Rw7G042080
ERF Family

DNA RNA polymerases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000291
Physical Location & Seq
Forward (+)
65756436 .. 65758651
2216 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G042080.1

Sequence Viewer

Length: 2067 bp
ATGGGTGAAGTTACAAAATCAGATATCGAAGCTCTCACGGCAGCGTTTACCGCTGCCATCAACACCATGAGCAATCGGATGGAGCAGCAGATTGGAGAAATTCGTGGGTTGTTGGGAGAGAGAAACAACCACAACAACAACAACAACGATCGGAATAGAGGCAGGGAAGGAGGCCAGCGAGTTAGGGCTCCACGTAGAGATGTTGTTGTTCATACTTCAGAATCTGAGTCTGAAGAAGAGATCGTGCAAGATGAACCTCAAGGACAAGCTGACCAAGATTACAAAGTCAAGGCCGAAATTCCTTTCTTTTCGGGCAACTTGGGTGTAGAAGATTATCTAGACTGGCAGCTTCAGGTGGACAGTTTCTTTGAGATTATGGAAGTTCCTGAACACAAGCAGGTTAAGCATGTTGCATGGAGATTGAAGAGTACTGCTGCAGTTTGGTGGGATAAATTGCAGAACACTCGAAAGAAGCAGAGGAAGCAGGGTCAGTTGATGATGGAGAGGTTCTTGCCGGACGATTATGAGAAGATTTTGTATAGGTTGTATATTGAATGTGTCCAGGGAACCAGGACAGTGGCTGATTACACCGCTGAGTTCTTACGCTACTCAGAGCGTAATGAATTAGGAGAAACTGAGGGGCAGAAGGTGGCTCGATATGTCAGTGGGCTGAAACCTTCCATTCAGGAGAAAATCGGGTTGCAAACTGTTCATACTATGGCAGAAGCTTCAAACCTAGCATTGAAGGCAGAGTTGTTAGAGAAGCCTTCACGAGCTTCTTCTTTCCAGAGATATAACTACCAAAGGAGCACAGATTTAGCAAACGCCTCAACTGACAAAGGTAAACCCACACTGCAGAAAACAGAACTGCAGAAGACAGAAGGTGTTTTTAGGGCTTCCAATCCTCCTTTTAAAGGGGCTGGCAGTTCCAATGTTTGTTATCGATGCAACAAGCCTGGTCATAGATCTAATGTATGCCCTGAGAGGAGAGCTGCCCTTATAGACGATTATGATGAAGAAGAAGAAGAAGTTGGAAGAGATGGCGATTATGATGGGGCTGAGTTTGCAGAGGAGGAATCTCCTGAAAAGATTAATATTGTGTTGCAGCGGGTTCTACTATGTCCTAAAGAAGAGGGGCAGCGGCGCAATATATTCAGGTCACTTTGTTCCATTAATAACAAAGTGTGCAATTTAATTGTAGATAATGGAAGCTGCGAAAATTTTGTAGCCAAGAAACTGGTGGAGTATTTGCAGTTACCTACACAGCCTCATGAGACACCTTATTCCCTCGGGTGGGTCAAGAAAGGTCCACAAATGAGGTTTTGTGTGACATATATTATTGATATGGATGCTTGTCACATTTTGTTTGGACGACCTTGGCAATATGATGTGGATGTGACTTATAAAGGCACGGACAATGTGATGTTGTTTATGTGGAATAACCATAAAATTGCTATGGCTCCTGTTTGTCAATTTGAGAAATCTGGTGTGAAGAAAGGGGAGAGTTTCCTGACCTTGTCTAGCAGTGAACTTGAGATGGAGAAGGCCTTTAAAGAATCTGAGGTTTTCTGTCCAGTGGTGATAAAGGGGTTGTTGTCTGCAGAAAAGGAAGAAGTGGTGATCCCCAAAGAAGTGCAGGACATGTTGGGGGAATTTGAAGAACTGATCTCGGATGAGTTGCCCAACGAACTGCCACCTATGAGAGACATTCAACATCAGATTGATTTGGTGCCTGGAGCTAGCTTACCCAATCTGCCACATTACCGCATGAGTCCCAAGGAGAATGAGATTTTGAGAGAGCAGATTGAAGACTTGTTGAAAAAAGGGTTCATTCGAGAGAGTATGAGTCCTTGTGCAGTTCCAATCCTCCTTGTTCCTAAGAAGGGCAATCAATGGCGGATGTGTGTTGATAGCAGGGCCATTAATAAGATAACTGTGAAGTACAGGTTCCCTATTCCTCGTTTGGAAGACATGCTTGATGAGCTAGAGGGTTCCAAAGTGTTTACCAAGATAGACCTTTGTTGTGAAATTTTAATTAAAACTCGCAAGCGCACGAATCGTCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 Retrotrans_gag rve zf-H2C2

