FvH4_2g28221
ERF Family

DNA RNA polymerases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000291
Physical Location & Seq
Reverse (-)
22196899 .. 22197964
1066 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g28221.t1

Sequence Viewer

Length: 744 bp
ATGACAGAACGATTCCTGCCGGAGGACTATGAACAGATTCTTTACAAGATGTACCTAGATTGTGTTCAAGGGGCGAAGACTGTAACAGAGTATACCGCTGAGTTTGTGCGTCTTTCTGAGCGCAATGACTTAGGCGAATCTGAAGGGCAGAAGGTTGCTCGGTACATCAGTGGGTTGAGACCTTCCATACAAGAGAAGATTGGCTTGCAAACTATGTGGTCTGTGACTGAGGTTGCAAGTTTGGCGATAAAGGTGGAGCTGATGGAGAAGTCCCCTAGGGTTTTTTTTCAGTTCCCAAGATTCACTAGTCAGAGGAGTACTGAAGTCGGGAGTTCTGTGGGAGATAAAGGGAAAACAGTGTCGCAGAATACGGGTGGAATGACCACCAGGGCATCCAGTGTTGTTAACAAAGAGGGTGGCATTTCTGGTTTTGGCAGTACTACCAGGGCGACTCGGGCAGCACTTGTGCTGCGACCTTTTAACCCTTATGCAAGGCCTTTTCCAGGAACTTGTTATAAGTGTTTACAACCTGGTCATAGATCCAACGAGTGTACTGCACCTCCGAAGGTGGTTAAAGCAGTTCAGGCTTTAGTCGAGGCCTGTGAGGAAGACGAGACGGAGGAAGGAGGCGATGACTATGAAGGGGCTGAATTTGCAGTGGAAGATTCTCCAGAAAAGGTGAACATTGTATTGCAGAGAATTCTGTTGTCTCCCAAGGAGGAGGACGGGGTCGGGATAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 Retrotrans_gag rve zf-H2C2

Protein Analysis

248

Amino Acids

27.26

Weight (kDa)

5.06

Isoelectric Point (pI)

