, 2050, 2201
BstNSI RCATGY 3 cut(s) 801, 971, 2297
BstPI GGTNACC 1 cut(s) 899
BstSCI CCNGG 8 cut(s) 457, 1728, 1904, 1905, 1969, 1970, 2048, 2199
BstSFI CTRYAG 2 cut(s) 1189, 1566
BstSLI GKGCMC 1 cut(s) 484
BstUI CGCG 4 cut(s) 1046, 2576, 2650, 2687
BstV1I GCAGC 2 cut(s) 402, 1146
BstV2I GAAGAC 4 cut(s) 89, 883, 1281, 2274
BstX2I RGATCY 4 cut(s) 535, 739, 1321, 1798
BstXI CCANNNNNNTGG 1 cut(s) 713
BstYI RGATCY 4 cut(s) 535, 739, 1321, 1798
BstZ17I GTATAC 1 cut(s) 2632
BstZI CGGCCG 1 cut(s) 2262
BsuI GTATCC 2 cut(s) 684, 746
BtgI CCRYGG 4 cut(s) 895, 1803, 2135, 2648
BtrI CACGTC 1 cut(s) 2055
BtsI GCAGTG 1 cut(s) 1753
BtsIMutI CAGTG 6 cut(s) 39, 1428, 1458, 1501, 1753, 1758
BveI ACCTGC 1 cut(s) 868
Cac8I GCNNGC 8 cut(s) 219, 396, 510, 1287, 1611, 2118, 2597, 2652
CaiI CAGNNNCTG 1 cut(s) 1854
CciI TCATGA 2 cut(s) 439, 1293
CfoI GCGC 3 cut(s) 586, 1048, 2576
Cfr10I RCCGGY 2 cut(s) 394, 586
Cfr13I GGNCC 5 cut(s) 480, 481, 1069, 1717, 2527
Cfr42I CCGCGG 1 cut(s) 2651
Cfr9I CCCGGG 2 cut(s) 1905, 1970
CseI GACGC 1 cut(s) 1697
Csp6I GTAC 6 cut(s) 816, 1115, 1669, 2044, 2315, 2621
CspCI CAANNNNNGTGG 2 cut(s) 1598, 1633
CviQI GTAC 6 cut(s) 816, 1115, 1669, 2044, 2315, 2621
DdeI CTNAG 5 cut(s) 710, 1213, 1694, 2424, 2442
DraIII CACNNNGTG 1 cut(s) 1956
DrdI GACNNNNNNGTC 1 cut(s) 119
DseDI GACNNNNNNGTC 1 cut(s) 119
EaeI YGGCCR 4 cut(s) 27, 2015, 2262, 2593
EagI CGGCCG 1 cut(s) 2262
Eam1104I CTCTTC 4 cut(s) 43, 1835, 2288, 2546
EarI CTCTTC 4 cut(s) 43, 1835, 2288, 2546
EciI GGCGGA 1 cut(s) 489
Ecl136II GAGCTC 1 cut(s) 644
EclXI CGGCCG 1 cut(s) 2262
Eco130I CCWWGG 4 cut(s) 315, 408, 895, 2345
Eco147I AGGCCT 1 cut(s) 1815
Eco24I GRGCYC 4 cut(s) 484, 646, 789, 1009
Eco31I GGTCTC 2 cut(s) 196, 2334
Eco52I CGGCCG 1 cut(s) 2262
Eco53kI GAGCTC 1 cut(s) 644
Eco88I CYCGRG 3 cut(s) 748, 1905, 1970
Eco91I GGTNACC 1 cut(s) 899
EcoICRI GAGCTC 1 cut(s) 644
EcoNI CCTNNNNNAGG 1 cut(s) 407
EcoO109I RGGNCCY 2 cut(s) 480, 481
EcoO65I GGTNACC 1 cut(s) 899
EcoRII CCWGG 4 cut(s) 457, 1728, 2048, 2199
EcoT14I CCWWGG 4 cut(s) 315, 408, 895, 2345
EcoT22I ATGCAT 1 cut(s) 1378
EcoT38I GRGCYC 4 cut(s) 484, 646, 789, 1009