Protein Analysis

688

Amino Acids

78.98

Weight (kDa)

5.69

Isoelectric Point (pI)

48.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotrans_gag PF03732 136 - 226 8.1e-08 Retrotransposon gag protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000291)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00860
fragaria_vesca FvH4_1g23712 FvH4_1g29809 FvH4_1g29810 FvH4_2g02661 FvH4_2g13451 FvH4_2g17921 FvH4_2g17922 FvH4_2g19251 FvH4_2g19252 FvH4_2g28221 FvH4_2g35961 FvH4_3g10372 FvH4_3g12461 FvH4_3g12461 FvH4_3g27861 FvH4_3g34591 FvH4_3g40201 FvH4_3g44612 FvH4_4g08352 FvH4_4g12251 FvH4_4g12742 FvH4_4g13904 FvH4_4g14287 FvH4_4g15243 FvH4_4g24071 FvH4_4g33448 FvH4_5g21912 FvH4_5g39371 FvH4_6g14992 FvH4_6g15221 FvH4_6g20603 FvH4_6g31093 FvH4_6g32372 FvH4_6g33012
malus_domestica MD11G1009100.v1.1 MD13G1145000.v1.1 MD16G1138700.v1.1
prunus_persica Prupe.5G246300_v2.0.a1 Prupe.7G034800_v2.0.a1 Prupe.8G084500_v2.0.a1
pyrus_communis pycom01g18240 pycom04g00330 pycom05g09010 pycom06g01670 pycom06g01690 pycom06g07180 pycom06g11620 pycom10g05720 pycom1134g00040 pycom1134g00060 pycom12486g00010 pycom12555g00230 pycom13g21670 pycom13g23130 pycom13g23140 pycom14g10580
rosa_chinensis RchiOBHm_Chr1g0330691 RchiOBHm_Chr2g0106171 RchiOBHm_Chr2g0134731 RchiOBHm_Chr2g0142791 RchiOBHm_Chr2g0149861 RchiOBHm_Chr3g0452401 RchiOBHm_Chr3g0461881 RchiOBHm_Chr4g0401341 RchiOBHm_Chr5g0075641 RchiOBHm_Chr6g0265961 RchiOBHm_Chr7g0200201 RchiOBHm_Chr7g0237811
rosa_laevigata RLG00000002773
rosa_multiflora Rmu_co8037806.1_g000001 Rmu_co8445989.1_g000001 Rmu_sc0000745.1_g000039 Rmu_sc0004448.1_g000029 Rmu_sc0004488.1_g000002 Rmu_sc0004591.1_g000018 Rmu_sc0005065.1_g000030 Rmu_sc0005150.1_g000005 Rmu_sc0005654.1_g000011 Rmu_sc0006986.1_g000016
rosa_roxburghii Rroxscaffold_164G00436490 Rroxscaffold_175G00432490 Rroxscaffold_1G00059440 Rroxscaffold_1G00064410 Rroxscaffold_2G00100310 Rroxscaffold_2G00128170 Rroxscaffold_3G00239420 Rroxscaffold_3G00264970 Rroxscaffold_3G00271550 Rroxscaffold_4G00300240 Rroxscaffold_5G00385050 Rroxscaffold_6G00399720
rosa_rugosa Rorug02G0252200
