FvH4_1g29810

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000291
Physical Location & Seq
Reverse (-)
23428273 .. 23430006
1734 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g29810.t1

Sequence Viewer

Length: 1734 bp
ATGATGATTCGTGCCTTGGTGGATTGCGGAGCAACTCATAACTTTATGACGTCGGAAGAAGCAAGGAAGCTTGGCCTCCGAGTCACGAAGGAGTCGGGCAGCGTGAAGATGGTGAATACACCGGCCACACCCATTGTTGGAGTAGCACGCGATGTGGAGGTTCACATCGGCGCTTGGAAGGGGAAAGTTGATTTCACCGTAGTCAAGATGGATGACTATGGCGTGGTAATCGGCCTTGAATTTATGGACAAGGTACGAGCATTTCCCATTCCATTCTATAACATCTTTTGCATTGTCGCGGATGGAGAATTACCTTGCGTGGTGCCCGTGGCGAGGCAAGCAAGGGAGAAGACAAAGATTCTATCCTCCATGCAACTCGCCAAAGCTTGGAAAAAGGGCGAGCCTACATTCCTAGCAACCTTCAAGATGGACGAAGAGGTTGGAGGAAAGTCCGAACCTTTGCCAAAGGCAATAGACGCAATCCTTGAGGAGTTTGGAGATGTAATGCCCAAGGAATTGCCGAAGAGGCTGCCACCAAGGAGGGAGGTGGATCATGCCATTGAGTTGGAACCCGGAGCAAAGCCACCATCAAGGTCTCCCTATAGAATGGCGCCGCCCGAGCTAGAGGAGCTCCGGAAGCAACTTAAGGAGTTGCTTGATGCCGGCTACATTCAACCATCCAAGAGTCCATACTGCGCCCCCATCTTGTTTCAAAGGAAGAAGGAAGGCTCATTAAGGATGTGCATCGACTACTGGGCGCTTAACAAGATCACCATCAAGAACAAGTATCTCATCCCTTTGATTGCCGAACTTTTTGATCAATTGGGAGGAGCAAGATATTTCACCAAGCTAGATCTTCGCTCGGGATACTATCAAGTAAGGATTGCACCCAGAGATGAACTGAAGACCGCGTGTGTAACAAGATACGGATCGTTCGAATTCTTAGTCATGCCATTCGGTCTCACCAATGCCCCGGCAACTTTTTGCACCTTGATGAACAAGGTATTCCATCCTTACCTTGATAAGTTCGTGGTAGTTTATATCGATGACATTGTGGTCTATAGCAAAACCTTGGAGGAGCATGTCGAGCACCTTCGCATAGTGTTCCAAACCCTTATGGAGAACGAACTCTATGTGAAGAAGGAGAAATGTTCCTTTGCCAAGGAGGAAGTGGACTTCCTAGGCCACAAGATCAAGGATGGAAAGCTCTTGATGGAGGAAAGCAAGGTGAAGGCCATCCAAGATTGGGAGCCACCAACCAAGGTACCCGCATTTCGATCTTTCCTTGGCTTGGTTAATTATTATCGAAGGTTCATCAAAGGATACTCCGCCATTGCCGCACCTTTGACGGACCTCTTGAAGAAAAACAAGACATGGGAGTGGACGGACCGATGCCAACAAGCCTTTGAAGACTTGAAGAAGGCTTTGATGGAGGAACCCGTGCTAAGGCTCCCGGACCTTAGCAAGCCATTTGAGGTACACACCGATGCGTCAAACTTTGCCATTGGCGGTGTACTTATACAAGAAGGGCATCCGGTAGCATTTGAAAGCCGCAAGCTCAATGACACCGAGAGACGATACTCGGTGCATGAGAAGGAGATGACGGCCATAGTTCATTGCTTGCGCACTTGGAGGCACTACTTGCTTGGTTCCCATTTCATAGTCCGAACCGACAATGTCGCCACAAGCTACTTCCAAACGCAGCAAAAGCTTACCCCTAAGCAAGCGAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease_2 Chromo RVT_1 Retrotrans_gag gag-asp_proteas rve

Protein Analysis

578

Amino Acids

66.1

Weight (kDa)

8.85

Isoelectric Point (pI)

40.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