58.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotrans_gag PF03732 2 - 61 6e-06 Retrotransposon gag protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000291)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00860
fragaria_vesca FvH4_1g23712 FvH4_1g29809 FvH4_1g29810 FvH4_2g02661 FvH4_2g13451 FvH4_2g17921 FvH4_2g17922 FvH4_2g19251 FvH4_2g19252 FvH4_2g28221 FvH4_2g35961 FvH4_3g10372 FvH4_3g12461 FvH4_3g12461 FvH4_3g27861 FvH4_3g34591 FvH4_3g40201 FvH4_3g44612 FvH4_4g08352 FvH4_4g12251 FvH4_4g12742 FvH4_4g13904 FvH4_4g14287 FvH4_4g15243 FvH4_4g24071 FvH4_4g33448 FvH4_5g21912 FvH4_5g39371 FvH4_6g14992 FvH4_6g15221 FvH4_6g20603 FvH4_6g31093 FvH4_6g32372 FvH4_6g33012
malus_domestica MD11G1009100.v1.1 MD13G1145000.v1.1 MD16G1138700.v1.1
prunus_persica Prupe.5G246300_v2.0.a1 Prupe.7G034800_v2.0.a1 Prupe.8G084500_v2.0.a1
pyrus_communis pycom01g18240 pycom04g00330 pycom05g09010 pycom06g01670 pycom06g01690 pycom06g07180 pycom06g11620 pycom10g05720 pycom1134g00040 pycom1134g00060 pycom12486g00010 pycom12555g00230 pycom13g21670 pycom13g23130 pycom13g23140 pycom14g10580
rosa_chinensis RchiOBHm_Chr1g0330691 RchiOBHm_Chr2g0106171 RchiOBHm_Chr2g0134731 RchiOBHm_Chr2g0142791 RchiOBHm_Chr2g0149861 RchiOBHm_Chr3g0452401 RchiOBHm_Chr3g0461881 RchiOBHm_Chr4g0401341 RchiOBHm_Chr5g0075641 RchiOBHm_Chr6g0265961 RchiOBHm_Chr7g0200201 RchiOBHm_Chr7g0237811
rosa_laevigata RLG00000002773
rosa_multiflora Rmu_co8037806.1_g000001 Rmu_co8445989.1_g000001 Rmu_sc0000745.1_g000039 Rmu_sc0004448.1_g000029 Rmu_sc0004488.1_g000002 Rmu_sc0004591.1_g000018 Rmu_sc0005065.1_g000030 Rmu_sc0005150.1_g000005 Rmu_sc0005654.1_g000011 Rmu_sc0006986.1_g000016
rosa_roxburghii Rroxscaffold_164G00436490 Rroxscaffold_175G00432490 Rroxscaffold_1G00059440 Rroxscaffold_1G00064410 Rroxscaffold_2G00100310 Rroxscaffold_2G00128170 Rroxscaffold_3G00239420 Rroxscaffold_3G00264970 Rroxscaffold_3G00271550 Rroxscaffold_4G00300240 Rroxscaffold_5G00385050 Rroxscaffold_6G00399720
rosa_rugosa Rorug02G0252200
rosa_samantha Rh2DG251900 Rh7CG329900
rosa_wichuraiana Rw0G004800 Rw1G000850 Rw1G022350 Rw2G027030 Rw2G027760 Rw2G028410 Rw2G029130 Rw2G029390 Rw2G032490 Rw2G039460 Rw2G047800 Rw2G050340 Rw3G026430 Rw4G018370 Rw4G030750 Rw4G033140 Rw5G011950 Rw5G012010 Rw5G029280 Rw5G040190 Rw5G044570 Rw5G048240 Rw6G000340 Rw6G010140 Rw6G026480 Rw7G033750 Rw7G037250 Rw7G042080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 516
AccI GTMKAC 1 cut(s) 92
AciI CCGC 1 cut(s) 96