rosa_samantha Rh2DG251900 Rh7CG329900
rosa_wichuraiana Rw0G004800 Rw1G000850 Rw1G022350 Rw2G027030 Rw2G027760 Rw2G028410 Rw2G029130 Rw2G029390 Rw2G032490 Rw2G039460 Rw2G047800 Rw2G050340 Rw3G026430 Rw4G018370 Rw4G030750 Rw4G033140 Rw5G011950 Rw5G012010 Rw5G029280 Rw5G040190 Rw5G044570 Rw5G048240 Rw6G000340 Rw6G010140 Rw6G026480 Rw7G033750 Rw7G037250 Rw7G042080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1404
Acc36I ACCTGC 1 cut(s) 388
AccB1I GGYRCC 1 cut(s) 1729
AciI CCGC 6 cut(s) 51, 591, 1108, 1141, 1765, 1897
AclWI GGATC 1 cut(s) 1615
AcsI RAATTY 5 cut(s) 99, 297, 1219, 1652, 2028
AcuI CTGAAG 3 cut(s) 201, 252, 335
AfaI GTAC 2 cut(s) 430, 1943
AfiI CCNNNNNNNGG 4 cut(s) 914, 1293, 1294, 1883
AflIII ACRYGT 1 cut(s) 1641
AgsI TTSAA 8 cut(s) 424, 554, 732, 745, 1658, 1712, 1808, 1819
AjnI CCWGG 4 cut(s) 561, 569, 955, 1732
AjuI GAANNNNNNNTTGG 2 cut(s) 1014, 1046
Alw21I GWGCWC 1 cut(s) 812
Alw26I GTCTC 2 cut(s) 1268, 1698
AlwI GGATC 1 cut(s) 1615
AlwNI CAGNNNCTG 2 cut(s) 224, 581
Ama87I CYCGRG 1 cut(s) 1289
AoxI GGCC 4 cut(s) 172, 291, 1545, 1917
ApeKI GCWGC 9 cut(s) 41, 53, 85, 346, 434, 992, 1105, 1138, 1212
ApoI RAATTY 5 cut(s) 99, 297, 1219, 1652, 2028
ArsI GACNNNNNNTTYG 2 cut(s) 350, 382
AseI ATTAAT 3 cut(s) 1092, 1173, 1923
AspLEI GCGC 2 cut(s) 1146, 2052
AspS9I GGNCC 2 cut(s) 1307, 1917
AsuHPI GGTGA 3 cut(s) 17, 1591, 1630
AsuNHI GCTAGC 1 cut(s) 1739
AvaI CYCGRG 1 cut(s) 1289
AvaII GGWCC 1 cut(s) 1307
BanI GGYRCC 1 cut(s) 1729
BanII GRGCYC 1 cut(s) 190
BauI CACGAG 1 cut(s) 771
BbsI GAAGAC 3 cut(s) 881, 1815, 1974
Bbv12I GWGCWC 1 cut(s) 812
BbvI GCAGC 9 cut(s) 40, 53, 97, 358, 421, 979, 1117, 1150, 1199
BccI CCATC 6 cut(s) 65, 73, 493, 1034, 1046, 1531
BceAI ACGGC 1 cut(s) 54
BcgI CGANNNNNNTGC 2 cut(s) 446, 480
BciT130I CCWGG 4 cut(s) 563, 571, 957, 1734
BcoDI GTCTC 2 cut(s) 1268, 1698
BfaI CTAG 5 cut(s) 338, 737, 1521, 1740, 1985
BfmI CTRYAG 4 cut(s) 435, 854, 869, 1599
BfuAI ACCTGC 1 cut(s) 388
BglII AGATCT 1 cut(s) 965
BmcAI AGTACT 1 cut(s) 430
Bme1390I CCNGG 4 cut(s) 563, 571, 957, 1734
Bme18I GGWCC 1 cut(s) 1307
BmeT110I CYCGRG 1 cut(s) 1289
BmgT120I GGNCC 2 cut(s) 1307, 1917
BmiI GGNNCC 6 cut(s) 189, 568, 1461, 1731, 1949, 1993
BmrFI CCNGG 4 cut(s) 563, 571, 957, 1734