gag-asp_proteas PF13975 3 - 83 4.4e-08 gag-polyprotein putative aspartyl protease
Asp_protease_2 PF13650 3 - 81 9.7e-07 Aspartyl protease
RVT_1 PF00078 239 - 398 9.8e-39 Reverse transcriptase (RNA-dependent DNA polymerase)
RT_RNaseH_2 PF17919 461 - 555 1.9e-37 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 486 - 577 4.9e-31 RNase H-like domain found in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000291)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00860
fragaria_vesca FvH4_1g23712 FvH4_1g29809 FvH4_1g29810 FvH4_2g02661 FvH4_2g13451 FvH4_2g17921 FvH4_2g17922 FvH4_2g19251 FvH4_2g19252 FvH4_2g28221 FvH4_2g35961 FvH4_3g10372 FvH4_3g12461 FvH4_3g12461 FvH4_3g27861 FvH4_3g34591 FvH4_3g40201 FvH4_3g44612 FvH4_4g08352 FvH4_4g12251 FvH4_4g12742 FvH4_4g13904 FvH4_4g14287 FvH4_4g15243 FvH4_4g24071 FvH4_4g33448 FvH4_5g21912 FvH4_5g39371 FvH4_6g14992 FvH4_6g15221 FvH4_6g20603 FvH4_6g31093 FvH4_6g32372 FvH4_6g33012
malus_domestica MD11G1009100.v1.1 MD13G1145000.v1.1 MD16G1138700.v1.1
prunus_persica Prupe.5G246300_v2.0.a1 Prupe.7G034800_v2.0.a1 Prupe.8G084500_v2.0.a1
pyrus_communis pycom01g18240 pycom04g00330 pycom05g09010 pycom06g01670 pycom06g01690 pycom06g07180 pycom06g11620 pycom10g05720 pycom1134g00040 pycom1134g00060 pycom12486g00010 pycom12555g00230 pycom13g21670 pycom13g23130 pycom13g23140 pycom14g10580
rosa_chinensis RchiOBHm_Chr1g0330691 RchiOBHm_Chr2g0106171 RchiOBHm_Chr2g0134731 RchiOBHm_Chr2g0142791 RchiOBHm_Chr2g0149861 RchiOBHm_Chr3g0452401 RchiOBHm_Chr3g0461881 RchiOBHm_Chr4g0401341 RchiOBHm_Chr5g0075641 RchiOBHm_Chr6g0265961 RchiOBHm_Chr7g0200201 RchiOBHm_Chr7g0237811
rosa_laevigata RLG00000002773
rosa_multiflora Rmu_co8037806.1_g000001 Rmu_co8445989.1_g000001 Rmu_sc0000745.1_g000039 Rmu_sc0004448.1_g000029 Rmu_sc0004488.1_g000002 Rmu_sc0004591.1_g000018 Rmu_sc0005065.1_g000030 Rmu_sc0005150.1_g000005 Rmu_sc0005654.1_g000011 Rmu_sc0006986.1_g000016
rosa_roxburghii Rroxscaffold_164G00436490 Rroxscaffold_175G00432490 Rroxscaffold_1G00059440 Rroxscaffold_1G00064410 Rroxscaffold_2G00100310 Rroxscaffold_2G00128170 Rroxscaffold_3G00239420 Rroxscaffold_3G00264970 Rroxscaffold_3G00271550 Rroxscaffold_4G00300240 Rroxscaffold_5G00385050 Rroxscaffold_6G00399720
rosa_rugosa Rorug02G0252200
rosa_samantha Rh2DG251900 Rh7CG329900
