DNA RNA polymerases superfamily protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1230, 1320 |
| AccB1I | GGYRCC | 2 cut(s) | 1186, 1645 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 670 |
| AccII | CGCG | 1 cut(s) | 926 |
| AciI | CCGC | 5 cut(s) | 926, 977, 1018, 1051, 1813 |
| AclWI | GGATC | 1 cut(s) | 547 |
| AcoI | YGGCCR | 2 cut(s) | 741, 1285 |
| AcsI | RAATTY | 5 cut(s) | 87, 237, 294, 617, 1129 |
| AcuI | CTGAAG | 3 cut(s) | 249, 332, 678 |
| AcvI | CACGTG | 1 cut(s) | 191 |
| AdeI | CACNNNGTG | 1 cut(s) | 194 |
| AfaI | GTAC | 4 cut(s) | 427, 865, 1859, 2009 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 670, 920, 997, 1203, 1204, 1799 |
| AflIII | ACRYGT | 1 cut(s) | 1557 |
| AgsI | TTSAA | 9 cut(s) | 29, 421, 575, 694, 766, 1574, 1628, 1724, 1735 |
| AjnI | CCWGG | 4 cut(s) | 270, 410, 1648, 1966 |
| Alw26I | GTCTC | 2 cut(s) | 647, 1614 |
| AlwI | GGATC | 1 cut(s) | 547 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 221 |
| Ama87I | CYCGRG | 1 cut(s) | 1199 |
| AoxI | GGCC | 7 cut(s) | 169, 288, 661, 741, 1285, 1461, 1833 |
| ApoI | RAATTY | 5 cut(s) | 87, 237, 294, 617, 1129 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 347, 379 |
| AseI | ATTAAT | 1 cut(s) | 1083 |
| AspLEI | GCGC | 3 cut(s) | 926, 1056, 1174 |
| AspS9I | GGNCC | 3 cut(s) | 1217, 1461, 1833 |
| AsuHPI | GGTGA | 6 cut(s) | 17, 116, 206, 1507, 1546, 1940 |
| AsuII | TTCGAA | 2 cut(s) | 1936, 1957 |
| AsuNHI | GCTAGC | 1 cut(s) | 1655 |
| AvaI | CYCGRG | 1 cut(s) | 1199 |
| AvaII | GGWCC | 1 cut(s) | 1217 |
| BanI | GGYRCC | 2 cut(s) | 1186, 1645 |
| BanII | GRGCYC | 1 cut(s) | 187 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 225, 257 |
| BauI | CACGAG | 1 cut(s) | 792 |
| BbrPI | CACGTG | 1 cut(s) | 191 |
| BbsI | GAAGAC | 3 cut(s) | 1731, 1890, 1985 |
| BccI | CCATC | 7 cut(s) | 65, 152, 514, 944, 956, 1447, 1994 |
| BceAI | ACGGC | 1 cut(s) | 627 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 443, 477 |
| BciT130I | CCWGG | 4 cut(s) | 272, 412, 1650, 1968 |
| BcoDI | GTCTC | 2 cut(s) | 647, 1614 |
| BfaI | CTAG | 6 cut(s) | 591, 758, 945, 1437, 1656, 1901 |
| BfmI | CTRYAG | 3 cut(s) | 432, 875, 1515 |
| BmcAI | AGTACT | 1 cut(s) | 427 |
| Bme1390I | CCNGG | 4 cut(s) | 272, 412, 1650, 1968 |
| Bme18I | GGWCC | 1 cut(s) | 1217 |
| BmeT110I | CYCGRG | 1 cut(s) | 1199 |
| BmgT120I | GGNCC | 3 cut(s) | 1217, 1461, 1833 |
| BmiI | GGNNCC | 5 cut(s) | 186, 1188, 1377, 1647, 1909 |
| BmrFI | CCNGG | 4 cut(s) | 272, 412, 1650, 1968 |
| BmsI | GCATC | 1 cut(s) | 1255 |
| BmtI | GCTAGC | 1 cut(s) | 1659 |
| BpiI | GAAGAC | 3 cut(s) | 1731, 1890, 1985 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1568, 1600 |
| BpmI | CTGGAG | 2 cut(s) | 433, 1671 |
| Bpu14I | TTCGAA | 2 cut(s) | 1936, 1957 |