BmsI GCATC 2 cut(s) 935, 1339
BmtI GCTAGC 1 cut(s) 1743
BpiI GAAGAC 3 cut(s) 881, 1815, 1974
BpmI CTGGAG 1 cut(s) 1755
BpuEI CTTGAG 2 cut(s) 243, 1553
Bsa29I ATCGAT 1 cut(s) 943
BsaAI YACGTR 1 cut(s) 194
BsaJI CCNNGG 4 cut(s) 562, 1288, 1376, 1776
Bsc4I CCNNNNNNNGG 4 cut(s) 914, 1293, 1294, 1883
Bse1I ACTGG 3 cut(s) 347, 1242, 1574
BseBI CCWGG 4 cut(s) 563, 571, 957, 1734
BseCI ATCGAT 1 cut(s) 943
BseDI CCNNGG 4 cut(s) 562, 1288, 1376, 1776
BseGI GGATG 5 cut(s) 84, 1354, 1399, 1678, 1905
BseLI CCNNNNNNNGG 4 cut(s) 914, 1293, 1294, 1883
BseMII CTCAG 7 cut(s) 216, 585, 624, 627, 972, 1050, 1551
BseNI ACTGG 3 cut(s) 347, 1242, 1574
BseRI GAGGAG 2 cut(s) 1000, 1085
BseXI GCAGC 9 cut(s) 40, 53, 97, 358, 421, 979, 1117, 1150, 1199
BsgI GTGCAG 2 cut(s) 1655, 1875
Bsh1285I CGRYCG 1 cut(s) 151
BshFI GGCC 4 cut(s) 174, 293, 1547, 1919
BshNI GGYRCC 1 cut(s) 1729
BshVI ATCGAT 1 cut(s) 943
BsiEI CGRYCG 1 cut(s) 151
BsiHKAI GWGCWC 1 cut(s) 812
BsiHKCI CYCGRG 1 cut(s) 1289
BsiSI CCGG 1 cut(s) 515
BslFI GGGAC 1 cut(s) 1758
BslI CCNNNNNNNGG 4 cut(s) 914, 1293, 1294, 1883
BsmAI GTCTC 2 cut(s) 1268, 1698
BsmFI GGGAC 1 cut(s) 1758
BsnI GGCC 4 cut(s) 174, 293, 1547, 1919
BsoBI CYCGRG 1 cut(s) 1289
Bsp1286I GDGCHC 2 cut(s) 190, 812
Bsp143I GATC 5 cut(s) 148, 240, 965, 1620, 1665
BspACI CCGC 6 cut(s) 51, 591, 1108, 1141, 1765, 1897
BspANI GGCC 4 cut(s) 174, 293, 1547, 1919
BspCNI CTCAG 7 cut(s) 217, 586, 623, 628, 973, 1051, 1552
BspDI ATCGAT 1 cut(s) 943
BspHI TCATGA 1 cut(s) 1270
BspLI GGNNCC 6 cut(s) 189, 568, 1461, 1731, 1949, 1993
BspMAI CTGCAG 4 cut(s) 439, 858, 873, 1603
BspMI ACCTGC 1 cut(s) 388
BspOI GCTAGC 1 cut(s) 1743
BspPI GGATC 1 cut(s) 1615
BspT107I GGYRCC 1 cut(s) 1729
BsrI ACTGG 3 cut(s) 347, 1242, 1574
BssECI CCNNGG 4 cut(s) 562, 1288, 1376, 1776
BssMI GATC 5 cut(s) 148, 240, 965, 1620, 1665
BssSI CACGAG 1 cut(s) 771
BssT1I CCWWGG 2 cut(s) 1376, 1776
Bst2BI CACGAG 1 cut(s) 771
Bst2UI CCWGG 4 cut(s) 563, 571, 957, 1734
Bst4CI ACNGT 4 cut(s) 362, 577, 709, 1936
Bst6I CTCTTC 4 cut(s) 231, 419, 1030, 1125
BstBAI YACGTR 1 cut(s) 194
BstC8I GCNNGC 4 cut(s) 176, 922, 1741, 2048
BstDEI CTNAG 8 cut(s) 225, 594, 610, 636, 981, 1059, 1560, 1878
BstENI CCTNNNNNAGG 1 cut(s) 912
BstF5I GGATG 5 cut(s) 84, 1354, 1399, 1678, 1905
