Rmu_sc0006986.1_g000016

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006986.1
OG0000291
Physical Location & Seq
Reverse (-)
41575 .. 42369
795 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006986.1_g000016.1.cds

Sequence Viewer

Length: 570 bp
atggcagcccaatttgaagaacaattggatcgtgctaaaggaggaaaacgaaaagtgactaatagacgcgaaatgggcttccggagtcctattgggatgcacctttccttttcggaaatggaatcgcgccaaaatcaaactcgtcgctttgccacgacctgtggcctttttcgggcttccgagaatcctttgcttaggtttattgctggtaaacctagttataaatccgtctgcgacaggtggtatcagaggaggtcttccctgtctctcctatttaccttggtagcaatgggtgaagttacaaaattagatatcgaagctctcacagcagcgtttactgcagccatcaacaccatgaacaatcggatggaccagcagaccaatcggatggaccagcagattggagaaattcgtgggttgttgggagagacaaacaaccacaacaacaacgatcggaatagaggcagggaaggaggccagcgagttagggctccacgtagagaggttgttgttcatacttcagaatctgagtctgaagaagagatcgtgcaatatgaacctcaaggataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

189

Amino Acids

21.64

Weight (kDa)

9.55

Isoelectric Point (pI)

57.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000291)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00860
fragaria_vesca FvH4_1g23712 FvH4_1g29809 FvH4_1g29810 FvH4_2g02661 FvH4_2g13451 FvH4_2g17921 FvH4_2g17922 FvH4_2g19251 FvH4_2g19252 FvH4_2g28221 FvH4_2g35961 FvH4_3g10372 FvH4_3g12461 FvH4_3g12461 FvH4_3g27861 FvH4_3g34591 FvH4_3g40201 FvH4_3g44612 FvH4_4g08352 FvH4_4g12251 FvH4_4g12742 FvH4_4g13904 FvH4_4g14287 FvH4_4g15243 FvH4_4g24071 FvH4_4g33448 FvH4_5g21912 FvH4_5g39371 FvH4_6g14992 FvH4_6g15221 FvH4_6g20603 FvH4_6g31093 FvH4_6g32372 FvH4_6g33012
malus_domestica MD11G1009100.v1.1 MD13G1145000.v1.1 MD16G1138700.v1.1
prunus_persica Prupe.5G246300_v2.0.a1 Prupe.7G034800_v2.0.a1 Prupe.8G084500_v2.0.a1
pyrus_communis pycom01g18240 pycom04g00330 pycom05g09010 pycom06g01670 pycom06g01690 pycom06g07180 pycom06g11620 pycom10g05720 pycom1134g00040 pycom1134g00060 pycom12486g00010 pycom12555g00230 pycom13g21670 pycom13g23130 pycom13g23140 pycom14g10580
rosa_chinensis RchiOBHm_Chr1g0330691 RchiOBHm_Chr2g0106171 RchiOBHm_Chr2g0134731 RchiOBHm_Chr2g0142791 RchiOBHm_Chr2g0149861 RchiOBHm_Chr3g0452401 RchiOBHm_Chr3g0461881 RchiOBHm_Chr4g0401341 RchiOBHm_Chr5g0075641 RchiOBHm_Chr6g0265961 RchiOBHm_Chr7g0200201 RchiOBHm_Chr7g0237811
rosa_laevigata RLG00000002773