AclWI GGATC 1 cut(s) 534
AcsI RAATTY 2 cut(s) 650, 699
AcuI CTGAAG 2 cut(s) 162, 342
AfaI GTAC 5 cut(s) 53, 164, 319, 439, 553
AfiI CCNNNNNNNGG 2 cut(s) 22, 503
AgsI TTSAA 1 cut(s) 68
AhlI ACTAGT 1 cut(s) 305
AjnI CCWGG 4 cut(s) 386, 443, 502, 529
AluBI AGCT 1 cut(s) 259
AluI AGCT 1 cut(s) 259
Alw26I GTCTC 3 cut(s) 172, 608, 714
AlwI GGATC 1 cut(s) 534
Ama87I CYCGRG 1 cut(s) 453
AoxI GGCC 2 cut(s) 494, 597
ApeKI GCWGC 2 cut(s) 458, 469
ApoI RAATTY 2 cut(s) 650, 699
Asp700I GAANNNNTTC 1 cut(s) 36
AspA2I CCTAGG 1 cut(s) 275
AspLEI GCGC 1 cut(s) 123
AsuHPI GGTGA 1 cut(s) 691
AvaI CYCGRG 1 cut(s) 453
AvrII CCTAGG 1 cut(s) 275
BaeI ACNNNNGTAYC 2 cut(s) 154, 187
BbsI GAAGAC 2 cut(s) 83, 615
BbvI GCAGC 2 cut(s) 456, 470
BccI CCATC 1 cut(s) 256
BcgI CGANNNNNNTGC 2 cut(s) 536, 570
BciT130I CCWGG 4 cut(s) 388, 445, 504, 531
BcoDI GTCTC 3 cut(s) 172, 608, 714
BcuI ACTAGT 1 cut(s) 305
BfaI CTAG 3 cut(s) 56, 276, 306
BisI GCNGC 2 cut(s) 459, 470
BlnI CCTAGG 1 cut(s) 275
BlsI GCNGC 2 cut(s) 460, 471
BmcAI AGTACT 2 cut(s) 319, 439
Bme1390I CCNGG 4 cut(s) 388, 445, 504, 531
BmeT110I CYCGRG 1 cut(s) 453
BmrFI CCNGG 4 cut(s) 388, 445, 504, 531
BmsI GCATC 1 cut(s) 401
BpiI GAAGAC 2 cut(s) 83, 615
BpmI CTGGAG 1 cut(s) 654
BsaI GGTCTC 1 cut(s) 172
BsaJI CCNNGG 4 cut(s) 275, 387, 444, 714
BsaXI ACNNNNNCTCC 2 cut(s) 544, 574
Bsc4I CCNNNNNNNGG 2 cut(s) 22, 503
Bse1I ACTGG 1 cut(s) 396
Bse3DI GCAATG 1 cut(s) 130
BseBI CCWGG 4 cut(s) 388, 445, 504, 531
BseDI CCNNGG 4 cut(s) 275, 387, 444, 714
BseGI GGATG 1 cut(s) 392
BseLI CCNNNNNNNGG 2 cut(s) 22, 503
BseMI GCAATG 1 cut(s) 130
BseMII CTCAG 3 cut(s) 90, 108, 219
BseNI ACTGG 1 cut(s) 396
BseRI GAGGAG 2 cut(s) 328, 734
BseXI GCAGC 2 cut(s) 456, 470
BsgI GTGCAG 1 cut(s) 540
BshFI GGCC 2 cut(s) 496, 599
BsiHKCI CYCGRG 1 cut(s) 453
BsiSI CCGG 1 cut(s) 20
BslFI GGGAC 1 cut(s) 256
BslI CCNNNNNNNGG 2 cut(s) 22, 503
BsmAI GTCTC 3 cut(s) 172, 608, 714
BsmBI CGTCTC 1 cut(s) 608
BsmFI GGGAC 1 cut(s) 256
BsnI GGCC 2 cut(s) 496, 599
Bso31I GGTCTC 1 cut(s) 172
BsoBI CYCGRG 1 cut(s) 453
Bsp143I GATC 1 cut(s) 539
BspACI CCGC 1 cut(s) 96
BspANI GGCC 2 cut(s) 496, 599
BspCNI CTCAG 3 cut(s) 91, 109, 220
BspPI GGATC 1 cut(s) 534
BspTNI GGTCTC 1 cut(s) 172
BsrDI GCAATG 1 cut(s) 130
BsrI ACTGG 1 cut(s) 396
BssECI CCNNGG 4 cut(s) 275, 387, 444, 714
BssMI GATC 1 cut(s) 539
BssNAI GTATAC 1 cut(s) 93
BssT1I CCWWGG 2 cut(s) 275, 714
Bst1107I GTATAC 1 cut(s) 93
Bst2UI CCWGG 4 cut(s) 388, 445, 504, 531