BstHHI GCGC 2 cut(s) 1146, 2052
BstKTI GATC 5 cut(s) 151, 243, 968, 1623, 1668
BstMAI GTCTC 2 cut(s) 1268, 1698
BstMBI GATC 5 cut(s) 148, 240, 965, 1620, 1665
BstMCI CGRYCG 1 cut(s) 151
BstMWI GCNNNNNNNGC 7 cut(s) 38, 50, 403, 481, 746, 1064, 1981
BstNI CCWGG 4 cut(s) 563, 571, 957, 1734
BstNSI RCATGY 3 cut(s) 410, 1645, 1975
BstSCI CCNGG 4 cut(s) 561, 569, 955, 1732
BstSFI CTRYAG 4 cut(s) 435, 854, 869, 1599
BstV1I GCAGC 9 cut(s) 40, 53, 97, 358, 421, 979, 1117, 1150, 1199
BstV2I GAAGAC 3 cut(s) 881, 1815, 1974
BstX2I RGATCY 1 cut(s) 965
BstXI CCANNNNNNTGG 2 cut(s) 577, 1237
BstYI RGATCY 1 cut(s) 965
Bsu15I ATCGAT 1 cut(s) 943
BsuRI GGCC 4 cut(s) 174, 293, 1547, 1919
BsuTUI ATCGAT 1 cut(s) 943
BtsCI GGATG 5 cut(s) 84, 1354, 1399, 1678, 1905
BtsI GCAGTG 2 cut(s) 851, 1531
BtsIMutI CAGTG 5 cut(s) 582, 670, 851, 1531, 1581
BveI ACCTGC 1 cut(s) 388
Cac8I GCNNGC 4 cut(s) 176, 922, 1741, 2048
CaiI CAGNNNCTG 2 cut(s) 224, 581
CciI TCATGA 1 cut(s) 1270
CfoI GCGC 2 cut(s) 1146, 2052
Cfr13I GGNCC 2 cut(s) 1307, 1917
ClaI ATCGAT 1 cut(s) 943
Csp6I GTAC 2 cut(s) 429, 1942
CviAII CATG 7 cut(s) 67, 407, 414, 1271, 1642, 1768, 1972
CviQI GTAC 2 cut(s) 429, 1942
DdeI CTNAG 8 cut(s) 225, 594, 610, 636, 981, 1059, 1560, 1878
DpnI GATC 5 cut(s) 150, 242, 967, 1622, 1667
DpnII GATC 5 cut(s) 148, 240, 965, 1620, 1665
DraI TTTAAA 2 cut(s) 913, 1552
Eam1104I CTCTTC 4 cut(s) 231, 419, 1030, 1125
EarI CTCTTC 4 cut(s) 231, 419, 1030, 1125
EciI GGCGGA 1 cut(s) 1912
Eco130I CCWWGG 2 cut(s) 1376, 1776
Eco147I AGGCCT 1 cut(s) 1547
Eco24I GRGCYC 1 cut(s) 190
Eco32I GATATC 1 cut(s) 25
Eco47I GGWCC 1 cut(s) 1307
Eco57I CTGAAG 3 cut(s) 201, 252, 335
Eco88I CYCGRG 1 cut(s) 1289
EcoNI CCTNNNNNAGG 1 cut(s) 912
EcoRII CCWGG 4 cut(s) 561, 569, 955, 1732
EcoRV GATATC 1 cut(s) 25
EcoT14I CCWWGG 2 cut(s) 1376, 1776
EcoT38I GRGCYC 1 cut(s) 190
ErhI CCWWGG 2 cut(s) 1376, 1776
FaeI CATG 7 cut(s) 70, 410, 417, 1274, 1645, 1771, 1975
FalI AAGNNNNNCTT 2 cut(s) 1959, 1991
FaqI GGGAC 1 cut(s) 1758
FatI CATG 7 cut(s) 66, 406, 413, 1270, 1641, 1767, 1971
FauI CCCGC 1 cut(s) 1101
FokI GGATG 5 cut(s) 91, 1361, 1406, 1685, 1912
FriOI GRGCYC 1 cut(s) 190
FspBI CTAG 5 cut(s) 338, 737, 1521, 1740, 1985
GlaI GCGC 2 cut(s) 1145, 2051
GsuI CTGGAG 1 cut(s) 1755