ErhI CCWWGG 4 cut(s) 315, 408, 895, 2345
Esp3I CGTCTC 2 cut(s) 254, 2022
FalI AAGNNNNNCTT 6 cut(s) 74, 106, 469, 501, 1025, 1057
FaqI GGGAC 4 cut(s) 215, 296, 1125, 1277
FauI CCCGC 4 cut(s) 240, 481, 2643, 2655
FbaI TGATCA 1 cut(s) 189
FblI GTMKAC 2 cut(s) 633, 2631
Fnu4HI GCNGC 7 cut(s) 416, 1160, 1699, 1716, 1846, 2018, 2114
FriOI GRGCYC 4 cut(s) 484, 646, 789, 1009
Fsp4HI GCNGC 7 cut(s) 416, 1160, 1699, 1716, 1846, 2018, 2114
FspBI CTAG 6 cut(s) 509, 986, 1391, 1532, 1826, 2346
GlaI GCGC 3 cut(s) 585, 1047, 2575
GluI GCNGC 7 cut(s) 416, 1160, 1699, 1716, 1846, 2018, 2114
GsaI CCCAGC 2 cut(s) 68, 2103
GsuI CTGGAG 4 cut(s) 248, 392, 980, 2129
HapII CCGG 4 cut(s) 395, 587, 1906, 1971
HgaI GACGC 1 cut(s) 1697
HhaI GCGC 3 cut(s) 586, 1048, 2576
Hin1I GRCGYC 2 cut(s) 120, 1689
Hin6I GCGC 3 cut(s) 584, 1046, 2574
HinP1I GCGC 3 cut(s) 584, 1046, 2574
HincII GTYRAC 3 cut(s) 13, 849, 1599
HindII GTYRAC 3 cut(s) 13, 849, 1599
HinfI GANTC 7 cut(s) 1138, 1398, 1435, 1851, 2196, 2278, 2448
HpaII CCGG 4 cut(s) 395, 587, 1906, 1971
Hpy188I TCNGA 3 cut(s) 1381, 2395, 2427
Hpy99I CGWCG 2 cut(s) 122, 308
HpyCH4III ACNGT 8 cut(s) 34, 661, 950, 999, 1280, 1505, 1549, 2620
HpyCH4IV ACGT 3 cut(s) 120, 303, 2054
HpyF10VI GCNNNNNNNGC 6 cut(s) 292, 1528, 1712, 2023, 2113, 2693
HpyF3I CTNAG 5 cut(s) 710, 1213, 1694, 2424, 2442
HpySE526I ACGT 3 cut(s) 120, 303, 2054
Hsp92I GRCGYC 2 cut(s) 120, 1689
HspAI GCGC 3 cut(s) 584, 1046, 2574
KroI GCCGGC 1 cut(s) 394
KroNI GCCGGC 1 cut(s) 396
Ksp22I TGATCA 1 cut(s) 189
KspI CCGCGG 1 cut(s) 2651
LguI GCTCTTC 2 cut(s) 43, 1835
LmnI GCTCC 8 cut(s) 412, 502, 577, 615, 1043, 1156, 1253, 2110
Lsp1109I GCAGC 2 cut(s) 402, 1146
LweI GCATC 7 cut(s) 381, 825, 1363, 1385, 1426, 1975, 2013
MaeI CTAG 6 cut(s) 509, 986, 1391, 1532, 1826, 2346
MaeII ACGT 3 cut(s) 120, 303, 2054
MaeIII GTNAC 8 cut(s) 377, 450, 655, 802, 899, 999, 2514, 2587
MbiI CCGCTC 2 cut(s) 747, 1256
MfeI CAATTG 1 cut(s) 527
MflI RGATCY 4 cut(s) 535, 739, 1321, 1798
MhlI GDGCHC 7 cut(s) 55, 484, 646, 789, 1009, 1040, 1659
MlsI TGGCCA 2 cut(s) 29, 2595
MluNI TGGCCA 2 cut(s) 29, 2595
MlyI GAGTC 4 cut(s) 1147, 1407, 1444, 2287