rosa_wichuraiana Rw0G004800 Rw1G000850 Rw1G022350 Rw2G027030 Rw2G027760 Rw2G028410 Rw2G029130 Rw2G029390 Rw2G032490 Rw2G039460 Rw2G047800 Rw2G050340 Rw3G026430 Rw4G018370 Rw4G030750 Rw4G033140 Rw5G011950 Rw5G012010 Rw5G029280 Rw5G040190 Rw5G044570 Rw5G048240 Rw6G000340 Rw6G010140 Rw6G026480 Rw7G033750 Rw7G037250 Rw7G042080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1055
AatII GACGTC 1 cut(s) 53
Acc16I TGCGCA 1 cut(s) 1625
Acc65I GGTACC 1 cut(s) 1264
AccB1I GGYRCC 3 cut(s) 322, 610, 1264
AccB7I CCANNNNNTGG 1 cut(s) 387
AccII CGCG 3 cut(s) 150, 299, 911
AccIII TCCGGA 1 cut(s) 633
AciI CCGC 9 cut(s) 27, 299, 614, 909, 1269, 1329, 1338, 1509, 1552
AclWI GGATC 2 cut(s) 558, 937
AcoI YGGCCR 2 cut(s) 123, 1605
AcsI RAATTY 2 cut(s) 239, 938
AcuI CTGAAG 1 cut(s) 923
AcyI GRCGYC 2 cut(s) 50, 611
AfaI GTAC 4 cut(s) 255, 1266, 1479, 1515
AfiI CCNNNNNNNGG 6 cut(s) 137, 333, 387, 1246, 1291, 1446
AflII CTTAAG 1 cut(s) 644
AgsI TTSAA 8 cut(s) 239, 424, 674, 713, 1360, 1409, 1417, 1547
AluBI AGCT 9 cut(s) 70, 386, 622, 631, 850, 1207, 1558, 1689, 1711
AluI AGCT 9 cut(s) 70, 386, 622, 631, 850, 1207, 1558, 1689, 1711
Alw21I GWGCWC 2 cut(s) 633, 1092
Alw26I GTCTC 3 cut(s) 600, 965, 1567
AlwI GGATC 2 cut(s) 558, 937
Ama87I CYCGRG 2 cut(s) 617, 862
Aor13HI TCCGGA 1 cut(s) 633
AoxI GGCC 6 cut(s) 73, 123, 232, 1183, 1233, 1605
ApeKI GCWGC 3 cut(s) 99, 529, 1702
ApoI RAATTY 2 cut(s) 239, 938
ArsI GACNNNNNNTTYG 2 cut(s) 930, 962
Asp718I GGTACC 1 cut(s) 1264
AspA2I CCTAGG 1 cut(s) 1180
AspLEI GCGC 5 cut(s) 173, 613, 698, 760, 1626
AspS9I GGNCC 3 cut(s) 1351, 1387, 1456
AsuC2I CCSGG 3 cut(s) 573, 974, 1454
AsuHPI GGTGA 6 cut(s) 124, 187, 763, 835, 955, 1240
AsuII TTCGAA 1 cut(s) 936
AvaI CYCGRG 2 cut(s) 617, 862
AvaII GGWCC 3 cut(s) 1351, 1387, 1456
AvrII CCTAGG 1 cut(s) 1180
BaeGI GKGCMC 1 cut(s) 327
BaeI ACNNNNGTAYC 2 cut(s) 1248, 1281
BanI GGYRCC 3 cut(s) 322, 610, 1264
BanII GRGCYC 1 cut(s) 633
BbsI GAAGAC 3 cut(s) 356, 911, 1416
Bbv12I GWGCWC 2 cut(s) 633, 1092
BbvI GCAGC 3 cut(s) 111, 516, 1714
BceAI ACGGC 1 cut(s) 1620
BcgI CGANNNNNNTGC 2 cut(s) 511, 545
BciVI GTATCC 2 cut(s) 860, 1316
BclI TGATCA 1 cut(s) 817
BcnI CCSGG 3 cut(s) 573, 974, 1454
BcoDI GTCTC 3 cut(s) 600, 965, 1567
BfaI CTAG 4 cut(s) 413, 623, 851, 1181