HaeIII GGCC 4 cut(s) 174, 293, 1547, 1919
HapII CCGG 1 cut(s) 515
HhaI GCGC 2 cut(s) 1146, 2052
Hin1II CATG 7 cut(s) 70, 410, 417, 1274, 1645, 1771, 1975
Hin6I GCGC 2 cut(s) 1144, 2050
HinP1I GCGC 2 cut(s) 1144, 2050
HindIII AAGCTT 1 cut(s) 726
HinfI GANTC 7 cut(s) 221, 227, 1076, 1556, 1771, 1846, 2056
HpaII CCGG 1 cut(s) 515
HphI GGTGA 3 cut(s) 17, 1591, 1630
Hpy166II GTNNAC 6 cut(s) 48, 358, 845, 1310, 1529, 2004
Hpy8I GTNNAC 6 cut(s) 48, 358, 845, 1310, 1529, 2004
Hpy99I CGWCG 1 cut(s) 2064
HpyAV CCTTC 8 cut(s) 161, 640, 687, 739, 777, 875, 1537, 1876
HpyCH4III ACNGT 4 cut(s) 362, 577, 709, 1936
HpyCH4IV ACGT 1 cut(s) 193
HpyF10VI GCNNNNNNNGC 7 cut(s) 38, 50, 403, 481, 746, 1064, 1981
HpyF3I CTNAG 8 cut(s) 225, 594, 610, 636, 981, 1059, 1560, 1878
HpySE526I ACGT 1 cut(s) 193
Hsp92II CATG 7 cut(s) 70, 410, 417, 1274, 1645, 1771, 1975
HspAI GCGC 2 cut(s) 1144, 2050
Kzo9I GATC 5 cut(s) 148, 240, 965, 1620, 1665
LmnI GCTCC 5 cut(s) 82, 193, 807, 1465, 1736
Lsp1109I GCAGC 9 cut(s) 40, 53, 97, 358, 421, 979, 1117, 1150, 1199
LweI GCATC 2 cut(s) 935, 1339
MaeI CTAG 5 cut(s) 338, 737, 1521, 1740, 1985
MaeII ACGT 1 cut(s) 193
MaeIII GTNAC 6 cut(s) 10, 1158, 1254, 1327, 1355, 1396
MalI GATC 5 cut(s) 150, 242, 967, 1622, 1667
MboI GATC 5 cut(s) 148, 240, 965, 1620, 1665
MflI RGATCY 1 cut(s) 965
MhlI GDGCHC 2 cut(s) 190, 812
MlyI GAGTC 3 cut(s) 236, 1780, 1855
MmeI TCCRAC 1 cut(s) 1012
MseI TTAA 9 cut(s) 402, 912, 1092, 1173, 1193, 1551, 1923, 2033, 2037
MspA1I CMGCKG 4 cut(s) 53, 593, 1108, 1141
MspI CCGG 1 cut(s) 515
MspR9I CCNGG 4 cut(s) 563, 571, 957, 1734
MvaI CCWGG 4 cut(s) 563, 571, 957, 1734
MwoI GCNNNNNNNGC 7 cut(s) 38, 50, 403, 481, 746, 1064, 1981
NdeII GATC 5 cut(s) 148, 240, 965, 1620, 1665
NheI GCTAGC 1 cut(s) 1739
NlaIII CATG 7 cut(s) 70, 410, 417, 1274, 1645, 1771, 1975
NlaIV GGNNCC 6 cut(s) 189, 568, 1461, 1731, 1949, 1993
NmuCI GTSAC 4 cut(s) 1158, 1327, 1355, 1396
NspI RCATGY 3 cut(s) 410, 1645, 1975
PacI TTAATTAA 1 cut(s) 2037
PagI TCATGA 1 cut(s) 1270
PceI AGGCCT 1 cut(s) 1547
PciI ACATGT 1 cut(s) 1641
PfeI GAWTC 4 cut(s) 221, 1076, 1556, 2056
PflFI GACNNNGTC 1 cut(s) 1516
Ple19I CGATCG 1 cut(s) 151
PleI GAGTC 3 cut(s) 235, 1779, 1854
PpsI GAGTC 3 cut(s) 235, 1779, 1854
Ppu21I YACGTR 1 cut(s) 194