| BpuEI | CTTGAG | 1 cut(s) | 1469 |
| BsaAI | YACGTR | 1 cut(s) | 191 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1958 |
| BsaJI | CCNNGG | 6 cut(s) | 583, 858, 1198, 1292, 1692, 1967 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 670, 920, 997, 1203, 1204, 1799 |
| Bse118I | RCCGGY | 1 cut(s) | 1168 |
| Bse1I | ACTGG | 3 cut(s) | 1152, 1490, 1778 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1958 |
| BseBI | CCWGG | 4 cut(s) | 272, 412, 1650, 1968 |
| BseDI | CCNNGG | 6 cut(s) | 583, 858, 1198, 1292, 1692, 1967 |
| BseGI | GGATG | 5 cut(s) | 1270, 1315, 1594, 1821, 2005 |
| BseJI | GATNNNNATC | 1 cut(s) | 1958 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 670, 920, 997, 1203, 1204, 1799 |
| BseMII | CTCAG | 4 cut(s) | 213, 960, 984, 1467 |
| BseNI | ACTGG | 3 cut(s) | 1152, 1490, 1778 |
| BseRI | GAGGAG | 1 cut(s) | 995 |
| BseYI | CCCAGC | 1 cut(s) | 2047 |
| BsgI | GTGCAG | 3 cut(s) | 852, 1571, 1791 |
| Bsh1236I | CGCG | 1 cut(s) | 926 |
| BshFI | GGCC | 7 cut(s) | 171, 290, 663, 743, 1287, 1463, 1835 |
| BshNI | GGYRCC | 2 cut(s) | 1186, 1645 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1199 |
| BsiSI | CCGG | 1 cut(s) | 1169 |
| BslFI | GGGAC | 2 cut(s) | 1343, 1674 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 670, 920, 997, 1203, 1204, 1799 |
| BsmAI | GTCTC | 2 cut(s) | 647, 1614 |
| BsmFI | GGGAC | 2 cut(s) | 1343, 1674 |
| BsnI | GGCC | 7 cut(s) | 171, 290, 663, 743, 1287, 1463, 1835 |
| BsoBI | CYCGRG | 1 cut(s) | 1199 |
| Bsp119I | TTCGAA | 2 cut(s) | 1936, 1957 |
| Bsp1286I | GDGCHC | 1 cut(s) | 187 |
| Bsp143I | GATC | 2 cut(s) | 552, 1581 |
| BspACI | CCGC | 5 cut(s) | 926, 977, 1018, 1051, 1813 |
| BspANI | GGCC | 7 cut(s) | 171, 290, 663, 743, 1287, 1463, 1835 |
| BspCNI | CTCAG | 4 cut(s) | 214, 961, 985, 1468 |
| BspFNI | CGCG | 1 cut(s) | 926 |
| BspHI | TCATGA | 1 cut(s) | 1180 |
| BspLI | GGNNCC | 5 cut(s) | 186, 1188, 1377, 1647, 1909 |
| BspMAI | CTGCAG | 3 cut(s) | 436, 879, 1519 |
| BspOI | GCTAGC | 1 cut(s) | 1659 |
| BspPI | GGATC | 1 cut(s) | 547 |
| BspT104I | TTCGAA | 2 cut(s) | 1936, 1957 |
| BspT107I | GGYRCC | 2 cut(s) | 1186, 1645 |
| BsrFI | RCCGGY | 1 cut(s) | 1168 |
| BsrI | ACTGG | 3 cut(s) | 1152, 1490, 1778 |
| BssAI | RCCGGY | 1 cut(s) | 1168 |
| BssECI | CCNNGG | 6 cut(s) | 583, 858, 1198, 1292, 1692, 1967 |
| BssMI | GATC | 2 cut(s) | 552, 1581 |
| BssSI | CACGAG | 1 cut(s) | 792 |
| BssT1I | CCWWGG | 4 cut(s) | 583, 858, 1292, 1692 |
| Bst2BI | CACGAG | 1 cut(s) | 792 |
| Bst2UI | CCWGG | 4 cut(s) | 272, 412, 1650, 1968 |
| Bst4CI | ACNGT | 3 cut(s) | 598, 730, 1852 |
| Bst6I | CTCTTC | 3 cut(s) | 416, 1035, 1569 |
| BstBAI | YACGTR | 1 cut(s) | 191 |
| BstBI | TTCGAA | 2 cut(s) | 1936, 1957 |
| BstC8I | GCNNGC | 5 cut(s) | 173, 676, 928, 1657, 1661 |
