FvH4_2g19251
ERF Family

DNA RNA polymerases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000291
Physical Location & Seq
Forward (+)
16404948 .. 16405409
462 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g19251.t1

Sequence Viewer

Length: 462 bp
ATGGTTCGTGGTGGACGCCGTGGTGGGCGCGGTCATCAAGGACGCGACCCCCGTGATGTCGAGAATGAAGAATTAAGGAGACAAGTGCAGCAATTGACAGAGCAATTGGAACGTTTTGAAACCAAGAGTCGTGAGGAAGATGAGTCGACCTCCAACGATGGCGATGAAAATCCCTTCTTTCACTTTCGTGCTCCGCATGAAGAGCCAGGTGGAGAGGGCAGGTATGATCGGGCTGGTCAGTTCGATATGAAGGTGGAGATTCTTGAGTTCGAAGGGAAGATCAAGCCTGAGGTGTTTATTGATTGGCTAAACATGGTGGAAAAGGTCTTTGACTATAAAGAGATGCCAGACCATCGGAAGGTGAAGCTTGTTGCTGTCAAGTTAACAAAAAATGCATTAGCTTGGTGGGAGCAATTGAACATGAGGAGGCTGAGGATGGGAAAATCAAGAATTACTACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 Retrotrans_gag rve zf-CCHC zf-H2C2

Protein Analysis

154

Amino Acids

18.16

Weight (kDa)

6.46

Isoelectric Point (pI)

