Rw1G022350

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000291
Physical Location & Seq
Reverse (-)
47246049 .. 47247368
1320 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G022350.1

Sequence Viewer

Length: 1113 bp
ATGAGGGAGTGTCACGACACCCTGTGGGCAGGTCACCCTGGATGGCAGAGGACTCACGCACTCTTCAAGCAGGGTTACTATTGGCCCCAGATGCGAGACAATGTGACGGAATACACCAAGACTTGCTTAACATGCCAGCAAGACAAGATTGAGCGCCGAAAGACTCCAGGGCTGTTGGAACCACTGTCTATTCCGACTCGCCCGTGGGAAAGTGTCTCCCTTGACTTTATTACTAACCTCCCAAAGGTGGGAGACTTATCAGGCATCCTGGTGGTGGTCGACAGGTTTTCGAAGTATGCTACCTTTGTGCCAACCCCAAAGTATTGTTCGGCGGAAGACACAGCAAGCCTCTTCTTCAAGCATGTGGTAAAGTATTGGGGTGTGCCACAGAACATTGTCAGCGATTGCGACACTAGGTTCACGGGAACATTCTGGACCGAGCTATTCAACTCATCCACCAACAAGAGTGCTTTTGAAATTGTCACTGGCCAACAGCCTCTCTTGCCTTATACTGTGCAAGAAGTCTACAAAGGGGCGAATCCGCGTGCTTTCAACTTCACAAAAGAGTGGAAGACCAATACCAAGATCGCTCAAGCCTACCTAGAGAAAGCGGCGGGGCGAATGAAGAAGTGGGCAGATCAAGGCCGAAAGCCCAGGGAGTTTCAGGCAGGGGACATGGTCCTTGTCAAGCTGCTCCCTGAACAACTCAGGTTCCTACGCTCCAGAGACAAGCGACTATTCCGGAAGTATGAAGGACCGCTCCCCATCATTTCTAAAGTGGGGAAATGCTCCTACAAAGTTGATATTCCCGCCTGGATGAGAGTTCACCCCGTCTTCCACGTCAGCAACCTCAAGCCACACCAGCCAGACCGTGAAGATCAAGCACGCAACAAGCCTAAGAAAGAAGTGGAGGAGATCCTAGCAGAGAGAGTGATCCGAGTGTCAAGGCGCCCATGCCAGCAGTTCCTGGTCAAGTGGAAGGGTCTTGGACATGAAGAAACCAGTTGGGAGAATGCTGAAGTCCTGAAGACGAAGTTCCAGCAGAAGATTGAAGACTTCAAGACCACGATTGTCGTCGAGAGCGCCGACAGCTTAAGTGGGGGAGGATGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease_2 Chromo RVP_2 RVT_1 Retrotrans_gag gag-asp_proteas rve

Protein Analysis

370

Amino Acids

42.84

Weight (kDa)

9.41

Isoelectric Point (pI)