BfmI CTRYAG 2 cut(s) 601, 1060
BfoI RGCGCY 3 cut(s) 174, 614, 761
BfrI CTTAAG 1 cut(s) 644
BfuI GTATCC 2 cut(s) 860, 1316
BglI GCCNNNNNGGC 1 cut(s) 526
BglII AGATCT 1 cut(s) 853
BisI GCNGC 6 cut(s) 100, 530, 614, 1338, 1552, 1703
BlnI CCTAGG 1 cut(s) 1180
BlsI GCNGC 6 cut(s) 101, 531, 615, 1339, 1553, 1704
Bme1390I CCNGG 3 cut(s) 573, 974, 1454
Bme18I GGWCC 3 cut(s) 1351, 1387, 1456
BmeT110I CYCGRG 2 cut(s) 617, 862
BmgT120I GGNCC 3 cut(s) 1351, 1387, 1456
BmiI GGNNCC 8 cut(s) 324, 570, 612, 1251, 1266, 1437, 1451, 1651
BmrFI CCNGG 3 cut(s) 573, 974, 1454
BmrI ACTGGG 1 cut(s) 763
BmsI GCATC 5 cut(s) 649, 753, 1382, 1477, 1540
BmuI ACTGGG 1 cut(s) 763
BpiI GAAGAC 3 cut(s) 356, 911, 1416
Bpu10I CCTNAGC 3 cut(s) 1445, 1460, 1719
Bpu14I TTCGAA 1 cut(s) 936
BpuEI CTTGAG 1 cut(s) 506
BpuMI CCSGG 3 cut(s) 573, 974, 1454
Bsa29I ATCGAT 1 cut(s) 1044
BsaBI GATNNNNATC 3 cut(s) 743, 773, 928
BsaHI GRCGYC 2 cut(s) 50, 611
BsaI GGTCTC 2 cut(s) 600, 965
BsaWI WCCGGW 2 cut(s) 633, 1534
Bsc4I CCNNNNNNNGG 6 cut(s) 137, 333, 387, 1246, 1291, 1446
Bse118I RCCGGY 2 cut(s) 121, 662
Bse1I ACTGG 1 cut(s) 758
Bse3DI GCAATG 2 cut(s) 1332, 1615
Bse8I GATNNNNATC 3 cut(s) 743, 773, 928
BseAI TCCGGA 1 cut(s) 633
BseCI ATCGAT 1 cut(s) 1044
BseGI GGATG 9 cut(s) 217, 307, 677, 744, 792, 1009, 1204, 1236, 1531
BseJI GATNNNNATC 3 cut(s) 743, 773, 928
BseLI CCNNNNNNNGG 6 cut(s) 137, 333, 387, 1246, 1291, 1446
BseMI GCAATG 2 cut(s) 1332, 1615
BseNI ACTGG 1 cut(s) 758
BseRI GAGGAG 4 cut(s) 503, 641, 843, 1091
BseSI GKGCMC 1 cut(s) 327
BseXI GCAGC 3 cut(s) 111, 516, 1714
Bsh1236I CGCG 3 cut(s) 150, 299, 911
BshFI GGCC 6 cut(s) 75, 125, 234, 1185, 1235, 1607
BshNI GGYRCC 3 cut(s) 322, 610, 1264
BshVI ATCGAT 1 cut(s) 1044
BsiHKAI GWGCWC 2 cut(s) 633, 1092
BsiHKCI CYCGRG 2 cut(s) 617, 862
BsiSI CCGG 7 cut(s) 122, 573, 634, 663, 974, 1454, 1535
BslI CCNNNNNNNGG 6 cut(s) 137, 333, 387, 1246, 1291, 1446
BsmAI GTCTC 3 cut(s) 600, 965, 1567
BsmBI CGTCTC 1 cut(s) 1567
BsnI GGCC 6 cut(s) 75, 125, 234, 1185, 1235, 1607
Bso31I GGTCTC 2 cut(s) 600, 965
BsoBI CYCGRG 2 cut(s) 617, 862
Bsp119I TTCGAA 1 cut(s) 936
Bsp1286I GDGCHC 3 cut(s) 327, 633, 1092
Bsp13I TCCGGA 1 cut(s) 633
Bsp143I GATC 7 cut(s) 550, 768, 817, 853, 929, 1191, 1277