| BstDEI | CTNAG | 5 cut(s) | 222, 969, 993, 1476, 1794 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 918 |
| BstF5I | GGATG | 5 cut(s) | 1270, 1315, 1594, 1821, 2005 |
| BstFNI | CGCG | 1 cut(s) | 926 |
| BstHHI | GCGC | 3 cut(s) | 926, 1056, 1174 |
| BstKTI | GATC | 2 cut(s) | 555, 1584 |
| BstMAI | GTCTC | 2 cut(s) | 647, 1614 |
| BstMBI | GATC | 2 cut(s) | 552, 1581 |
| BstNI | CCWGG | 4 cut(s) | 272, 412, 1650, 1968 |
| BstNSI | RCATGY | 3 cut(s) | 407, 1561, 1891 |
| BstSCI | CCNGG | 4 cut(s) | 270, 410, 1648, 1966 |
| BstSFI | CTRYAG | 3 cut(s) | 432, 875, 1515 |
| BstUI | CGCG | 1 cut(s) | 926 |
| BstV2I | GAAGAC | 3 cut(s) | 1731, 1890, 1985 |
| BstX2I | RGATCY | 1 cut(s) | 552 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1147, 1974 |
| BstYI | RGATCY | 1 cut(s) | 552 |
| BsuRI | GGCC | 7 cut(s) | 171, 290, 663, 743, 1287, 1463, 1835 |
| BtsCI | GGATG | 5 cut(s) | 1270, 1315, 1594, 1821, 2005 |
| BtsI | GCAGTG | 1 cut(s) | 1447 |
| BtsIMutI | CAGTG | 3 cut(s) | 691, 1447, 1497 |
| Cac8I | GCNNGC | 5 cut(s) | 173, 676, 928, 1657, 1661 |
| CaiI | CAGNNNCTG | 1 cut(s) | 221 |
| CciI | TCATGA | 1 cut(s) | 1180 |
| CfoI | GCGC | 3 cut(s) | 926, 1056, 1174 |
| Cfr10I | RCCGGY | 1 cut(s) | 1168 |
| Cfr13I | GGNCC | 3 cut(s) | 1217, 1461, 1833 |
| Csp6I | GTAC | 4 cut(s) | 426, 864, 1858, 2008 |
| CviAII | CATG | 7 cut(s) | 67, 257, 404, 495, 1181, 1558, 1888 |
| CviQI | GTAC | 4 cut(s) | 426, 864, 1858, 2008 |
| DdeI | CTNAG | 5 cut(s) | 222, 969, 993, 1476, 1794 |
| DpnI | GATC | 2 cut(s) | 554, 1583 |
| DpnII | GATC | 2 cut(s) | 552, 1581 |
| DraI | TTTAAA | 3 cut(s) | 898, 919, 1468 |
| DraIII | CACNNNGTG | 1 cut(s) | 194 |
| EaeI | YGGCCR | 2 cut(s) | 741, 1285 |
| Eam1104I | CTCTTC | 3 cut(s) | 416, 1035, 1569 |
| EarI | CTCTTC | 3 cut(s) | 416, 1035, 1569 |
| EciI | GGCGGA | 1 cut(s) | 1828 |
| Eco130I | CCWWGG | 4 cut(s) | 583, 858, 1292, 1692 |
| Eco24I | GRGCYC | 1 cut(s) | 187 |
| Eco32I | GATATC | 1 cut(s) | 1946 |
| Eco47I | GGWCC | 1 cut(s) | 1217 |
| Eco57I | CTGAAG | 3 cut(s) | 249, 332, 678 |
| Eco72I | CACGTG | 1 cut(s) | 191 |
| Eco88I | CYCGRG | 1 cut(s) | 1199 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 918 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1461 |
| EcoRI | GAATTC | 1 cut(s) | 617 |
| EcoRII | CCWGG | 4 cut(s) | 270, 410, 1648, 1966 |
| EcoRV | GATATC | 1 cut(s) | 1946 |
| EcoT14I | CCWWGG | 4 cut(s) | 583, 858, 1292, 1692 |
| EcoT38I | GRGCYC | 1 cut(s) | 187 |
| ErhI | CCWWGG | 4 cut(s) | 583, 858, 1292, 1692 |
| FaeI | CATG | 7 cut(s) | 70, 260, 407, 498, 1184, 1561, 1891 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1875, 1907, 1988, 2020 |
| FaqI | GGGAC | 2 cut(s) | 1343, 1674 |
| FatI | CATG | 7 cut(s) | 66, 256, 403, 494, 1180, 1557, 1887 |