31.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Integrase_H2C2 PF17921 1 - 49 1.5e-17 Integrase zinc binding domain
SH3_Tf2-1 PF24626 224 - 287 1.7e-15 Tf2-1-like, SH3 domain
Chromo PF00385 302 - 355 1.5e-12 Chromo (CHRromatin Organisation MOdifier) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000291)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00860
fragaria_vesca FvH4_1g23712 FvH4_1g29809 FvH4_1g29810 FvH4_2g02661 FvH4_2g13451 FvH4_2g17921 FvH4_2g17922 FvH4_2g19251 FvH4_2g19252 FvH4_2g28221 FvH4_2g35961 FvH4_3g10372 FvH4_3g12461 FvH4_3g12461 FvH4_3g27861 FvH4_3g34591 FvH4_3g40201 FvH4_3g44612 FvH4_4g08352 FvH4_4g12251 FvH4_4g12742 FvH4_4g13904 FvH4_4g14287 FvH4_4g15243 FvH4_4g24071 FvH4_4g33448 FvH4_5g21912 FvH4_5g39371 FvH4_6g14992 FvH4_6g15221 FvH4_6g20603 FvH4_6g31093 FvH4_6g32372 FvH4_6g33012
malus_domestica MD11G1009100.v1.1 MD13G1145000.v1.1 MD16G1138700.v1.1
prunus_persica Prupe.5G246300_v2.0.a1 Prupe.7G034800_v2.0.a1 Prupe.8G084500_v2.0.a1
pyrus_communis pycom01g18240 pycom04g00330 pycom05g09010 pycom06g01670 pycom06g01690 pycom06g07180 pycom06g11620 pycom10g05720 pycom1134g00040 pycom1134g00060 pycom12486g00010 pycom12555g00230 pycom13g21670 pycom13g23130 pycom13g23140 pycom14g10580
rosa_chinensis RchiOBHm_Chr1g0330691 RchiOBHm_Chr2g0106171 RchiOBHm_Chr2g0134731 RchiOBHm_Chr2g0142791 RchiOBHm_Chr2g0149861 RchiOBHm_Chr3g0452401 RchiOBHm_Chr3g0461881 RchiOBHm_Chr4g0401341 RchiOBHm_Chr5g0075641 RchiOBHm_Chr6g0265961 RchiOBHm_Chr7g0200201 RchiOBHm_Chr7g0237811
rosa_laevigata RLG00000002773
rosa_multiflora Rmu_co8037806.1_g000001 Rmu_co8445989.1_g000001 Rmu_sc0000745.1_g000039 Rmu_sc0004448.1_g000029 Rmu_sc0004488.1_g000002 Rmu_sc0004591.1_g000018 Rmu_sc0005065.1_g000030 Rmu_sc0005150.1_g000005 Rmu_sc0005654.1_g000011 Rmu_sc0006986.1_g000016
rosa_roxburghii Rroxscaffold_164G00436490 Rroxscaffold_175G00432490 Rroxscaffold_1G00059440 Rroxscaffold_1G00064410 Rroxscaffold_2G00100310 Rroxscaffold_2G00128170 Rroxscaffold_3G00239420 Rroxscaffold_3G00264970 Rroxscaffold_3G00271550 Rroxscaffold_4G00300240 Rroxscaffold_5G00385050 Rroxscaffold_6G00399720
rosa_rugosa Rorug02G0252200
rosa_samantha Rh2DG251900 Rh7CG329900
rosa_wichuraiana Rw0G004800 Rw1G000850 Rw1G022350 Rw2G027030 Rw2G027760 Rw2G028410 Rw2G029130 Rw2G029390 Rw2G032490 Rw2G039460 Rw2G047800 Rw2G050340 Rw3G026430 Rw4G018370 Rw4G030750 Rw4G033140 Rw5G011950 Rw5G012010 Rw5G029280 Rw5G040190 Rw5G044570 Rw5G048240 Rw6G000340 Rw6G010140 Rw6G026480 Rw7G033750 Rw7G037250 Rw7G042080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 20