Bst4CI ACNGT 2 cut(s) 82, 358
BstC8I GCNNGC 1 cut(s) 206
BstDEI CTNAG 4 cut(s) 99, 117, 130, 228
BstENI CCTNNNNNAGG 2 cut(s) 20, 501
BstF5I GGATG 1 cut(s) 392
BstHHI GCGC 1 cut(s) 123
BstKTI GATC 1 cut(s) 542
BstMAI GTCTC 3 cut(s) 172, 608, 714
BstMBI GATC 1 cut(s) 539
BstMWI GCNNNNNNNGC 4 cut(s) 242, 455, 584, 653
BstNI CCWGG 4 cut(s) 388, 445, 504, 531
BstSCI CCNGG 4 cut(s) 386, 443, 502, 529
BstV1I GCAGC 2 cut(s) 456, 470
BstV2I GAAGAC 2 cut(s) 83, 615
BstX2I RGATCY 1 cut(s) 539
BstYI RGATCY 1 cut(s) 539
BstZ17I GTATAC 1 cut(s) 93
BsuRI GGCC 2 cut(s) 496, 599
BtgZI GCGATG 1 cut(s) 645
BtsCI GGATG 1 cut(s) 392
BtsI GCAGTG 1 cut(s) 663
BtsIMutI CAGTG 4 cut(s) 175, 363, 403, 663
Cac8I GCNNGC 1 cut(s) 206
CfoI GCGC 1 cut(s) 123
CseI GACGC 1 cut(s) 98
CsiI ACCWGGT 1 cut(s) 529
Csp6I GTAC 5 cut(s) 52, 163, 318, 438, 552
CspCI CAANNNNNGTGG 4 cut(s) 197, 232, 397, 432
CviJI RGCY 6 cut(s) 204, 259, 496, 587, 599, 647
CviKI_1 RGCY 6 cut(s) 204, 259, 496, 587, 599, 647
CviQI GTAC 5 cut(s) 52, 163, 318, 438, 552
DdeI CTNAG 4 cut(s) 99, 117, 130, 228
DpnI GATC 1 cut(s) 541
DpnII GATC 1 cut(s) 539
Eco130I CCWWGG 2 cut(s) 275, 714
Eco147I AGGCCT 2 cut(s) 496, 599
Eco31I GGTCTC 1 cut(s) 172
Eco57I CTGAAG 2 cut(s) 162, 342
Eco88I CYCGRG 1 cut(s) 453
EcoNI CCTNNNNNAGG 2 cut(s) 20, 501
EcoRI GAATTC 1 cut(s) 699
EcoRII CCWGG 4 cut(s) 386, 443, 502, 529
EcoT14I CCWWGG 2 cut(s) 275, 714
ErhI CCWWGG 2 cut(s) 275, 714
Esp3I CGTCTC 1 cut(s) 608
FaiI YATR 8 cut(s) 30, 93, 188, 215, 489, 516, 537, 639
FalI AAGNNNNNCTT 2 cut(s) 188, 220
FaqI GGGAC 1 cut(s) 256
FblI GTMKAC 1 cut(s) 92
Fnu4HI GCNGC 2 cut(s) 459, 470
FokI GGATG 1 cut(s) 379
Fsp4HI GCNGC 2 cut(s) 459, 470
FspBI CTAG 3 cut(s) 56, 276, 306
GlaI GCGC 1 cut(s) 122
GluI GCNGC 2 cut(s) 459, 470
GsuI CTGGAG 1 cut(s) 654
HaeIII GGCC 2 cut(s) 496, 599
HapII CCGG 1 cut(s) 20
HgaI GACGC 1 cut(s) 98
HhaI GCGC 1 cut(s) 123
Hin6I GCGC 1 cut(s) 121
HinP1I GCGC 1 cut(s) 121
HincII GTYRAC 1 cut(s) 406
HindII GTYRAC 1 cut(s) 406
HinfI GANTC 6 cut(s) 12, 37, 137, 300, 451, 665
HpaI GTTAAC 1 cut(s) 406
HpaII CCGG 1 cut(s) 20
HphI GGTGA 1 cut(s) 691
Hpy166II GTNNAC 5 cut(s) 93, 406, 524, 552, 682
Hpy188I TCNGA 4 cut(s) 118, 142, 312, 564
Hpy188III TCNNGA 3 cut(s) 328, 671, 733
Hpy8I GTNNAC 5 cut(s) 93, 406, 524, 552, 682
HpyAV CCTTC 6 cut(s) 137, 145, 192, 559, 617, 635
HpyCH4III ACNGT 2 cut(s) 82, 358
HpyCH4V TGCA 6 cut(s) 208, 236, 491, 557, 656, 694
HpyF10VI GCNNNNNNNGC 4 cut(s) 242, 455, 584, 653