45.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000291)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00860
fragaria_vesca FvH4_1g23712 FvH4_1g29809 FvH4_1g29810 FvH4_2g02661 FvH4_2g13451 FvH4_2g17921 FvH4_2g17922 FvH4_2g19251 FvH4_2g19252 FvH4_2g28221 FvH4_2g35961 FvH4_3g10372 FvH4_3g12461 FvH4_3g12461 FvH4_3g27861 FvH4_3g34591 FvH4_3g40201 FvH4_3g44612 FvH4_4g08352 FvH4_4g12251 FvH4_4g12742 FvH4_4g13904 FvH4_4g14287 FvH4_4g15243 FvH4_4g24071 FvH4_4g33448 FvH4_5g21912 FvH4_5g39371 FvH4_6g14992 FvH4_6g15221 FvH4_6g20603 FvH4_6g31093 FvH4_6g32372 FvH4_6g33012
malus_domestica MD11G1009100.v1.1 MD13G1145000.v1.1 MD16G1138700.v1.1
prunus_persica Prupe.5G246300_v2.0.a1 Prupe.7G034800_v2.0.a1 Prupe.8G084500_v2.0.a1
pyrus_communis pycom01g18240 pycom04g00330 pycom05g09010 pycom06g01670 pycom06g01690 pycom06g07180 pycom06g11620 pycom10g05720 pycom1134g00040 pycom1134g00060 pycom12486g00010 pycom12555g00230 pycom13g21670 pycom13g23130 pycom13g23140 pycom14g10580
rosa_chinensis RchiOBHm_Chr1g0330691 RchiOBHm_Chr2g0106171 RchiOBHm_Chr2g0134731 RchiOBHm_Chr2g0142791 RchiOBHm_Chr2g0149861 RchiOBHm_Chr3g0452401 RchiOBHm_Chr3g0461881 RchiOBHm_Chr4g0401341 RchiOBHm_Chr5g0075641 RchiOBHm_Chr6g0265961 RchiOBHm_Chr7g0200201 RchiOBHm_Chr7g0237811
rosa_laevigata RLG00000002773
rosa_multiflora Rmu_co8037806.1_g000001 Rmu_co8445989.1_g000001 Rmu_sc0000745.1_g000039 Rmu_sc0004448.1_g000029 Rmu_sc0004488.1_g000002 Rmu_sc0004591.1_g000018 Rmu_sc0005065.1_g000030 Rmu_sc0005150.1_g000005 Rmu_sc0005654.1_g000011 Rmu_sc0006986.1_g000016
rosa_roxburghii Rroxscaffold_164G00436490 Rroxscaffold_175G00432490 Rroxscaffold_1G00059440 Rroxscaffold_1G00064410 Rroxscaffold_2G00100310 Rroxscaffold_2G00128170 Rroxscaffold_3G00239420 Rroxscaffold_3G00264970 Rroxscaffold_3G00271550 Rroxscaffold_4G00300240 Rroxscaffold_5G00385050 Rroxscaffold_6G00399720
rosa_rugosa Rorug02G0252200
rosa_samantha Rh2DG251900 Rh7CG329900
rosa_wichuraiana Rw0G004800 Rw1G000850 Rw1G022350 Rw2G027030 Rw2G027760 Rw2G028410 Rw2G029130 Rw2G029390 Rw2G032490 Rw2G039460 Rw2G047800 Rw2G050340 Rw3G026430 Rw4G018370 Rw4G030750 Rw4G033140 Rw5G011950 Rw5G012010 Rw5G029280 Rw5G040190 Rw5G044570 Rw5G048240 Rw6G000340 Rw6G010140 Rw6G026480 Rw7G033750 Rw7G037250 Rw7G042080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 210
AccI GTMKAC 1 cut(s) 146
AccII CGCG 2 cut(s) 30, 45
AciI CCGC 2 cut(s) 30, 194
AclI AACGTT 1 cut(s) 112
AcyI GRCGYC 1 cut(s) 16
AfiI CCNNNNNNNGG 1 cut(s) 358
AgsI TTSAA 2 cut(s) 119, 418
AjnI CCWGG 1 cut(s) 205
AleI CACNNNNGTG 1 cut(s) 186
AluBI AGCT 2 cut(s) 367, 401
AluI AGCT 2 cut(s) 367, 401
Alw21I GWGCWC 1 cut(s) 193
Alw26I GTCTC 1 cut(s) 73