AccB1I GGYRCC 1 cut(s) 948
AccBSI CCGCTC 1 cut(s) 760
AccI GTMKAC 2 cut(s) 279, 525
AccII CGCG 1 cut(s) 544
AccIII TCCGGA 1 cut(s) 741
AciI CCGC 6 cut(s) 332, 542, 611, 614, 758, 810
AclWI GGATC 2 cut(s) 910, 928
AcoI YGGCCR 1 cut(s) 487
AcuI CTGAAG 2 cut(s) 1038, 1046
AcyI GRCGYC 1 cut(s) 949
AdeI CACNNNGTG 1 cut(s) 24
AfiI CCNNNNNNNGG 4 cut(s) 244, 247, 248, 274
AflII CTTAAG 1 cut(s) 1093
AgsI TTSAA 7 cut(s) 67, 358, 448, 476, 553, 1052, 1060
AjiI CACGTC 1 cut(s) 841
AjnI CCWGG 6 cut(s) 37, 166, 267, 653, 812, 966
AjuI GAANNNNNNNTTGG 2 cut(s) 310, 342
AluBI AGCT 3 cut(s) 442, 691, 1092
AluI AGCT 3 cut(s) 442, 691, 1092
Alw26I GTCTC 4 cut(s) 90, 220, 246, 720
AlwI GGATC 2 cut(s) 910, 928
AlwNI CAGNNNCTG 1 cut(s) 967
Aor13HI TCCGGA 1 cut(s) 741
AoxI GGCC 3 cut(s) 83, 487, 643
ApeKI GCWGC 1 cut(s) 691
AspLEI GCGC 3 cut(s) 156, 951, 1085
AspS9I GGNCC 4 cut(s) 84, 435, 679, 755
AsuHPI GGTGA 2 cut(s) 26, 818
AsuII TTCGAA 1 cut(s) 290
AvaII GGWCC 3 cut(s) 435, 679, 755
BalI TGGCCA 1 cut(s) 489
BanI GGYRCC 1 cut(s) 948
BbsI GAAGAC 5 cut(s) 342, 578, 826, 1034, 1059
BbvI GCAGC 1 cut(s) 678
BccI CCATC 2 cut(s) 36, 773
BciT130I CCWGG 6 cut(s) 39, 168, 269, 655, 814, 968
BcoDI GTCTC 4 cut(s) 90, 220, 246, 720
BfaI CTAG 3 cut(s) 414, 602, 920
BfoI RGCGCY 3 cut(s) 157, 952, 1086
BfrI CTTAAG 1 cut(s) 1093
BfuAI ACCTGC 1 cut(s) 20
BisI GCNGC 2 cut(s) 612, 692
BlsI GCNGC 2 cut(s) 613, 693
Bme1390I CCNGG 6 cut(s) 39, 168, 269, 655, 814, 968
Bme18I GGWCC 3 cut(s) 435, 679, 755
BmgBI CACGTC 1 cut(s) 841
BmgT120I GGNCC 4 cut(s) 84, 435, 679, 755
BmiI GGNNCC 4 cut(s) 86, 180, 713, 950
BmrFI CCNGG 6 cut(s) 39, 168, 269, 655, 814, 968
BmsI GCATC 2 cut(s) 81, 273
BpiI GAAGAC 5 cut(s) 342, 578, 826, 1034, 1059
BpmI CTGGAG 2 cut(s) 150, 706
Bpu14I TTCGAA 1 cut(s) 290
BpuEI CTTGAG 2 cut(s) 576, 836
BsaHI GRCGYC 1 cut(s) 949
BsaJI CCNNGG 5 cut(s) 37, 167, 203, 653, 654
BsaWI WCCGGW 1 cut(s) 741
Bsc4I CCNNNNNNNGG 4 cut(s) 244, 247, 248, 274
Bse1I ACTGG 2 cut(s) 490, 1002
BseAI TCCGGA 1 cut(s) 741
BseBI CCWGG 6 cut(s) 39, 168, 269, 655, 814, 968
BseDI CCNNGG 5 cut(s) 37, 167, 203, 653, 654
BseGI GGATG 5 cut(s) 47, 264, 452, 822, 1112
BseLI CCNNNNNNNGG 4 cut(s) 244, 247, 248, 274
BseMII CTCAG 1 cut(s) 721
BseNI ACTGG 2 cut(s) 490, 1002
BseRI GAGGAG 1 cut(s) 926
BseXI GCAGC 1 cut(s) 678
Bsh1236I CGCG 1 cut(s) 544
BshFI GGCC 3 cut(s) 85, 489, 645
BshNI GGYRCC 1 cut(s) 948
BsiSI CCGG 1 cut(s) 742
