Rmu_sc0005150.1_g000005
ERF Family

DNA RNA polymerases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005150.1
OG0000291
Physical Location & Seq
Forward (+)
16476 .. 16823
348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005150.1_g000005.1.cds

Sequence Viewer

Length: 348 bp
atggctcctgtttatcaatttgagagatctggtgtaaggaaaggggagagttttctaaccttgtctagcagtgaattcgagatggaggaagactttaaagaatctaaagttatttgtccagtggtgattaaagggttgttgactacagaaatggtagatatggtgatccctaaggaaatgcagaatatgttgggagagtttaaggagctgatttcaaatgtgctgcctaacgagttaccacctatgagggacattcagcatcatattgatctagtttctggagctagtttgccaaatctgccccattaccgcatgagtcctaaggagaatgagattttgagggagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 Retrotrans_gag rve zf-H2C2

Protein Analysis

115

Amino Acids

13.19

Weight (kDa)

4.97

Isoelectric Point (pI)

50.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000291)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00860
fragaria_vesca FvH4_1g23712 FvH4_1g29809 FvH4_1g29810 FvH4_2g02661 FvH4_2g13451 FvH4_2g17921 FvH4_2g17922 FvH4_2g19251 FvH4_2g19252 FvH4_2g28221 FvH4_2g35961 FvH4_3g10372 FvH4_3g12461 FvH4_3g12461 FvH4_3g27861 FvH4_3g34591 FvH4_3g40201 FvH4_3g44612 FvH4_4g08352 FvH4_4g12251 FvH4_4g12742 FvH4_4g13904 FvH4_4g14287 FvH4_4g15243 FvH4_4g24071 FvH4_4g33448 FvH4_5g21912 FvH4_5g39371 FvH4_6g14992 FvH4_6g15221 FvH4_6g20603 FvH4_6g31093 FvH4_6g32372 FvH4_6g33012
malus_domestica MD11G1009100.v1.1 MD13G1145000.v1.1 MD16G1138700.v1.1
prunus_persica Prupe.5G246300_v2.0.a1 Prupe.7G034800_v2.0.a1 Prupe.8G084500_v2.0.a1
pyrus_communis pycom01g18240 pycom04g00330 pycom05g09010 pycom06g01670 pycom06g01690 pycom06g07180 pycom06g11620 pycom10g05720 pycom1134g00040 pycom1134g00060 pycom12486g00010 pycom12555g00230 pycom13g21670 pycom13g23130 pycom13g23140 pycom14g10580
rosa_chinensis RchiOBHm_Chr1g0330691 RchiOBHm_Chr2g0106171 RchiOBHm_Chr2g0134731 RchiOBHm_Chr2g0142791 RchiOBHm_Chr2g0149861 RchiOBHm_Chr3g0452401 RchiOBHm_Chr3g0461881 RchiOBHm_Chr4g0401341 RchiOBHm_Chr5g0075641 RchiOBHm_Chr6g0265961 RchiOBHm_Chr7g0200201 RchiOBHm_Chr7g0237811
rosa_laevigata RLG00000002773
rosa_multiflora Rmu_co8037806.1_g000001 Rmu_co8445989.1_g000001 Rmu_sc0000745.1_g000039 Rmu_sc0004448.1_g000029 Rmu_sc0004488.1_g000002 Rmu_sc0004591.1_g000018 Rmu_sc0005065.1_g000030 Rmu_sc0005150.1_g000005 Rmu_sc0005654.1_g000011 Rmu_sc0006986.1_g000016
rosa_roxburghii Rroxscaffold_164G00436490 Rroxscaffold_175G00432490 Rroxscaffold_1G00059440 Rroxscaffold_1G00064410 Rroxscaffold_2G00100310 Rroxscaffold_2G00128170 Rroxscaffold_3G00239420 Rroxscaffold_3G00264970 Rroxscaffold_3G00271550 Rroxscaffold_4G00300240 Rroxscaffold_5G00385050 Rroxscaffold_6G00399720
rosa_rugosa Rorug02G0252200
rosa_samantha Rh2DG251900 Rh7CG329900
rosa_wichuraiana Rw0G004800 Rw1G000850 Rw1G022350 Rw2G027030 Rw2G027760 Rw2G028410 Rw2G029130 Rw2G029390 Rw2G032490 Rw2G039460 Rw2G047800 Rw2G050340 Rw3G026430 Rw4G018370 Rw4G030750 Rw4G033140 Rw5G011950 Rw5G012010 Rw5G029280 Rw5G040190 Rw5G044570 Rw5G048240 Rw6G000340 Rw6G010140 Rw6G026480 Rw7G033750 Rw7G037250 Rw7G042080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 310
AclWI GGATC 1 cut(s) 160
AcsI RAATTY 1 cut(s) 74
AgsI TTSAA 1 cut(s) 216
AluBI AGCT 2 cut(s) 208, 284
AluI AGCT 2 cut(s) 208, 284
AlwI GGATC 1 cut(s) 160
ApeKI GCWGC 1 cut(s) 223