PscI ACATGT 1 cut(s) 1641
PshBI ATTAAT 3 cut(s) 1092, 1173, 1923
PsiI TTATAA 1 cut(s) 1404
Psp6I CCWGG 4 cut(s) 561, 569, 955, 1732
PspGI CCWGG 4 cut(s) 561, 569, 955, 1732
PspN4I GGNNCC 6 cut(s) 189, 568, 1461, 1731, 1949, 1993
PspPI GGNCC 2 cut(s) 1307, 1917
PstI CTGCAG 4 cut(s) 439, 858, 873, 1603
PstNI CAGNNNCTG 2 cut(s) 224, 581
PsuI RGATCY 1 cut(s) 965
PsyI GACNNNGTC 1 cut(s) 1516
PvuI CGATCG 1 cut(s) 151
RsaI GTAC 2 cut(s) 430, 1943
RsaNI GTAC 2 cut(s) 429, 1942
SaqAI TTAA 9 cut(s) 402, 912, 1092, 1173, 1193, 1551, 1923, 2033, 2037
Sau3AI GATC 5 cut(s) 148, 240, 965, 1620, 1665
Sau96I GGNCC 2 cut(s) 1307, 1917
ScaI AGTACT 1 cut(s) 430
SchI GAGTC 3 cut(s) 236, 1780, 1855
ScrFI CCNGG 4 cut(s) 563, 571, 957, 1734
SduI GDGCHC 2 cut(s) 190, 812
SfaNI GCATC 2 cut(s) 935, 1339
SfcI CTRYAG 4 cut(s) 435, 854, 869, 1599
SinI GGWCC 1 cut(s) 1307
SmlI CTYRAG 2 cut(s) 258, 1532
SmoI CTYRAG 2 cut(s) 258, 1532
SseBI AGGCCT 1 cut(s) 1547
SsiI CCGC 6 cut(s) 51, 591, 1108, 1141, 1765, 1897
SspI AATATT 1 cut(s) 1096
SspMI CTAG 5 cut(s) 338, 737, 1521, 1740, 1985
StuI AGGCCT 1 cut(s) 1547
StyD4I CCNGG 4 cut(s) 561, 569, 955, 1732
StyI CCWWGG 2 cut(s) 1376, 1776
TaaI ACNGT 4 cut(s) 362, 577, 709, 1936
TaiI ACGT 1 cut(s) 196
TaqI TCGA 5 cut(s) 27, 466, 655, 943, 1834
TatI WGTACW 2 cut(s) 428, 1941
TauI GCSGC 1 cut(s) 1144
TfiI GAWTC 4 cut(s) 221, 1076, 1556, 2056
Tru1I TTAA 9 cut(s) 402, 912, 1092, 1173, 1193, 1551, 1923, 2033, 2037
Tru9I TTAA 9 cut(s) 402, 912, 1092, 1173, 1193, 1551, 1923, 2033, 2037
TscAI CASTG 5 cut(s) 582, 670, 858, 1531, 1581
TseFI GTSAC 4 cut(s) 1158, 1327, 1355, 1396
TseI GCWGC 9 cut(s) 41, 53, 85, 346, 434, 992, 1105, 1138, 1212
Tsp45I GTSAC 4 cut(s) 1158, 1327, 1355, 1396
TspDTI ATGAA 6 cut(s) 200, 267, 636, 701, 1029, 1819
TspGWI ACGGA 1 cut(s) 1427
TspRI CASTG 5 cut(s) 582, 670, 858, 1531, 1581
Tth111I GACNNNGTC 1 cut(s) 1516
VpaK11BI GGWCC 1 cut(s) 1307
VspI ATTAAT 3 cut(s) 1092, 1173, 1923
XagI CCTNNNNNAGG 1 cut(s) 912
XapI RAATTY 5 cut(s) 99, 297, 1219, 1652, 2028
XbaI TCTAGA 1 cut(s) 337
XceI RCATGY 3 cut(s) 410, 1645, 1975
XcmI CCANNNNNNNNNTGG 1 cut(s) 1237
XspI CTAG 5 cut(s) 338, 737, 1521, 1740, 1985
ZrmI AGTACT 1 cut(s) 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.