rosa_multiflora Rmu_co8037806.1_g000001 Rmu_co8445989.1_g000001 Rmu_sc0000745.1_g000039 Rmu_sc0004448.1_g000029 Rmu_sc0004488.1_g000002 Rmu_sc0004591.1_g000018 Rmu_sc0005065.1_g000030 Rmu_sc0005150.1_g000005 Rmu_sc0005654.1_g000011 Rmu_sc0006986.1_g000016
rosa_roxburghii Rroxscaffold_164G00436490 Rroxscaffold_175G00432490 Rroxscaffold_1G00059440 Rroxscaffold_1G00064410 Rroxscaffold_2G00100310 Rroxscaffold_2G00128170 Rroxscaffold_3G00239420 Rroxscaffold_3G00264970 Rroxscaffold_3G00271550 Rroxscaffold_4G00300240 Rroxscaffold_5G00385050 Rroxscaffold_6G00399720
rosa_rugosa Rorug02G0252200
rosa_samantha Rh2DG251900 Rh7CG329900
rosa_wichuraiana Rw0G004800 Rw1G000850 Rw1G022350 Rw2G027030 Rw2G027760 Rw2G028410 Rw2G029130 Rw2G029390 Rw2G032490 Rw2G039460 Rw2G047800 Rw2G050340 Rw3G026430 Rw4G018370 Rw4G030750 Rw4G033140 Rw5G011950 Rw5G012010 Rw5G029280 Rw5G040190 Rw5G044570 Rw5G048240 Rw6G000340 Rw6G010140 Rw6G026480 Rw7G033750 Rw7G037250 Rw7G042080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 222
AccII CGCG 2 cut(s) 69, 127
AccIII TCCGGA 1 cut(s) 81
AclWI GGATC 1 cut(s) 36
AcsI RAATTY 1 cut(s) 408
AcuI CTGAAG 2 cut(s) 504, 555
AfiI CCNNNNNNNGG 1 cut(s) 172
AgsI TTSAA 1 cut(s) 17
AluBI AGCT 1 cut(s) 320
AluI AGCT 1 cut(s) 320
Alw26I GTCTC 2 cut(s) 270, 422
AlwI GGATC 1 cut(s) 36
AlwNI CAGNNNCTG 1 cut(s) 527
Aor13HI TCCGGA 1 cut(s) 81
AoxI GGCC 2 cut(s) 163, 475
ApeKI GCWGC 3 cut(s) 5, 329, 341
ApoI RAATTY 1 cut(s) 408
AspLEI GCGC 1 cut(s) 129
AspS9I GGNCC 2 cut(s) 370, 391
AsuHPI GGTGA 1 cut(s) 305
AvaII GGWCC 2 cut(s) 370, 391
BanII GRGCYC 1 cut(s) 493
BbsI GAAGAC 1 cut(s) 249
BbvI GCAGC 3 cut(s) 17, 341, 353
BccI CCATC 3 cut(s) 353, 361, 382
BcgI CGANNNNNNTGC 2 cut(s) 365, 399
BcoDI GTCTC 2 cut(s) 270, 422
BfaI CTAG 1 cut(s) 216
BfmI CTRYAG 1 cut(s) 339
BisI GCNGC 3 cut(s) 6, 330, 342
BlsI GCNGC 3 cut(s) 7, 331, 343
Bme18I GGWCC 2 cut(s) 370, 391
BmgT120I GGNCC 2 cut(s) 370, 391
BmiI GGNNCC 1 cut(s) 492
BmsI GCATC 1 cut(s) 87
BpiI GAAGAC 1 cut(s) 249
Bpu10I CCTNAGC 1 cut(s) 194
BpuEI CTTGAG 1 cut(s) 546
BsaAI YACGTR 1 cut(s) 497
BsaJI CCNNGG 1 cut(s) 279
BsaWI WCCGGW 1 cut(s) 81
Bsc4I CCNNNNNNNGG 1 cut(s) 172
Bse3DI GCAATG 1 cut(s) 294
BseAI TCCGGA 1 cut(s) 81
BseDI CCNNGG 1 cut(s) 279
BseGI GGATG 3 cut(s) 102, 372, 393
BseLI CCNNNNNNNGG 1 cut(s) 172
BseMI GCAATG 1 cut(s) 294
BseMII CTCAG 1 cut(s) 519
BseRI GAGGAG 1 cut(s) 265
BseXI GCAGC 3 cut(s) 17, 341, 353
Bsh1236I CGCG 2 cut(s) 69, 127
Bsh1285I CGRYCG 1 cut(s) 454
