FvH4_2g02661

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000291
Physical Location & Seq
Forward (+)
2135702 .. 2136127
426 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g02661.t1

Sequence Viewer

Length: 321 bp
ATGGCGAATGAAGCACCAATTACGCAAGCTGCATTTCAAGCTTTTCAACCAGAAATGCGAAATGCTCTTGCACAAATCGCCCAAGCTGTGAATGGAAATCCTCAGAGTCAAAATCCTATTCCAGCCAACAACAATCAACGGGCTCCTGCTGGCAACAATCGCAGGCCAATTTATGAAGATGATTCCAGTGATGAAGAAGATTTCCTTGATTGGTTATCGGAAGTGGAGCGTTTCTTTGACTACATGGATATTCAAGAGCACAAAAAGGTGAAACTAGTTGCTTATAAGCTGAAGGGTGGCGCTTCAGCATGGTGGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotrans_gag gag-asp_proteas zf-CCHC

Protein Analysis

107

Amino Acids

12.06

Weight (kDa)

4.7

Isoelectric Point (pI)

48.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000291)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00860
fragaria_vesca FvH4_1g23712 FvH4_1g29809 FvH4_1g29810 FvH4_2g02661 FvH4_2g13451 FvH4_2g17921 FvH4_2g17922 FvH4_2g19251 FvH4_2g19252 FvH4_2g28221 FvH4_2g35961 FvH4_3g10372 FvH4_3g12461 FvH4_3g12461 FvH4_3g27861 FvH4_3g34591 FvH4_3g40201 FvH4_3g44612 FvH4_4g08352 FvH4_4g12251 FvH4_4g12742 FvH4_4g13904 FvH4_4g14287 FvH4_4g15243 FvH4_4g24071 FvH4_4g33448 FvH4_5g21912 FvH4_5g39371 FvH4_6g14992 FvH4_6g15221 FvH4_6g20603 FvH4_6g31093 FvH4_6g32372 FvH4_6g33012
malus_domestica MD11G1009100.v1.1 MD13G1145000.v1.1 MD16G1138700.v1.1
prunus_persica Prupe.5G246300_v2.0.a1 Prupe.7G034800_v2.0.a1 Prupe.8G084500_v2.0.a1
pyrus_communis pycom01g18240 pycom04g00330 pycom05g09010 pycom06g01670 pycom06g01690 pycom06g07180 pycom06g11620 pycom10g05720 pycom1134g00040 pycom1134g00060 pycom12486g00010 pycom12555g00230 pycom13g21670 pycom13g23130 pycom13g23140 pycom14g10580
rosa_chinensis RchiOBHm_Chr1g0330691 RchiOBHm_Chr2g0106171 RchiOBHm_Chr2g0134731 RchiOBHm_Chr2g0142791 RchiOBHm_Chr2g0149861 RchiOBHm_Chr3g0452401 RchiOBHm_Chr3g0461881 RchiOBHm_Chr4g0401341 RchiOBHm_Chr5g0075641 RchiOBHm_Chr6g0265961 RchiOBHm_Chr7g0200201 RchiOBHm_Chr7g0237811
rosa_laevigata RLG00000002773
rosa_multiflora Rmu_co8037806.1_g000001 Rmu_co8445989.1_g000001 Rmu_sc0000745.1_g000039 Rmu_sc0004448.1_g000029 Rmu_sc0004488.1_g000002 Rmu_sc0004591.1_g000018 Rmu_sc0005065.1_g000030 Rmu_sc0005150.1_g000005 Rmu_sc0005654.1_g000011 Rmu_sc0006986.1_g000016
rosa_roxburghii Rroxscaffold_164G00436490 Rroxscaffold_175G00432490 Rroxscaffold_1G00059440 Rroxscaffold_1G00064410 Rroxscaffold_2G00100310 Rroxscaffold_2G00128170 Rroxscaffold_3G00239420 Rroxscaffold_3G00264970 Rroxscaffold_3G00271550 Rroxscaffold_4G00300240 Rroxscaffold_5G00385050 Rroxscaffold_6G00399720
rosa_rugosa Rorug02G0252200
rosa_samantha Rh2DG251900 Rh7CG329900
rosa_wichuraiana Rw0G004800 Rw1G000850 Rw1G022350 Rw2G027030 Rw2G027760 Rw2G028410 Rw2G029130 Rw2G029390 Rw2G032490 Rw2G039460 Rw2G047800 Rw2G050340 Rw3G026430 Rw4G018370 Rw4G030750 Rw4G033140 Rw5G011950 Rw5G012010 Rw5G029280 Rw5G040190 Rw5G044570 Rw5G048240 Rw6G000340 Rw6G010140 Rw6G026480 Rw7G033750 Rw7G037250 Rw7G042080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 285
AcuI CTGAAG 2 cut(s) 288, 311