MmeI TCCRAC 2 cut(s) 1839, 2442
Mox20I TGGCCA 2 cut(s) 29, 2595
Mph1103I ATGCAT 1 cut(s) 1378
MroNI GCCGGC 1 cut(s) 394
MscI TGGCCA 2 cut(s) 29, 2595
MseI TTAA 5 cut(s) 648, 1059, 1203, 1767, 1874
MslI CAYNNNNRTG 2 cut(s) 878, 1148
Msp20I TGGCCA 2 cut(s) 29, 2595
MspA1I CMGCKG 4 cut(s) 1015, 2099, 2116, 2650
MspI CCGG 4 cut(s) 395, 587, 1906, 1971
MspR9I CCNGG 8 cut(s) 459, 1730, 1906, 1907, 1971, 1972, 2050, 2201
MunI CAATTG 1 cut(s) 527
MvaI CCWGG 4 cut(s) 459, 1730, 2050, 2201
MvnI CGCG 4 cut(s) 1046, 2576, 2650, 2687
MwoI GCNNNNNNNGC 6 cut(s) 292, 1528, 1712, 2023, 2113, 2693
NaeI GCCGGC 1 cut(s) 396
NciI CCSGG 4 cut(s) 1906, 1907, 1971, 1972
NcoI CCATGG 1 cut(s) 895
NgoMIV GCCGGC 1 cut(s) 394
NheI GCTAGC 1 cut(s) 508
NlaIV GGNNCC 7 cut(s) 348, 482, 483, 498, 573, 718, 2112
NmeAIII GCCGAG 2 cut(s) 1660, 2240
NmuCI GTSAC 3 cut(s) 655, 802, 2587
NsiI ATGCAT 1 cut(s) 1378
NspI RCATGY 3 cut(s) 801, 971, 2297
NspV TTCGAA 2 cut(s) 1723, 2546
OliI CACNNNNGTG 1 cut(s) 1148
PagI TCATGA 2 cut(s) 439, 1293
PaqCI CACCTGC 1 cut(s) 868
PceI AGGCCT 1 cut(s) 1815
PciI ACATGT 2 cut(s) 967, 2293
PciSI GCTCTTC 2 cut(s) 43, 1835
PcsI WCGNNNNNNNCGW 2 cut(s) 117, 1638
PdiI GCCGGC 1 cut(s) 396
PfeI GAWTC 3 cut(s) 1851, 2196, 2448
PflFI GACNNNGTC 1 cut(s) 1738
PflMI CCANNNNNTGG 1 cut(s) 2673
PkrI GCNGC 7 cut(s) 417, 1161, 1700, 1717, 1847, 2019, 2115
Ple19I CGATCG 1 cut(s) 1125
PleI GAGTC 4 cut(s) 1146, 1406, 1443, 2286
PpsI GAGTC 4 cut(s) 1146, 1406, 1443, 2286
PscI ACATGT 2 cut(s) 967, 2293
Psp124BI GAGCTC 1 cut(s) 646
Psp6I CCWGG 4 cut(s) 457, 1728, 2048, 2199
PspEI GGTNACC 1 cut(s) 899
PspFI CCCAGC 2 cut(s) 64, 2099
PspGI CCWGG 4 cut(s) 457, 1728, 2048, 2199
PspN4I GGNNCC 7 cut(s) 348, 482, 483, 498, 573, 718, 2112
PspOMI GGGCCC 1 cut(s) 480
PspPI GGNCC 5 cut(s) 480, 481, 1069, 1717, 2527
PstI CTGCAG 1 cut(s) 1570
PstNI CAGNNNCTG 1 cut(s) 1854
PsuI RGATCY 4 cut(s) 535, 739, 1321, 1798
PsyI GACNNNGTC 1 cut(s) 1738
PvuI CGATCG 1 cut(s) 1125
PvuII CAGCTG 2 cut(s) 1015, 2099
RsaI GTAC 6 cut(s) 817, 1116, 1670, 2045, 2316, 2622
RsaNI GTAC 6 cut(s) 816, 1115, 1669, 2044, 2315, 2621
RseI CAYNNNNRTG 2 cut(s) 878, 1148