BshFI GGCC 2 cut(s) 165, 477
BsiEI CGRYCG 1 cut(s) 454
BsiSI CCGG 1 cut(s) 82
BslI CCNNNNNNNGG 1 cut(s) 172
BsmAI GTCTC 2 cut(s) 270, 422
BsnI GGCC 2 cut(s) 165, 477
Bsp1286I GDGCHC 1 cut(s) 493
Bsp13I TCCGGA 1 cut(s) 81
Bsp143I GATC 3 cut(s) 28, 451, 543
BspANI GGCC 2 cut(s) 165, 477
BspCNI CTCAG 1 cut(s) 520
BspEI TCCGGA 1 cut(s) 81
BspFNI CGCG 2 cut(s) 69, 127
BspLI GGNNCC 1 cut(s) 492
BspMAI CTGCAG 1 cut(s) 343
BspPI GGATC 1 cut(s) 36
BsrDI GCAATG 1 cut(s) 294
BssECI CCNNGG 1 cut(s) 279
BssMI GATC 3 cut(s) 28, 451, 543
BssT1I CCWWGG 1 cut(s) 279
Bst6I CTCTTC 1 cut(s) 534
BstBAI YACGTR 1 cut(s) 497
BstC8I GCNNGC 1 cut(s) 479
BstDEI CTNAG 2 cut(s) 194, 528
BstF5I GGATG 3 cut(s) 102, 372, 393
BstFNI CGCG 2 cut(s) 69, 127
BstHHI GCGC 1 cut(s) 129
BstKTI GATC 3 cut(s) 31, 454, 546
BstMAI GTCTC 2 cut(s) 270, 422
BstMBI GATC 3 cut(s) 28, 451, 543
BstMCI CGRYCG 1 cut(s) 454
BstMWI GCNNNNNNNGC 3 cut(s) 75, 326, 338
BstSFI CTRYAG 1 cut(s) 339
BstUI CGCG 2 cut(s) 69, 127
BstV1I GCAGC 3 cut(s) 17, 341, 353
BstV2I GAAGAC 1 cut(s) 249
BstXI CCANNNNNNTGG 2 cut(s) 388, 401
BsuRI GGCC 2 cut(s) 165, 477
BtsCI GGATG 3 cut(s) 102, 372, 393
Cac8I GCNNGC 1 cut(s) 479
CaiI CAGNNNCTG 1 cut(s) 527
CfoI GCGC 1 cut(s) 129
Cfr13I GGNCC 2 cut(s) 370, 391
CseI GACGC 1 cut(s) 75
CviAII CATG 1 cut(s) 355
CviJI RGCY 8 cut(s) 8, 78, 165, 176, 320, 344, 477, 491
CviKI_1 RGCY 8 cut(s) 8, 78, 165, 176, 320, 344, 477, 491
DdeI CTNAG 2 cut(s) 194, 528
DpnI GATC 3 cut(s) 30, 453, 545
DpnII GATC 3 cut(s) 28, 451, 543
Eam1104I CTCTTC 1 cut(s) 534
EarI CTCTTC 1 cut(s) 534
Eco130I CCWWGG 1 cut(s) 279
Eco24I GRGCYC 1 cut(s) 493
Eco32I GATATC 1 cut(s) 313
Eco47I GGWCC 2 cut(s) 370, 391
Eco57I CTGAAG 2 cut(s) 504, 555
EcoRV GATATC 1 cut(s) 313
EcoT14I CCWWGG 1 cut(s) 279
EcoT38I GRGCYC 1 cut(s) 493
ErhI CCWWGG 1 cut(s) 279
FaeI CATG 1 cut(s) 358
FaiI YATR 4 cut(s) 222, 356, 516, 555
FatI CATG 1 cut(s) 354
Fnu4HI GCNGC 3 cut(s) 6, 330, 342
FokI GGATG 3 cut(s) 109, 379, 400
FriOI GRGCYC 1 cut(s) 493
Fsp4HI GCNGC 3 cut(s) 6, 330, 342
FspBI CTAG 1 cut(s) 216
GlaI GCGC 1 cut(s) 128
GluI GCNGC 3 cut(s) 6, 330, 342
HaeIII GGCC 2 cut(s) 165, 477
HapII CCGG 1 cut(s) 82
HgaI GACGC 1 cut(s) 75
HhaI GCGC 1 cut(s) 129
Hin1II CATG 1 cut(s) 358
Hin6I GCGC 1 cut(s) 127
HinP1I GCGC 1 cut(s) 127
HinfI GANTC 5 cut(s) 85, 122, 184, 524, 530
HpaII CCGG 1 cut(s) 82