| FauI | CCCGC | 2 cut(s) | 919, 1011 |
| FokI | GGATG | 5 cut(s) | 1277, 1322, 1601, 1828, 2012 |
| FriOI | GRGCYC | 1 cut(s) | 187 |
| FspBI | CTAG | 6 cut(s) | 591, 758, 945, 1437, 1656, 1901 |
| GlaI | GCGC | 3 cut(s) | 925, 1055, 1173 |
| GsaI | CCCAGC | 1 cut(s) | 2051 |
| GsuI | CTGGAG | 2 cut(s) | 433, 1671 |
| HaeIII | GGCC | 7 cut(s) | 171, 290, 663, 743, 1287, 1463, 1835 |
| HapII | CCGG | 1 cut(s) | 1169 |
| HhaI | GCGC | 3 cut(s) | 926, 1056, 1174 |
| Hin1II | CATG | 7 cut(s) | 70, 260, 407, 498, 1184, 1561, 1891 |
| Hin6I | GCGC | 3 cut(s) | 924, 1054, 1172 |
| HinP1I | GCGC | 3 cut(s) | 924, 1054, 1172 |
| HincII | GTYRAC | 1 cut(s) | 1003 |
| HindII | GTYRAC | 1 cut(s) | 1003 |
| HindIII | AAGCTT | 1 cut(s) | 900 |
| HinfI | GANTC | 9 cut(s) | 29, 218, 986, 1472, 1537, 1687, 1762, 1954, 1959 |
| HpaI | GTTAAC | 1 cut(s) | 1003 |
| HpaII | CCGG | 1 cut(s) | 1169 |
| HphI | GGTGA | 6 cut(s) | 17, 116, 206, 1507, 1546, 1940 |
| Hpy166II | GTNNAC | 6 cut(s) | 48, 355, 1003, 1220, 1445, 1920 |
| Hpy188I | TCNGA | 9 cut(s) | 22, 78, 217, 223, 634, 1402, 1477, 1588, 1635 |
| Hpy188III | TCNNGA | 7 cut(s) | 707, 792, 808, 1181, 1210, 1426, 1751 |
| Hpy8I | GTNNAC | 6 cut(s) | 48, 355, 1003, 1220, 1445, 1920 |
| HpyAV | CCTTC | 9 cut(s) | 158, 653, 661, 708, 798, 991, 1792, 1898, 1943 |
| HpyCH4III | ACNGT | 3 cut(s) | 598, 730, 1852 |
| HpyCH4IV | ACGT | 1 cut(s) | 190 |
| HpyF3I | CTNAG | 5 cut(s) | 222, 969, 993, 1476, 1794 |
| HpySE526I | ACGT | 1 cut(s) | 190 |
| Hsp92II | CATG | 7 cut(s) | 70, 260, 407, 498, 1184, 1561, 1891 |
| HspAI | GCGC | 3 cut(s) | 924, 1054, 1172 |
| KspAI | GTTAAC | 1 cut(s) | 1003 |
| Kzo9I | GATC | 2 cut(s) | 552, 1581 |
| LmnI | GCTCC | 5 cut(s) | 190, 965, 1119, 1381, 1652 |
| LweI | GCATC | 1 cut(s) | 1255 |
| MaeI | CTAG | 6 cut(s) | 591, 758, 945, 1437, 1656, 1901 |
| MaeII | ACGT | 1 cut(s) | 190 |
| MaeIII | GTNAC | 6 cut(s) | 10, 720, 748, 1068, 1164, 1312 |
| MalI | GATC | 2 cut(s) | 554, 1583 |
| MboI | GATC | 2 cut(s) | 552, 1581 |
| MflI | RGATCY | 1 cut(s) | 552 |
| MhlI | GDGCHC | 1 cut(s) | 187 |
| MlyI | GAGTC | 2 cut(s) | 1696, 1771 |
| MmeI | TCCRAC | 1 cut(s) | 759 |
| MslI | CAYNNNNRTG | 1 cut(s) | 2056 |
| MspA1I | CMGCKG | 2 cut(s) | 1018, 1051 |
| MspI | CCGG | 1 cut(s) | 1169 |
| MspR9I | CCNGG | 4 cut(s) | 272, 412, 1650, 1968 |
| MvaI | CCWGG | 4 cut(s) | 272, 412, 1650, 1968 |
| MvnI | CGCG | 1 cut(s) | 926 |
| NdeII | GATC | 2 cut(s) | 552, 1581 |
| NheI | GCTAGC | 1 cut(s) | 1655 |
| NlaIII | CATG | 7 cut(s) | 70, 260, 407, 498, 1184, 1561, 1891 |
| NlaIV | GGNNCC | 5 cut(s) | 186, 1188, 1377, 1647, 1909 |
| NmuCI | GTSAC | 2 cut(s) | 748, 1068 |
| NspI | RCATGY | 3 cut(s) | 407, 1561, 1891 |
| NspV | TTCGAA | 2 cut(s) | 1936, 1957 |
| PagI | TCATGA | 1 cut(s) | 1180 |