ApeKI GCWGC 1 cut(s) 88
AspLEI GCGC 1 cut(s) 30
AsuHPI GGTGA 1 cut(s) 373
AsuII TTCGAA 1 cut(s) 270
AxyI CCTNAGG 1 cut(s) 288
Bbv12I GWGCWC 1 cut(s) 193
BbvCI CCTCAGC 1 cut(s) 431
BbvI GCAGC 1 cut(s) 100
BccI CCATC 3 cut(s) 152, 360, 430
BceAI ACGGC 1 cut(s) 3
BciT130I CCWGG 1 cut(s) 207
BcoDI GTCTC 1 cut(s) 73
BfaI CTAG 1 cut(s) 460
BfuAI ACCTGC 1 cut(s) 210
BisI GCNGC 1 cut(s) 89
BlsI GCNGC 1 cut(s) 90
Bme1390I CCNGG 1 cut(s) 207
BmrFI CCNGG 1 cut(s) 207
BmsI GCATC 1 cut(s) 333
BplI GAGNNNNNCTC 2 cut(s) 134, 166
Bpu10I CCTNAGC 1 cut(s) 431
Bpu14I TTCGAA 1 cut(s) 270
BpuEI CTTGAG 1 cut(s) 284
BsaBI GATNNNNATC 1 cut(s) 168
BsaHI GRCGYC 1 cut(s) 16
BsaJI CCNNGG 1 cut(s) 19
Bsc4I CCNNNNNNNGG 1 cut(s) 358
Bse21I CCTNAGG 1 cut(s) 288
Bse8I GATNNNNATC 1 cut(s) 168
BseBI CCWGG 1 cut(s) 207
BseDI CCNNGG 1 cut(s) 19
BseGI GGATG 1 cut(s) 441
BseJI GATNNNNATC 1 cut(s) 168
BseLI CCNNNNNNNGG 1 cut(s) 358
BseMII CTCAG 2 cut(s) 279, 422
BseRI GAGGAG 1 cut(s) 439
BseXI GCAGC 1 cut(s) 100
BsgI GTGCAG 1 cut(s) 107
Bsh1236I CGCG 2 cut(s) 30, 45
BsiHKAI GWGCWC 1 cut(s) 193
BslI CCNNNNNNNGG 1 cut(s) 358
BsmAI GTCTC 1 cut(s) 73
Bsp119I TTCGAA 1 cut(s) 270
Bsp1286I GDGCHC 1 cut(s) 193
Bsp143I GATC 2 cut(s) 226, 279
BspACI CCGC 2 cut(s) 30, 194
BspCNI CTCAG 2 cut(s) 280, 423
BspFNI CGCG 2 cut(s) 30, 45
BspMI ACCTGC 1 cut(s) 210
BspQI GCTCTTC 1 cut(s) 195
BspT104I TTCGAA 1 cut(s) 270
BssECI CCNNGG 1 cut(s) 19
BssMI GATC 2 cut(s) 226, 279
BssNI GRCGYC 1 cut(s) 16
Bst2UI CCWGG 1 cut(s) 207
Bst6I CTCTTC 1 cut(s) 195
BstACI GRCGYC 1 cut(s) 16
BstBI TTCGAA 1 cut(s) 270
BstDEI CTNAG 2 cut(s) 288, 431
BstDSI CCRYGG 1 cut(s) 19
BstF5I GGATG 1 cut(s) 441
BstFNI CGCG 2 cut(s) 30, 45
BstHHI GCGC 1 cut(s) 30
BstKTI GATC 2 cut(s) 229, 282
BstMAI GTCTC 1 cut(s) 73
BstMBI GATC 2 cut(s) 226, 279
BstMWI GCNNNNNNNGC 1 cut(s) 202
BstNI CCWGG 1 cut(s) 207
BstSCI CCNGG 1 cut(s) 205
BstUI CGCG 2 cut(s) 30, 45
BstV1I GCAGC 1 cut(s) 100
Bsu36I CCTNAGG 1 cut(s) 288
BtgI CCRYGG 1 cut(s) 19
BtgZI GCGATG 1 cut(s) 177
BtsCI GGATG 1 cut(s) 441
BveI ACCTGC 1 cut(s) 210
CfoI GCGC 1 cut(s) 30
CseI GACGC 2 cut(s) 24, 51
CviAII CATG 3 cut(s) 197, 313, 421
CviJI RGCY 7 cut(s) 205, 233, 286, 307, 367, 401, 430
CviKI_1 RGCY 7 cut(s) 205, 233, 286, 307, 367, 401, 430
DdeI CTNAG 2 cut(s) 288, 431
DpnI GATC 2 cut(s) 228, 281
DpnII GATC 2 cut(s) 226, 279
Eam1104I CTCTTC 1 cut(s) 195
EarI CTCTTC 1 cut(s) 195
Eco81I CCTNAGG 1 cut(s) 288
EcoRII CCWGG 1 cut(s) 205
EcoT22I ATGCAT 1 cut(s) 397
FaeI CATG 3 cut(s) 200, 316, 424
FaiI YATR 6 cut(s) 198, 225, 248, 314, 336, 422
FatI CATG 3 cut(s) 196, 312, 420
FblI GTMKAC 1 cut(s) 146
Fnu4HI GCNGC 1 cut(s) 89
FokI GGATG 1 cut(s) 448
Fsp4HI GCNGC 1 cut(s) 89