BslFI GGGAC 1 cut(s) 686
BslI CCNNNNNNNGG 4 cut(s) 244, 247, 248, 274
BsmAI GTCTC 4 cut(s) 90, 220, 246, 720
BsmFI GGGAC 1 cut(s) 686
BsmI GAATGC 1 cut(s) 1018
BsnI GGCC 3 cut(s) 85, 489, 645
Bsp119I TTCGAA 1 cut(s) 290
Bsp13I TCCGGA 1 cut(s) 741
Bsp143I GATC 5 cut(s) 585, 637, 877, 915, 933
BspACI CCGC 6 cut(s) 332, 542, 611, 614, 758, 810
BspANI GGCC 3 cut(s) 85, 489, 645
BspCNI CTCAG 1 cut(s) 720
BspEI TCCGGA 1 cut(s) 741
BspFNI CGCG 1 cut(s) 544
BspLI GGNNCC 4 cut(s) 86, 180, 713, 950
BspMI ACCTGC 1 cut(s) 20
BspPI GGATC 2 cut(s) 910, 928
BspT104I TTCGAA 1 cut(s) 290
BspT107I GGYRCC 1 cut(s) 948
BspTI CTTAAG 1 cut(s) 1093
BsrBI CCGCTC 1 cut(s) 760
BsrI ACTGG 2 cut(s) 490, 1002
BssECI CCNNGG 5 cut(s) 37, 167, 203, 653, 654
BssMI GATC 5 cut(s) 585, 637, 877, 915, 933
BssNI GRCGYC 1 cut(s) 949
Bst2UI CCWGG 6 cut(s) 39, 168, 269, 655, 814, 968
Bst4CI ACNGT 3 cut(s) 186, 514, 872
Bst6I CTCTTC 2 cut(s) 68, 356
BstACI GRCGYC 1 cut(s) 949
BstAFI CTTAAG 1 cut(s) 1093
BstBI TTCGAA 1 cut(s) 290
BstC8I GCNNGC 5 cut(s) 137, 346, 546, 886, 959
BstDEI CTNAG 2 cut(s) 707, 897
BstDSI CCRYGG 1 cut(s) 203
BstEII GGTNACC 1 cut(s) 32
BstENI CCTNNNNNAGG 1 cut(s) 242
BstF5I GGATG 5 cut(s) 47, 264, 452, 822, 1112
BstFNI CGCG 1 cut(s) 544
BstH2I RGCGCY 3 cut(s) 157, 952, 1086
BstHHI GCGC 3 cut(s) 156, 951, 1085
BstKTI GATC 5 cut(s) 588, 640, 880, 918, 936
BstMAI GTCTC 4 cut(s) 90, 220, 246, 720
BstMBI GATC 5 cut(s) 585, 637, 877, 915, 933
BstMWI GCNNNNNNNGC 5 cut(s) 91, 132, 502, 862, 1089
BstNI CCWGG 6 cut(s) 39, 168, 269, 655, 814, 968
BstNSI RCATGY 2 cut(s) 135, 365
BstPI GGTNACC 1 cut(s) 32
BstSCI CCNGG 6 cut(s) 37, 166, 267, 653, 812, 966
BstUI CGCG 1 cut(s) 544
BstV1I GCAGC 1 cut(s) 678
BstV2I GAAGAC 5 cut(s) 342, 578, 826, 1034, 1059
BstX2I RGATCY 1 cut(s) 915
BstYI RGATCY 1 cut(s) 915
BsuRI GGCC 3 cut(s) 85, 489, 645
BtgI CCRYGG 1 cut(s) 203
BtrI CACGTC 1 cut(s) 841
BtsCI GGATG 5 cut(s) 47, 264, 452, 822, 1112
BtsIMutI CAGTG 2 cut(s) 182, 483
BveI ACCTGC 1 cut(s) 20
Cac8I GCNNGC 5 cut(s) 137, 346, 546, 886, 959
CaiI CAGNNNCTG 1 cut(s) 967
CfoI GCGC 3 cut(s) 156, 951, 1085
Cfr13I GGNCC 4 cut(s) 84, 435, 679, 755
CviAII CATG 5 cut(s) 132, 362, 676, 954, 992
DdeI CTNAG 2 cut(s) 707, 897
DinI GGCGCC 1 cut(s) 950
DpnI GATC 5 cut(s) 587, 639, 879, 917, 935
DpnII GATC 5 cut(s) 585, 637, 877, 915, 933
DraIII CACNNNGTG 1 cut(s) 24
EaeI YGGCCR 1 cut(s) 487
Eam1104I CTCTTC 2 cut(s) 68, 356
EarI CTCTTC 2 cut(s) 68, 356
EciI GGCGGA 1 cut(s) 347
Eco47I GGWCC 3 cut(s) 435, 679, 755