BspACI CCGC 9 cut(s) 27, 299, 614, 909, 1269, 1329, 1338, 1509, 1552
BspANI GGCC 6 cut(s) 75, 125, 234, 1185, 1235, 1607
BspDI ATCGAT 1 cut(s) 1044
BspEI TCCGGA 1 cut(s) 633
BspFNI CGCG 3 cut(s) 150, 299, 911
BspLI GGNNCC 8 cut(s) 324, 570, 612, 1251, 1266, 1437, 1451, 1651
BspPI GGATC 2 cut(s) 558, 937
BspT104I TTCGAA 1 cut(s) 936
BspT107I GGYRCC 3 cut(s) 322, 610, 1264
BspTI CTTAAG 1 cut(s) 644
BspTNI GGTCTC 2 cut(s) 600, 965
BsrDI GCAATG 2 cut(s) 1332, 1615
BsrFI RCCGGY 2 cut(s) 121, 662
BsrI ACTGG 1 cut(s) 758
BssAI RCCGGY 2 cut(s) 121, 662
BssMI GATC 7 cut(s) 550, 768, 817, 853, 929, 1191, 1277
BssNI GRCGYC 2 cut(s) 50, 611
BssT1I CCWWGG 8 cut(s) 15, 510, 536, 1071, 1161, 1180, 1260, 1285
Bst4CI ACNGT 1 cut(s) 199
Bst6I CTCTTC 2 cut(s) 429, 518
BstACI GRCGYC 2 cut(s) 50, 611
BstAFI CTTAAG 1 cut(s) 644
BstAPI GCANNNNNTGC 1 cut(s) 1642
BstBI TTCGAA 1 cut(s) 936
BstC8I GCNNGC 8 cut(s) 148, 339, 401, 664, 1466, 1556, 1622, 1725
BstDEI CTNAG 4 cut(s) 943, 1445, 1460, 1719
BstDSI CCRYGG 1 cut(s) 327
BstF5I GGATG 9 cut(s) 217, 307, 677, 744, 792, 1009, 1204, 1236, 1531
BstFNI CGCG 3 cut(s) 150, 299, 911
BstH2I RGCGCY 3 cut(s) 174, 614, 761
BstHHI GCGC 5 cut(s) 173, 613, 698, 760, 1626
BstKTI GATC 7 cut(s) 553, 771, 820, 856, 932, 1194, 1280
BstMAI GTCTC 3 cut(s) 600, 965, 1567
BstMBI GATC 7 cut(s) 550, 768, 817, 853, 929, 1191, 1277
BstNSI RCATGY 1 cut(s) 1085
BstSCI CCNGG 3 cut(s) 571, 972, 1452
BstSFI CTRYAG 2 cut(s) 601, 1060
BstSLI GKGCMC 1 cut(s) 327
BstUI CGCG 3 cut(s) 150, 299, 911
BstV1I GCAGC 3 cut(s) 111, 516, 1714
BstV2I GAAGAC 3 cut(s) 356, 911, 1416
BstX2I RGATCY 1 cut(s) 853
BstXI CCANNNNNNTGG 1 cut(s) 565
BstYI RGATCY 1 cut(s) 853
Bsu15I ATCGAT 1 cut(s) 1044
BsuI GTATCC 2 cut(s) 860, 1316
BsuRI GGCC 6 cut(s) 75, 125, 234, 1185, 1235, 1607
BsuTUI ATCGAT 1 cut(s) 1044
BtgI CCRYGG 1 cut(s) 327
BtgZI GCGATG 1 cut(s) 165
BtsCI GGATG 9 cut(s) 217, 307, 677, 744, 792, 1009, 1204, 1236, 1531
Cac8I GCNNGC 8 cut(s) 148, 339, 401, 664, 1466, 1556, 1622, 1725
CfoI GCGC 5 cut(s) 173, 613, 698, 760, 1626
Cfr10I RCCGGY 2 cut(s) 121, 662
Cfr13I GGNCC 3 cut(s) 1351, 1387, 1456
ClaI ATCGAT 1 cut(s) 1044
CpoI CGGWCCG 1 cut(s) 1387
CseI GACGC 2 cut(s) 485, 1479
Csp6I GTAC 4 cut(s) 254, 1265, 1478, 1514
CspCI CAANNNNNGTGG 2 cut(s) 115, 150