SacI GAGCTC 1 cut(s) 646
SacII CCGCGG 1 cut(s) 2651
SapI GCTCTTC 2 cut(s) 43, 1835
SaqAI TTAA 5 cut(s) 648, 1059, 1203, 1767, 1874
SatI GCNGC 7 cut(s) 416, 1160, 1699, 1716, 1846, 2018, 2114
Sau96I GGNCC 5 cut(s) 480, 481, 1069, 1717, 2527
SchI GAGTC 4 cut(s) 1147, 1407, 1444, 2287
ScrFI CCNGG 8 cut(s) 459, 1730, 1906, 1907, 1971, 1972, 2050, 2201
SduI GDGCHC 7 cut(s) 55, 484, 646, 789, 1009, 1040, 1659
SfaNI GCATC 7 cut(s) 381, 825, 1363, 1385, 1426, 1975, 2013
SfcI CTRYAG 2 cut(s) 1189, 1566
Sfr303I CCGCGG 1 cut(s) 2651
SfuI TTCGAA 2 cut(s) 1723, 2546
SgrAI CRCCGGYG 1 cut(s) 586
SgrBI CCGCGG 1 cut(s) 2651
SmaI CCCGGG 2 cut(s) 1907, 1972
SmiMI CAYNNNNRTG 2 cut(s) 878, 1148
SmlI CTYRAG 5 cut(s) 619, 1345, 1809, 2410, 2473
SmoI CTYRAG 5 cut(s) 619, 1345, 1809, 2410, 2473
SseBI AGGCCT 1 cut(s) 1815
SspI AATATT 2 cut(s) 725, 2306
SspMI CTAG 6 cut(s) 509, 986, 1391, 1532, 1826, 2346
SstI GAGCTC 1 cut(s) 646
StuI AGGCCT 1 cut(s) 1815
StyD4I CCNGG 8 cut(s) 457, 1728, 1904, 1905, 1969, 1970, 2048, 2199
StyI CCWWGG 4 cut(s) 315, 408, 895, 2345
TaaI ACNGT 8 cut(s) 34, 661, 950, 999, 1280, 1505, 1549, 2620
TaiI ACGT 3 cut(s) 123, 306, 2057
TaqII GACCGA 1 cut(s) 1385
TatI WGTACW 3 cut(s) 1114, 2043, 2620
TauI GCSGC 5 cut(s) 1701, 1718, 1848, 2020, 2116
TfiI GAWTC 3 cut(s) 1851, 2196, 2448
Tru1I TTAA 5 cut(s) 648, 1059, 1203, 1767, 1874
Tru9I TTAA 5 cut(s) 648, 1059, 1203, 1767, 1874
TscAI CASTG 6 cut(s) 39, 1428, 1458, 1508, 1753, 1765
TseFI GTSAC 3 cut(s) 655, 802, 2587
TseI GCWGC 2 cut(s) 415, 1159
Tsp45I GTSAC 3 cut(s) 655, 802, 2587
TspGWI ACGGA 2 cut(s) 2124, 2444
TspMI CCCGGG 2 cut(s) 1905, 1970
TspRI CASTG 6 cut(s) 39, 1428, 1458, 1508, 1753, 1765
Tth111I GACNNNGTC 1 cut(s) 1738
Van91I CCANNNNNTGG 1 cut(s) 2673
XagI CCTNNNNNAGG 1 cut(s) 407
XapI RAATTY 3 cut(s) 181, 911, 1540
XceI RCATGY 3 cut(s) 801, 971, 2297
XcmI CCANNNNNNNNNTGG 1 cut(s) 893
XmaI CCCGGG 2 cut(s) 1905, 1970
XmaJI CCTAGG 1 cut(s) 2345
XmiI GTMKAC 2 cut(s) 633, 2631
XspI CTAG 6 cut(s) 509, 986, 1391, 1532, 1826, 2346
ZraI GACGTC 1 cut(s) 121
Zsp2I ATGCAT 1 cut(s) 1378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.