ApoI RAATTY 1 cut(s) 74
AsuHPI GGTGA 2 cut(s) 136, 175
AxyI CCTNAGG 2 cut(s) 171, 321
BbsI GAAGAC 1 cut(s) 96
BbvI GCAGC 1 cut(s) 210
BccI CCATC 1 cut(s) 76
BcgI CGANNNNNNTGC 2 cut(s) 58, 92
BfaI CTAG 3 cut(s) 66, 272, 285
BfmI CTRYAG 1 cut(s) 144
BglII AGATCT 1 cut(s) 26
BisI GCNGC 1 cut(s) 224
BlsI GCNGC 1 cut(s) 225
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 1 cut(s) 268
BpiI GAAGAC 1 cut(s) 96
BpmI CTGGAG 1 cut(s) 300
Bse1I ACTGG 1 cut(s) 119
Bse21I CCTNAGG 2 cut(s) 171, 321
BseNI ACTGG 1 cut(s) 119
BseXI GCAGC 1 cut(s) 210
BslFI GGGAC 1 cut(s) 263
BsmFI GGGAC 1 cut(s) 263
Bsp143I GATC 3 cut(s) 26, 165, 268
BspACI CCGC 1 cut(s) 310
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 160
BsrI ACTGG 1 cut(s) 119
BssMI GATC 3 cut(s) 26, 165, 268
BstDEI CTNAG 2 cut(s) 171, 321
BstKTI GATC 3 cut(s) 29, 168, 271
BstMBI GATC 3 cut(s) 26, 165, 268
BstMWI GCNNNNNNNGC 1 cut(s) 298
BstSFI CTRYAG 1 cut(s) 144
BstV1I GCAGC 1 cut(s) 210
BstV2I GAAGAC 1 cut(s) 96
BstX2I RGATCY 1 cut(s) 26
BstYI RGATCY 1 cut(s) 26
Bsu36I CCTNAGG 2 cut(s) 171, 321
BtsI GCAGTG 1 cut(s) 76
BtsIMutI CAGTG 2 cut(s) 76, 126
CviAII CATG 1 cut(s) 313
CviJI RGCY 3 cut(s) 5, 208, 284
CviKI_1 RGCY 3 cut(s) 5, 208, 284
DdeI CTNAG 2 cut(s) 171, 321
DpnI GATC 3 cut(s) 28, 167, 270
DpnII GATC 3 cut(s) 26, 165, 268
DraI TTTAAA 1 cut(s) 97
Eco81I CCTNAGG 2 cut(s) 171, 321
EcoRI GAATTC 1 cut(s) 74
FaeI CATG 1 cut(s) 316
FaiI YATR 5 cut(s) 161, 188, 245, 264, 314
FaqI GGGAC 1 cut(s) 263
FatI CATG 1 cut(s) 312
Fnu4HI GCNGC 1 cut(s) 224
Fsp4HI GCNGC 1 cut(s) 224
FspBI CTAG 3 cut(s) 66, 272, 285
GluI GCNGC 1 cut(s) 224
GsuI CTGGAG 1 cut(s) 300
Hin1II CATG 1 cut(s) 316
HincII GTYRAC 1 cut(s) 141
HindII GTYRAC 1 cut(s) 141
HinfI GANTC 2 cut(s) 101, 316
HphI GGTGA 2 cut(s) 136, 175
Hpy166II GTNNAC 1 cut(s) 141
Hpy188III TCNNGA 2 cut(s) 79, 279
Hpy8I GTNNAC 1 cut(s) 141
HpyCH4V TGCA 1 cut(s) 181
HpyF10VI GCNNNNNNNGC 1 cut(s) 298
HpyF3I CTNAG 2 cut(s) 171, 321
Hsp92II CATG 1 cut(s) 316
Kzo9I GATC 3 cut(s) 26, 165, 268
LmnI GCTCC 3 cut(s) 10, 205, 281
LpnPI CCDG 4 cut(s) 15, 21, 132, 264
Lsp1109I GCAGC 1 cut(s) 210
LweI GCATC 1 cut(s) 268
MaeI CTAG 3 cut(s) 66, 272, 285
MaeIII GTNAC 1 cut(s) 234
MalI GATC 3 cut(s) 28, 167, 270
MboI GATC 3 cut(s) 26, 165, 268
MboII GAAGA 1 cut(s) 101
MflI RGATCY 1 cut(s) 26
MluCI AATT 2 cut(s) 17, 74
MlyI GAGTC 1 cut(s) 325
MnlI CCTC 3 cut(s) 79, 240, 333
MseI TTAA 3 cut(s) 96, 129, 201
MwoI GCNNNNNNNGC 1 cut(s) 298
NdeII GATC 3 cut(s) 26, 165, 268
NlaIII CATG 1 cut(s) 316
NlaIV GGNNCC 1 cut(s) 6
PfeI GAWTC 1 cut(s) 101
PkrI GCNGC 1 cut(s) 225
PleI GAGTC 1 cut(s) 324
PpsI GAGTC 1 cut(s) 324
PspN4I GGNNCC 1 cut(s) 6
PsuI RGATCY 1 cut(s) 26
SaqAI TTAA 3 cut(s) 96, 129, 201
SatI GCNGC 1 cut(s) 224
Sau3AI GATC 3 cut(s) 26, 165, 268
SchI GAGTC 1 cut(s) 325
SetI ASST 4 cut(s) 62, 210, 244, 286
SfaNI GCATC 1 cut(s) 268
SfcI CTRYAG 1 cut(s) 144
Sse9I AATT 2 cut(s) 17, 74
SsiI CCGC 1 cut(s) 310
SspMI CTAG 3 cut(s) 66, 272, 285
TaqI TCGA 1 cut(s) 78
TasI AATT 2 cut(s) 17, 74
TfiI GAWTC 1 cut(s) 101
Tru1I TTAA 3 cut(s) 96, 129, 201
Tru9I TTAA 3 cut(s) 96, 129, 201
TscAI CASTG 2 cut(s) 76, 126
TseI GCWGC 1 cut(s) 223
TspRI CASTG 2 cut(s) 76, 126
XapI RAATTY 1 cut(s) 74
XspI CTAG 3 cut(s) 66, 272, 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.