CspI CGGWCCG 1 cut(s) 1387
CviAII CATG 6 cut(s) 370, 554, 949, 1082, 1374, 1589
CviQI GTAC 4 cut(s) 254, 1265, 1478, 1514
DdeI CTNAG 4 cut(s) 943, 1445, 1460, 1719
DinI GGCGCC 1 cut(s) 612
DpnI GATC 7 cut(s) 552, 770, 819, 855, 931, 1193, 1279
DpnII GATC 7 cut(s) 550, 768, 817, 853, 929, 1191, 1277
DrdI GACNNNNNNGTC 1 cut(s) 1055
DseDI GACNNNNNNGTC 1 cut(s) 1055
EaeI YGGCCR 2 cut(s) 123, 1605
Eam1104I CTCTTC 2 cut(s) 429, 518
EarI CTCTTC 2 cut(s) 429, 518
EciI GGCGGA 1 cut(s) 1318
Ecl136II GAGCTC 1 cut(s) 631
Eco130I CCWWGG 8 cut(s) 15, 510, 536, 1071, 1161, 1180, 1260, 1285
Eco24I GRGCYC 1 cut(s) 633
Eco31I GGTCTC 2 cut(s) 600, 965
Eco47I GGWCC 3 cut(s) 1351, 1387, 1456
Eco53kI GAGCTC 1 cut(s) 631
Eco57I CTGAAG 1 cut(s) 923
Eco88I CYCGRG 2 cut(s) 617, 862
EcoICRI GAGCTC 1 cut(s) 631
EcoRI GAATTC 1 cut(s) 938
EcoT14I CCWWGG 8 cut(s) 15, 510, 536, 1071, 1161, 1180, 1260, 1285
EcoT38I GRGCYC 1 cut(s) 633
EgeI GGCGCC 1 cut(s) 612
EheI GGCGCC 1 cut(s) 612
ErhI CCWWGG 8 cut(s) 15, 510, 536, 1071, 1161, 1180, 1260, 1285
Esp3I CGTCTC 1 cut(s) 1567
FaeI CATG 6 cut(s) 373, 557, 952, 1085, 1377, 1592
FatI CATG 6 cut(s) 369, 553, 948, 1081, 1373, 1588
FauI CCCGC 1 cut(s) 1276
FbaI TGATCA 1 cut(s) 817
Fnu4HI GCNGC 6 cut(s) 100, 530, 614, 1338, 1552, 1703
FokI GGATG 9 cut(s) 224, 314, 664, 751, 779, 996, 1211, 1223, 1518
FriOI GRGCYC 1 cut(s) 633
Fsp4HI GCNGC 6 cut(s) 100, 530, 614, 1338, 1552, 1703
FspBI CTAG 4 cut(s) 413, 623, 851, 1181
FspI TGCGCA 1 cut(s) 1625
GlaI GCGC 5 cut(s) 172, 612, 697, 759, 1625
GluI GCNGC 6 cut(s) 100, 530, 614, 1338, 1552, 1703
HaeII RGCGCY 3 cut(s) 174, 614, 761
HaeIII GGCC 6 cut(s) 75, 125, 234, 1185, 1235, 1607
HapII CCGG 7 cut(s) 122, 573, 634, 663, 974, 1454, 1535
HgaI GACGC 2 cut(s) 485, 1479
HhaI GCGC 5 cut(s) 173, 613, 698, 760, 1626
Hin1I GRCGYC 2 cut(s) 50, 611
Hin1II CATG 6 cut(s) 373, 557, 952, 1085, 1377, 1592
Hin6I GCGC 5 cut(s) 171, 611, 696, 758, 1624
HinP1I GCGC 5 cut(s) 171, 611, 696, 758, 1624
HindIII AAGCTT 3 cut(s) 68, 384, 1709
HinfI GANTC 5 cut(s) 7, 81, 92, 358, 685
HpaII CCGG 7 cut(s) 122, 573, 634, 663, 974, 1454, 1535
HphI GGTGA 6 cut(s) 124, 187, 763, 835, 955, 1240
Hpy166II GTNNAC 5 cut(s) 163, 1174, 1383, 1480, 1514
Hpy188I TCNGA 4 cut(s) 55, 80, 454, 1667