HphI GGTGA 1 cut(s) 305
Hpy166II GTNNAC 2 cut(s) 212, 336
Hpy188I TCNGA 9 cut(s) 115, 181, 249, 366, 387, 456, 523, 529, 535
Hpy188III TCNNGA 1 cut(s) 82
Hpy8I GTNNAC 2 cut(s) 212, 336
Hpy99I CGWCG 1 cut(s) 147
HpyAV CCTTC 1 cut(s) 464
HpyCH4IV ACGT 1 cut(s) 496
HpyCH4V TGCA 3 cut(s) 100, 341, 550
HpyF10VI GCNNNNNNNGC 3 cut(s) 75, 326, 338
HpyF3I CTNAG 2 cut(s) 194, 528
HpySE526I ACGT 1 cut(s) 496
Hsp92II CATG 1 cut(s) 358
HspAI GCGC 1 cut(s) 127
Kpn2I TCCGGA 1 cut(s) 81
Kzo9I GATC 3 cut(s) 28, 451, 543
LmnI GCTCC 1 cut(s) 496
LpnPI CCDG 9 cut(s) 95, 172, 192, 223, 275, 386, 407, 451, 491
Lsp1109I GCAGC 3 cut(s) 17, 341, 353
LweI GCATC 1 cut(s) 87
MaeI CTAG 1 cut(s) 216
MaeII ACGT 1 cut(s) 496
MaeIII GTNAC 2 cut(s) 55, 298
MalI GATC 3 cut(s) 30, 453, 545
MboI GATC 3 cut(s) 28, 451, 543
MboII GAAGA 4 cut(s) 29, 249, 548, 551
MfeI CAATTG 1 cut(s) 23
MhlI GDGCHC 1 cut(s) 493
MluCI AATT 4 cut(s) 11, 23, 305, 408
MlyI GAGTC 2 cut(s) 94, 539
MnlI CCTC 7 cut(s) 35, 243, 246, 455, 467, 496, 570
MroI TCCGGA 1 cut(s) 81
MspI CCGG 1 cut(s) 82
MunI CAATTG 1 cut(s) 23
MvnI CGCG 2 cut(s) 69, 127
MwoI GCNNNNNNNGC 3 cut(s) 75, 326, 338
NdeII GATC 3 cut(s) 28, 451, 543
NlaIII CATG 1 cut(s) 358
NlaIV GGNNCC 1 cut(s) 492
NmuCI GTSAC 1 cut(s) 55
PfeI GAWTC 3 cut(s) 122, 184, 524
PkrI GCNGC 3 cut(s) 7, 331, 343
Ple19I CGATCG 1 cut(s) 454
PleI GAGTC 2 cut(s) 93, 538
PpsI GAGTC 2 cut(s) 93, 538
Ppu21I YACGTR 1 cut(s) 497
PsiI TTATAA 1 cut(s) 222
PspN4I GGNNCC 1 cut(s) 492
PspPI GGNCC 2 cut(s) 370, 391
PstI CTGCAG 1 cut(s) 343
PstNI CAGNNNCTG 1 cut(s) 527
PvuI CGATCG 1 cut(s) 454
SatI GCNGC 3 cut(s) 6, 330, 342
Sau3AI GATC 3 cut(s) 28, 451, 543
Sau96I GGNCC 2 cut(s) 370, 391
SchI GAGTC 2 cut(s) 94, 539
SduI GDGCHC 1 cut(s) 493
SfaNI GCATC 1 cut(s) 87
SfcI CTRYAG 1 cut(s) 339
SinI GGWCC 2 cut(s) 370, 391
SmlI CTYRAG 1 cut(s) 561
SmoI CTYRAG 1 cut(s) 561
Sse9I AATT 4 cut(s) 11, 23, 305, 408
SspMI CTAG 1 cut(s) 216
StyI CCWWGG 1 cut(s) 279
TaiI ACGT 1 cut(s) 499
TaqI TCGA 1 cut(s) 315
TasI AATT 4 cut(s) 11, 23, 305, 408
TfiI GAWTC 3 cut(s) 122, 184, 524
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 3 cut(s) 5, 329, 341
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 3 cut(s) 371, 503, 570
TspGWI ACGGA 1 cut(s) 217
VpaK11BI GGWCC 2 cut(s) 370, 391
XapI RAATTY 1 cut(s) 408
XspI CTAG 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.