AgsI TTSAA 3 cut(s) 38, 47, 254
AhlI ACTAGT 1 cut(s) 274
AluBI AGCT 4 cut(s) 29, 41, 86, 289
AluI AGCT 4 cut(s) 29, 41, 86, 289
Alw21I GWGCWC 1 cut(s) 261
AoxI GGCC 1 cut(s) 164
ApeKI GCWGC 1 cut(s) 29
AspLEI GCGC 1 cut(s) 302
AsuHPI GGTGA 1 cut(s) 280
BanII GRGCYC 1 cut(s) 145
Bbv12I GWGCWC 1 cut(s) 261
BbvI GCAGC 1 cut(s) 16
BcuI ACTAGT 1 cut(s) 274
BfaI CTAG 1 cut(s) 275
BfoI RGCGCY 1 cut(s) 303
BisI GCNGC 1 cut(s) 30
BlsI GCNGC 1 cut(s) 31
BmiI GGNNCC 1 cut(s) 144
Bse1I ACTGG 1 cut(s) 186
BseMII CTCAG 1 cut(s) 116
BseNI ACTGG 1 cut(s) 186
BseXI GCAGC 1 cut(s) 16
BshFI GGCC 1 cut(s) 166
BsiHKAI GWGCWC 1 cut(s) 261
BsnI GGCC 1 cut(s) 166
Bsp1286I GDGCHC 2 cut(s) 145, 261
BspANI GGCC 1 cut(s) 166
BspCNI CTCAG 1 cut(s) 115
BspLI GGNNCC 1 cut(s) 144
BsrI ACTGG 1 cut(s) 186
BstC8I GCNNGC 3 cut(s) 27, 151, 164
BstDEI CTNAG 1 cut(s) 102
BstH2I RGCGCY 1 cut(s) 303
BstHHI GCGC 1 cut(s) 302
BstMWI GCNNNNNNNGC 4 cut(s) 11, 38, 77, 159
BstV1I GCAGC 1 cut(s) 16
BsuRI GGCC 1 cut(s) 166
BtsIMutI CAGTG 1 cut(s) 193
Cac8I GCNNGC 3 cut(s) 27, 151, 164
CfoI GCGC 1 cut(s) 302
CviAII CATG 2 cut(s) 244, 309
CviJI RGCY 7 cut(s) 29, 41, 86, 125, 143, 166, 289
CviKI_1 RGCY 7 cut(s) 29, 41, 86, 125, 143, 166, 289
DdeI CTNAG 1 cut(s) 102
Eco24I GRGCYC 1 cut(s) 145
Eco57I CTGAAG 2 cut(s) 288, 311
EcoT38I GRGCYC 1 cut(s) 145
FaeI CATG 2 cut(s) 247, 312
FaiI YATR 4 cut(s) 174, 245, 285, 310
FalI AAGNNNNNCTT 2 cut(s) 189, 221
FatI CATG 2 cut(s) 243, 308
Fnu4HI GCNGC 1 cut(s) 30
FriOI GRGCYC 1 cut(s) 145
Fsp4HI GCNGC 1 cut(s) 30
FspBI CTAG 1 cut(s) 275
GlaI GCGC 1 cut(s) 301
GluI GCNGC 1 cut(s) 30
HaeII RGCGCY 1 cut(s) 303
HaeIII GGCC 1 cut(s) 166
HhaI GCGC 1 cut(s) 302
Hin1II CATG 2 cut(s) 247, 312
Hin6I GCGC 1 cut(s) 300
HinP1I GCGC 1 cut(s) 300
HindIII AAGCTT 1 cut(s) 39
HinfI GANTC 2 cut(s) 106, 182
HphI GGTGA 1 cut(s) 280
Hpy188I TCNGA 2 cut(s) 105, 220
Hpy188III TCNNGA 1 cut(s) 254
HpyAV CCTTC 1 cut(s) 286
HpyCH4V TGCA 2 cut(s) 32, 71
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 38, 77, 159
HpyF3I CTNAG 1 cut(s) 102
Hsp92II CATG 2 cut(s) 247, 312
HspAI GCGC 1 cut(s) 300
LmnI GCTCC 2 cut(s) 148, 226
LpnPI CCDG 6 cut(s) 63, 135, 135, 148, 159, 199
Lsp1109I GCAGC 1 cut(s) 16
MaeI CTAG 1 cut(s) 275
MboII GAAGA 3 cut(s) 188, 206, 209
MhlI GDGCHC 2 cut(s) 145, 261
MluCI AATT 2 cut(s) 18, 168
MlyI GAGTC 1 cut(s) 115
MnlI CCTC 1 cut(s) 111
MwoI GCNNNNNNNGC 4 cut(s) 11, 38, 77, 159
NlaIII CATG 2 cut(s) 247, 312
NlaIV GGNNCC 1 cut(s) 144
PfeI GAWTC 1 cut(s) 182
PkrI GCNGC 1 cut(s) 31
PleI GAGTC 1 cut(s) 114
PpsI GAGTC 1 cut(s) 114
PsiI TTATAA 1 cut(s) 285
PspN4I GGNNCC 1 cut(s) 144
SatI GCNGC 1 cut(s) 30
SchI GAGTC 1 cut(s) 115
SduI GDGCHC 2 cut(s) 145, 261
SetI ASST 5 cut(s) 31, 43, 88, 270, 291
SpeI ACTAGT 1 cut(s) 274
Sse9I AATT 2 cut(s) 18, 168
SspMI CTAG 1 cut(s) 275
TasI AATT 2 cut(s) 18, 168
TfiI GAWTC 1 cut(s) 182
TscAI CASTG 1 cut(s) 193
TseI GCWGC 1 cut(s) 29
TspDTI ATGAA 3 cut(s) 24, 189, 207
TspRI CASTG 1 cut(s) 193
XcmI CCANNNNNNNNNTGG 1 cut(s) 89
XspI CTAG 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.