Hpy188III TCNNGA 8 cut(s) 85, 205, 424, 634, 778, 864, 1210, 1357
Hpy8I GTNNAC 5 cut(s) 163, 1174, 1383, 1480, 1514
Hpy99I CGWCG 1 cut(s) 55
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4IV ACGT 1 cut(s) 50
HpyCH4V TGCA 6 cut(s) 291, 373, 744, 887, 987, 1588
HpyF3I CTNAG 4 cut(s) 943, 1445, 1460, 1719
HpySE526I ACGT 1 cut(s) 50
Hsp92I GRCGYC 2 cut(s) 50, 611
Hsp92II CATG 6 cut(s) 373, 557, 952, 1085, 1377, 1592
HspAI GCGC 5 cut(s) 171, 611, 696, 758, 1624
KasI GGCGCC 1 cut(s) 610
Kpn2I TCCGGA 1 cut(s) 633
KpnI GGTACC 1 cut(s) 1268
KroI GCCGGC 1 cut(s) 662
KroNI GCCGGC 1 cut(s) 664
Ksp22I TGATCA 1 cut(s) 817
Kzo9I GATC 7 cut(s) 550, 768, 817, 853, 929, 1191, 1277
LmnI GCTCC 8 cut(s) 29, 575, 628, 636, 830, 1078, 1249, 1455
LpnPI CCDG 9 cut(s) 135, 586, 647, 676, 739, 904, 987, 1467, 1548
Lsp1109I GCAGC 3 cut(s) 111, 516, 1714
LweI GCATC 5 cut(s) 649, 753, 1382, 1477, 1540
MaeI CTAG 4 cut(s) 413, 623, 851, 1181
MaeII ACGT 1 cut(s) 50
MaeIII GTNAC 2 cut(s) 82, 916
MalI GATC 7 cut(s) 552, 770, 819, 855, 931, 1193, 1279
MboI GATC 7 cut(s) 550, 768, 817, 853, 929, 1191, 1277
MfeI CAATTG 1 cut(s) 821
MflI RGATCY 1 cut(s) 853
MhlI GDGCHC 3 cut(s) 327, 633, 1092
MluCI AATT 6 cut(s) 239, 308, 515, 821, 938, 1297
Mly113I GGCGCC 1 cut(s) 611
MlyI GAGTC 3 cut(s) 90, 101, 694
MmeI TCCRAC 4 cut(s) 33, 118, 421, 546
MroI TCCGGA 1 cut(s) 633
MroNI GCCGGC 1 cut(s) 662
MseI TTAA 4 cut(s) 645, 734, 762, 1296
MslI CAYNNNNRTG 3 cut(s) 992, 1378, 1485
MspCI CTTAAG 1 cut(s) 644
MspI CCGG 7 cut(s) 122, 573, 634, 663, 974, 1454, 1535
MspR9I CCNGG 3 cut(s) 573, 974, 1454
MunI CAATTG 1 cut(s) 821
MvnI CGCG 3 cut(s) 150, 299, 911
NaeI GCCGGC 1 cut(s) 664
NarI GGCGCC 1 cut(s) 611
NciI CCSGG 3 cut(s) 573, 974, 1454
NdeII GATC 7 cut(s) 550, 768, 817, 853, 929, 1191, 1277
NgoMIV GCCGGC 1 cut(s) 662
NlaIII CATG 6 cut(s) 373, 557, 952, 1085, 1377, 1592
NlaIV GGNNCC 8 cut(s) 324, 570, 612, 1251, 1266, 1437, 1451, 1651
NmuCI GTSAC 1 cut(s) 82
NsbI TGCGCA 1 cut(s) 1625
NspI RCATGY 1 cut(s) 1085
NspV TTCGAA 1 cut(s) 936
PcsI WCGNNNNNNNCGW 1 cut(s) 933
PdiI GCCGGC 1 cut(s) 664
PfeI GAWTC 2 cut(s) 7, 358
PflFI GACNNNGTC 1 cut(s) 1676
PflMI CCANNNNNTGG 1 cut(s) 387
PfoI TCCNGGA 1 cut(s) 1452
PkrI GCNGC 6 cut(s) 101, 531, 615, 1339, 1553, 1704