Eco57I CTGAAG 2 cut(s) 1038, 1046
Eco91I GGTNACC 1 cut(s) 32
EcoNI CCTNNNNNAGG 1 cut(s) 242
EcoO65I GGTNACC 1 cut(s) 32
EcoRII CCWGG 6 cut(s) 37, 166, 267, 653, 812, 966
EgeI GGCGCC 1 cut(s) 950
EheI GGCGCC 1 cut(s) 950
FaeI CATG 5 cut(s) 135, 365, 679, 957, 995
FaiI YATR 8 cut(s) 133, 297, 363, 510, 677, 750, 955, 993
FalI AAGNNNNNCTT 2 cut(s) 110, 142
FaqI GGGAC 1 cut(s) 686
FatI CATG 5 cut(s) 131, 361, 675, 953, 991
FauI CCCGC 2 cut(s) 607, 817
FblI GTMKAC 2 cut(s) 279, 525
Fnu4HI GCNGC 2 cut(s) 612, 692
FokI GGATG 4 cut(s) 54, 251, 439, 829
Fsp4HI GCNGC 2 cut(s) 612, 692
FspBI CTAG 3 cut(s) 414, 602, 920
GlaI GCGC 3 cut(s) 155, 950, 1084
GluI GCNGC 2 cut(s) 612, 692
GsuI CTGGAG 2 cut(s) 150, 706
HaeII RGCGCY 3 cut(s) 157, 952, 1086
HaeIII GGCC 3 cut(s) 85, 489, 645
HapII CCGG 1 cut(s) 742
HhaI GCGC 3 cut(s) 156, 951, 1085
Hin1I GRCGYC 1 cut(s) 949
Hin1II CATG 5 cut(s) 135, 365, 679, 957, 995
Hin6I GCGC 3 cut(s) 154, 949, 1083
HinP1I GCGC 3 cut(s) 154, 949, 1083
HincII GTYRAC 1 cut(s) 280
HindII GTYRAC 1 cut(s) 280
HinfI GANTC 4 cut(s) 52, 163, 196, 538
HpaII CCGG 1 cut(s) 742
HphI GGTGA 2 cut(s) 26, 818
Hpy166II GTNNAC 4 cut(s) 280, 420, 526, 826
Hpy188I TCNGA 2 cut(s) 195, 938
Hpy188III TCNNGA 7 cut(s) 14, 433, 723, 742, 1024, 1060, 1078
Hpy8I GTNNAC 4 cut(s) 280, 420, 526, 826
Hpy99I CGWCG 1 cut(s) 1079
HpyAV CCTTC 2 cut(s) 746, 973
HpyCH4III ACNGT 3 cut(s) 186, 514, 872
HpyCH4IV ACGT 1 cut(s) 840
HpyCH4V TGCA 1 cut(s) 517
HpyF10VI GCNNNNNNNGC 5 cut(s) 91, 132, 502, 862, 1089
HpyF3I CTNAG 2 cut(s) 707, 897
HpySE526I ACGT 1 cut(s) 840
Hsp92I GRCGYC 1 cut(s) 949
Hsp92II CATG 5 cut(s) 135, 365, 679, 957, 995
HspAI GCGC 3 cut(s) 154, 949, 1083
KasI GGCGCC 1 cut(s) 948
Kpn2I TCCGGA 1 cut(s) 741
Kzo9I GATC 5 cut(s) 585, 637, 877, 915, 933
LmnI GCTCC 4 cut(s) 699, 725, 765, 794
Lsp1109I GCAGC 1 cut(s) 678
LweI GCATC 2 cut(s) 81, 273
MaeI CTAG 3 cut(s) 414, 602, 920
MaeII ACGT 1 cut(s) 840
MaeIII GTNAC 5 cut(s) 11, 32, 74, 103, 481
MalI GATC 5 cut(s) 587, 639, 879, 917, 935
MbiI CCGCTC 1 cut(s) 760
MboI GATC 5 cut(s) 585, 637, 877, 915, 933
MflI RGATCY 1 cut(s) 915
MlsI TGGCCA 1 cut(s) 489
MluCI AATT 1 cut(s) 477
MluNI TGGCCA 1 cut(s) 489
Mly113I GGCGCC 1 cut(s) 949
MlyI GAGTC 3 cut(s) 46, 157, 190
MmeI TCCRAC 2 cut(s) 156, 218
MnlI CCTC 7 cut(s) 42, 248, 359, 507, 860, 904, 1097
Mox20I TGGCCA 1 cut(s) 489
MroI TCCGGA 1 cut(s) 741
MscI TGGCCA 1 cut(s) 489
MseI TTAA 2 cut(s) 128, 1094
MslI CAYNNNNRTG 1 cut(s) 269