| PciI | ACATGT | 1 cut(s) | 1557 |
| PfeI | GAWTC | 7 cut(s) | 29, 218, 986, 1472, 1537, 1954, 1959 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 670 |
| PleI | GAGTC | 2 cut(s) | 1695, 1770 |
| PmaCI | CACGTG | 1 cut(s) | 191 |
| PmlI | CACGTG | 1 cut(s) | 191 |
| PpsI | GAGTC | 2 cut(s) | 1695, 1770 |
| Ppu21I | YACGTR | 1 cut(s) | 191 |
| PscI | ACATGT | 1 cut(s) | 1557 |
| PshBI | ATTAAT | 1 cut(s) | 1083 |
| PsiI | TTATAA | 2 cut(s) | 1230, 1320 |
| Psp6I | CCWGG | 4 cut(s) | 270, 410, 1648, 1966 |
| PspCI | CACGTG | 1 cut(s) | 191 |
| PspFI | CCCAGC | 1 cut(s) | 2047 |
| PspGI | CCWGG | 4 cut(s) | 270, 410, 1648, 1966 |
| PspN4I | GGNNCC | 5 cut(s) | 186, 1188, 1377, 1647, 1909 |
| PspPI | GGNCC | 3 cut(s) | 1217, 1461, 1833 |
| PstI | CTGCAG | 3 cut(s) | 436, 879, 1519 |
| PstNI | CAGNNNCTG | 1 cut(s) | 221 |
| PsuI | RGATCY | 1 cut(s) | 552 |
| RsaI | GTAC | 4 cut(s) | 427, 865, 1859, 2009 |
| RsaNI | GTAC | 4 cut(s) | 426, 864, 1858, 2008 |
| RseI | CAYNNNNRTG | 1 cut(s) | 2056 |
| Sau3AI | GATC | 2 cut(s) | 552, 1581 |
| Sau96I | GGNCC | 3 cut(s) | 1217, 1461, 1833 |
| ScaI | AGTACT | 1 cut(s) | 427 |
| SchI | GAGTC | 2 cut(s) | 1696, 1771 |
| ScrFI | CCNGG | 4 cut(s) | 272, 412, 1650, 1968 |
| SduI | GDGCHC | 1 cut(s) | 187 |
| SfaNI | GCATC | 1 cut(s) | 1255 |
| SfcI | CTRYAG | 3 cut(s) | 432, 875, 1515 |
| SfuI | TTCGAA | 2 cut(s) | 1936, 1957 |
| SinI | GGWCC | 1 cut(s) | 1217 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 2056 |
| SmlI | CTYRAG | 1 cut(s) | 1448 |
| SmoI | CTYRAG | 1 cut(s) | 1448 |
| SsiI | CCGC | 5 cut(s) | 926, 977, 1018, 1051, 1813 |
| SspI | AATATT | 1 cut(s) | 1060 |
| SspMI | CTAG | 6 cut(s) | 591, 758, 945, 1437, 1656, 1901 |
| StyD4I | CCNGG | 4 cut(s) | 270, 410, 1648, 1966 |
| StyI | CCWWGG | 4 cut(s) | 583, 858, 1292, 1692 |
| TaaI | ACNGT | 3 cut(s) | 598, 730, 1852 |
| TaiI | ACGT | 1 cut(s) | 193 |
| TaqI | TCGA | 4 cut(s) | 463, 1750, 1936, 1957 |
| TatI | WGTACW | 2 cut(s) | 425, 1857 |
| TauI | GCSGC | 1 cut(s) | 1054 |
| TfiI | GAWTC | 7 cut(s) | 29, 218, 986, 1472, 1537, 1954, 1959 |
| TscAI | CASTG | 3 cut(s) | 691, 1447, 1497 |
| TseFI | GTSAC | 2 cut(s) | 748, 1068 |
| Tsp45I | GTSAC | 2 cut(s) | 748, 1068 |
| TspDTI | ATGAA | 6 cut(s) | 83, 521, 657, 722, 1251, 1735 |
| TspRI | CASTG | 3 cut(s) | 691, 1447, 1497 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 670 |
| VpaK11BI | GGWCC | 1 cut(s) | 1217 |
| VspI | ATTAAT | 1 cut(s) | 1083 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 918 |
| XapI | RAATTY | 5 cut(s) | 87, 237, 294, 617, 1129 |
| XceI | RCATGY | 3 cut(s) | 407, 1561, 1891 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1147 |
| XspI | CTAG | 6 cut(s) | 591, 758, 945, 1437, 1656, 1901 |
| ZrmI | AGTACT | 1 cut(s) | 427 |