PleI GAGTC 3 cut(s) 89, 100, 693
PluTI GGCGCC 1 cut(s) 614
PpsI GAGTC 3 cut(s) 89, 100, 693
Psp124BI GAGCTC 1 cut(s) 633
PspN4I GGNNCC 8 cut(s) 324, 570, 612, 1251, 1266, 1437, 1451, 1651
PspPI GGNCC 3 cut(s) 1351, 1387, 1456
PsuI RGATCY 1 cut(s) 853
PsyI GACNNNGTC 1 cut(s) 1676
RsaI GTAC 4 cut(s) 255, 1266, 1479, 1515
RsaNI GTAC 4 cut(s) 254, 1265, 1478, 1514
RseI CAYNNNNRTG 3 cut(s) 992, 1378, 1485
Rsr2I CGGWCCG 1 cut(s) 1387
RsrII CGGWCCG 1 cut(s) 1387
SacI GAGCTC 1 cut(s) 633
SaqAI TTAA 4 cut(s) 645, 734, 762, 1296
SatI GCNGC 6 cut(s) 100, 530, 614, 1338, 1552, 1703
Sau3AI GATC 7 cut(s) 550, 768, 817, 853, 929, 1191, 1277
Sau96I GGNCC 3 cut(s) 1351, 1387, 1456
SchI GAGTC 3 cut(s) 90, 101, 694
ScrFI CCNGG 3 cut(s) 573, 974, 1454
SduI GDGCHC 3 cut(s) 327, 633, 1092
SfaNI GCATC 5 cut(s) 649, 753, 1382, 1477, 1540
SfcI CTRYAG 2 cut(s) 601, 1060
SfoI GGCGCC 1 cut(s) 612
SfuI TTCGAA 1 cut(s) 936
SinI GGWCC 3 cut(s) 1351, 1387, 1456
SmiMI CAYNNNNRTG 3 cut(s) 992, 1378, 1485
SmlI CTYRAG 2 cut(s) 485, 644
SmoI CTYRAG 2 cut(s) 485, 644
Sse9I AATT 6 cut(s) 239, 308, 515, 821, 938, 1297
SsiI CCGC 9 cut(s) 27, 299, 614, 909, 1269, 1329, 1338, 1509, 1552
SspDI GGCGCC 1 cut(s) 610
SspMI CTAG 4 cut(s) 413, 623, 851, 1181
SstI GAGCTC 1 cut(s) 633
StyD4I CCNGG 3 cut(s) 571, 972, 1452
StyI CCWWGG 8 cut(s) 15, 510, 536, 1071, 1161, 1180, 1260, 1285
TaaI ACNGT 1 cut(s) 199
TaiI ACGT 1 cut(s) 53
TaqI TCGA 6 cut(s) 747, 936, 1044, 1086, 1276, 1306
TaqII GACCGA 2 cut(s) 947, 1404
TasI AATT 6 cut(s) 239, 308, 515, 821, 938, 1297
TatI WGTACW 1 cut(s) 1513
TauI GCSGC 3 cut(s) 616, 1340, 1554
TfiI GAWTC 2 cut(s) 7, 358
Tru1I TTAA 4 cut(s) 645, 734, 762, 1296
Tru9I TTAA 4 cut(s) 645, 734, 762, 1296
TseFI GTSAC 1 cut(s) 82
TseI GCWGC 3 cut(s) 99, 529, 1702
Tsp45I GTSAC 1 cut(s) 82
TspDTI ATGAA 5 cut(s) 912, 1010, 1303, 1604, 1648
TspGWI ACGGA 3 cut(s) 942, 1364, 1400
Tth111I GACNNNGTC 1 cut(s) 1676
Van91I CCANNNNNTGG 1 cut(s) 387
Vha464I CTTAAG 1 cut(s) 644
VpaK11BI GGWCC 3 cut(s) 1351, 1387, 1456
XapI RAATTY 2 cut(s) 239, 938
XceI RCATGY 1 cut(s) 1085
XcmI CCANNNNNNNNNTGG 1 cut(s) 1168
XmaJI CCTAGG 1 cut(s) 1180
XspI CTAG 4 cut(s) 413, 623, 851, 1181
ZraI GACGTC 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.