Msp20I TGGCCA 1 cut(s) 489
MspCI CTTAAG 1 cut(s) 1093
MspI CCGG 1 cut(s) 742
MspR9I CCNGG 6 cut(s) 39, 168, 269, 655, 814, 968
Mva1269I GAATGC 1 cut(s) 1018
MvaI CCWGG 6 cut(s) 39, 168, 269, 655, 814, 968
MvnI CGCG 1 cut(s) 544
MwoI GCNNNNNNNGC 5 cut(s) 91, 132, 502, 862, 1089
NarI GGCGCC 1 cut(s) 949
NdeII GATC 5 cut(s) 585, 637, 877, 915, 933
NlaIII CATG 5 cut(s) 135, 365, 679, 957, 995
NlaIV GGNNCC 4 cut(s) 86, 180, 713, 950
NmuCI GTSAC 4 cut(s) 11, 32, 103, 481
NspI RCATGY 2 cut(s) 135, 365
NspV TTCGAA 1 cut(s) 290
PasI CCCWGGG 1 cut(s) 654
PcsI WCGNNNNNNNCGW 1 cut(s) 1083
PctI GAATGC 1 cut(s) 1018
PfeI GAWTC 1 cut(s) 538
PflFI GACNNNGTC 1 cut(s) 677
PkrI GCNGC 2 cut(s) 613, 693
PleI GAGTC 3 cut(s) 46, 157, 190
PluTI GGCGCC 1 cut(s) 952
PpsI GAGTC 3 cut(s) 46, 157, 190
Psp6I CCWGG 6 cut(s) 37, 166, 267, 653, 812, 966
PspEI GGTNACC 1 cut(s) 32
PspGI CCWGG 6 cut(s) 37, 166, 267, 653, 812, 966
PspN4I GGNNCC 4 cut(s) 86, 180, 713, 950
PspPI GGNCC 4 cut(s) 84, 435, 679, 755
PstNI CAGNNNCTG 1 cut(s) 967
PsuI RGATCY 1 cut(s) 915
PsyI GACNNNGTC 1 cut(s) 677
RseI CAYNNNNRTG 1 cut(s) 269
SalI GTCGAC 1 cut(s) 278
SaqAI TTAA 2 cut(s) 128, 1094
SatI GCNGC 2 cut(s) 612, 692
Sau3AI GATC 5 cut(s) 585, 637, 877, 915, 933
Sau96I GGNCC 4 cut(s) 84, 435, 679, 755
SchI GAGTC 3 cut(s) 46, 157, 190
ScrFI CCNGG 6 cut(s) 39, 168, 269, 655, 814, 968
SfaNI GCATC 2 cut(s) 81, 273
SfoI GGCGCC 1 cut(s) 950
SfuI TTCGAA 1 cut(s) 290
SinI GGWCC 3 cut(s) 435, 679, 755
SmiMI CAYNNNNRTG 1 cut(s) 269
SmlI CTYRAG 3 cut(s) 591, 851, 1093
SmoI CTYRAG 3 cut(s) 591, 851, 1093
Sse9I AATT 1 cut(s) 477
SsiI CCGC 6 cut(s) 332, 542, 611, 614, 758, 810
SspDI GGCGCC 1 cut(s) 948
SspMI CTAG 3 cut(s) 414, 602, 920
StyD4I CCNGG 6 cut(s) 37, 166, 267, 653, 812, 966
TaaI ACNGT 3 cut(s) 186, 514, 872
TaiI ACGT 1 cut(s) 843
TaqI TCGA 3 cut(s) 279, 290, 1077
TaqII GACCGA 1 cut(s) 452
TasI AATT 1 cut(s) 477
TauI GCSGC 1 cut(s) 614
TfiI GAWTC 1 cut(s) 538
Tru1I TTAA 2 cut(s) 128, 1094
Tru9I TTAA 2 cut(s) 128, 1094
TscAI CASTG 2 cut(s) 189, 490
TseFI GTSAC 4 cut(s) 11, 32, 103, 481
TseI GCWGC 1 cut(s) 691
Tsp45I GTSAC 4 cut(s) 11, 32, 103, 481
TspDTI ATGAA 3 cut(s) 638, 765, 1008
TspGWI ACGGA 1 cut(s) 122
TspRI CASTG 2 cut(s) 189, 490
Tth111I GACNNNGTC 1 cut(s) 677
Vha464I CTTAAG 1 cut(s) 1093
VpaK11BI GGWCC 3 cut(s) 435, 679, 755
XagI CCTNNNNNAGG 1 cut(s) 242
XceI RCATGY 2 cut(s) 135, 365
XmiI GTMKAC 2 cut(s) 279, 525
XspI CTAG 3 cut(s) 414, 602, 920
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.