HpyF3I CTNAG 4 cut(s) 99, 117, 130, 228
HspAI GCGC 1 cut(s) 121
KspAI GTTAAC 1 cut(s) 406
Kzo9I GATC 1 cut(s) 539
LmnI GCTCC 1 cut(s) 256
Lsp1109I GCAGC 2 cut(s) 456, 470
LweI GCATC 1 cut(s) 401
MabI ACCWGGT 1 cut(s) 529
MaeI CTAG 3 cut(s) 56, 276, 306
MaeIII GTNAC 2 cut(s) 82, 223
MalI GATC 1 cut(s) 541
MboI GATC 1 cut(s) 539
MboII GAAGA 4 cut(s) 88, 208, 620, 674
MflI RGATCY 1 cut(s) 539
MluCI AATT 2 cut(s) 650, 699
MlyI GAGTC 1 cut(s) 445
MmeI TCCRAC 1 cut(s) 567
MroXI GAANNNNTTC 1 cut(s) 36
MseI TTAA 3 cut(s) 405, 480, 573
MspA1I CMGCKG 1 cut(s) 98
MspI CCGG 1 cut(s) 20
MspR9I CCNGG 4 cut(s) 388, 445, 504, 531
MvaI CCWGG 4 cut(s) 388, 445, 504, 531
MwoI GCNNNNNNNGC 4 cut(s) 242, 455, 584, 653
NdeII GATC 1 cut(s) 539
NmuCI GTSAC 1 cut(s) 223
PceI AGGCCT 2 cut(s) 496, 599
PdmI GAANNNNTTC 1 cut(s) 36
PfeI GAWTC 5 cut(s) 12, 37, 137, 300, 665
PflFI GACNNNGTC 1 cut(s) 728
PfoI TCCNGGA 1 cut(s) 502
PkrI GCNGC 2 cut(s) 460, 471
PleI GAGTC 1 cut(s) 445
PpsI GAGTC 1 cut(s) 445
PsiI TTATAA 1 cut(s) 516
Psp6I CCWGG 4 cut(s) 386, 443, 502, 529
PspGI CCWGG 4 cut(s) 386, 443, 502, 529
PsuI RGATCY 1 cut(s) 539
PsyI GACNNNGTC 1 cut(s) 728
RsaI GTAC 5 cut(s) 53, 164, 319, 439, 553
RsaNI GTAC 5 cut(s) 52, 163, 318, 438, 552
SaqAI TTAA 3 cut(s) 405, 480, 573
SatI GCNGC 2 cut(s) 459, 470
Sau3AI GATC 1 cut(s) 539
ScaI AGTACT 2 cut(s) 319, 439
SchI GAGTC 1 cut(s) 445
ScrFI CCNGG 4 cut(s) 388, 445, 504, 531
SexAI ACCWGGT 1 cut(s) 529
SfaNI GCATC 1 cut(s) 401
SpeI ACTAGT 1 cut(s) 305
Sse9I AATT 2 cut(s) 650, 699
SseBI AGGCCT 2 cut(s) 496, 599
SsiI CCGC 1 cut(s) 96
SspMI CTAG 3 cut(s) 56, 276, 306
StuI AGGCCT 2 cut(s) 496, 599
StyD4I CCNGG 4 cut(s) 386, 443, 502, 529
StyI CCWWGG 2 cut(s) 275, 714
TaaI ACNGT 2 cut(s) 82, 358
TaqI TCGA 1 cut(s) 594
TasI AATT 2 cut(s) 650, 699
TatI WGTACW 3 cut(s) 317, 437, 551
TfiI GAWTC 5 cut(s) 12, 37, 137, 300, 665
Tru1I TTAA 3 cut(s) 405, 480, 573
Tru9I TTAA 3 cut(s) 405, 480, 573
TscAI CASTG 4 cut(s) 175, 363, 403, 663
TseFI GTSAC 1 cut(s) 223
TseI GCWGC 2 cut(s) 458, 469
Tsp45I GTSAC 1 cut(s) 223
TspDTI ATGAA 2 cut(s) 45, 654
TspGWI ACGGA 1 cut(s) 632
TspRI CASTG 4 cut(s) 175, 363, 403, 663
Tth111I GACNNNGTC 1 cut(s) 728
XagI CCTNNNNNAGG 2 cut(s) 20, 501
XapI RAATTY 2 cut(s) 650, 699
XmaJI CCTAGG 1 cut(s) 275
XmiI GTMKAC 1 cut(s) 92
XmnI GAANNNNTTC 1 cut(s) 36
XspI CTAG 3 cut(s) 56, 276, 306
ZrmI AGTACT 2 cut(s) 319, 439
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.