FspBI CTAG 1 cut(s) 460
GlaI GCGC 1 cut(s) 29
GluI GCNGC 1 cut(s) 89
HgaI GACGC 2 cut(s) 24, 51
HhaI GCGC 1 cut(s) 30
Hin1I GRCGYC 1 cut(s) 16
Hin1II CATG 3 cut(s) 200, 316, 424
Hin6I GCGC 1 cut(s) 28
HinP1I GCGC 1 cut(s) 28
HincII GTYRAC 2 cut(s) 147, 384
HindII GTYRAC 2 cut(s) 147, 384
HindIII AAGCTT 1 cut(s) 365
HinfI GANTC 3 cut(s) 127, 143, 259
HpaI GTTAAC 1 cut(s) 384
HphI GGTGA 1 cut(s) 373
Hpy166II GTNNAC 3 cut(s) 14, 147, 384
Hpy188I TCNGA 1 cut(s) 357
Hpy188III TCNNGA 4 cut(s) 61, 131, 263, 447
Hpy8I GTNNAC 3 cut(s) 14, 147, 384
HpyAV CCTTC 4 cut(s) 184, 244, 266, 352
HpyCH4IV ACGT 1 cut(s) 112
HpyCH4V TGCA 2 cut(s) 88, 395
HpyF10VI GCNNNNNNNGC 1 cut(s) 202
HpyF3I CTNAG 2 cut(s) 288, 431
HpySE526I ACGT 1 cut(s) 112
Hsp92I GRCGYC 1 cut(s) 16
Hsp92II CATG 3 cut(s) 200, 316, 424
HspAI GCGC 1 cut(s) 28
KspAI GTTAAC 1 cut(s) 384
Kzo9I GATC 2 cut(s) 226, 279
LguI GCTCTTC 1 cut(s) 195
LmnI GCTCC 2 cut(s) 196, 409
LpnPI CCDG 6 cut(s) 192, 205, 219, 219, 300, 360
Lsp1109I GCAGC 1 cut(s) 100
LweI GCATC 1 cut(s) 333
MaeI CTAG 1 cut(s) 460
MaeII ACGT 1 cut(s) 112
MalI GATC 2 cut(s) 228, 281
MboI GATC 2 cut(s) 226, 279
MboII GAAGA 4 cut(s) 80, 149, 212, 289
MfeI CAATTG 3 cut(s) 92, 104, 413
MhlI GDGCHC 1 cut(s) 193
MluCI AATT 5 cut(s) 71, 92, 104, 413, 450
MlyI GAGTC 2 cut(s) 136, 152
MmeI TCCRAC 1 cut(s) 177
MnlI CCTC 7 cut(s) 127, 160, 208, 283, 417, 420, 426
Mph1103I ATGCAT 1 cut(s) 397
MseI TTAA 2 cut(s) 74, 383
MslI CAYNNNNRTG 1 cut(s) 186
MspR9I CCNGG 1 cut(s) 207
MunI CAATTG 3 cut(s) 92, 104, 413
MvaI CCWGG 1 cut(s) 207
MvnI CGCG 2 cut(s) 30, 45
MwoI GCNNNNNNNGC 1 cut(s) 202
NdeII GATC 2 cut(s) 226, 279
NlaIII CATG 3 cut(s) 200, 316, 424
NsiI ATGCAT 1 cut(s) 397
NspV TTCGAA 1 cut(s) 270
OliI CACNNNNGTG 1 cut(s) 186
PciSI GCTCTTC 1 cut(s) 195
PcsI WCGNNNNNNNCGW 1 cut(s) 49
PfeI GAWTC 1 cut(s) 259
PkrI GCNGC 1 cut(s) 90
PleI GAGTC 2 cut(s) 135, 151
PpsI GAGTC 2 cut(s) 135, 151
Psp1406I AACGTT 1 cut(s) 112
Psp6I CCWGG 1 cut(s) 205
PspGI CCWGG 1 cut(s) 205
RseI CAYNNNNRTG 1 cut(s) 186
SalI GTCGAC 1 cut(s) 145
SapI GCTCTTC 1 cut(s) 195
SaqAI TTAA 2 cut(s) 74, 383
SatI GCNGC 1 cut(s) 89
Sau3AI GATC 2 cut(s) 226, 279
SchI GAGTC 2 cut(s) 136, 152
ScrFI CCNGG 1 cut(s) 207
SduI GDGCHC 1 cut(s) 193
SfaNI GCATC 1 cut(s) 333
SfuI TTCGAA 1 cut(s) 270
SmiMI CAYNNNNRTG 1 cut(s) 186
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
Sse9I AATT 5 cut(s) 71, 92, 104, 413, 450
SsiI CCGC 2 cut(s) 30, 194
SspMI CTAG 1 cut(s) 460
StyD4I CCNGG 1 cut(s) 205
TaiI ACGT 1 cut(s) 115
TaqI TCGA 4 cut(s) 60, 146, 243, 270
TasI AATT 5 cut(s) 71, 92, 104, 413, 450
TfiI GAWTC 1 cut(s) 259
Tru1I TTAA 2 cut(s) 74, 383
Tru9I TTAA 2 cut(s) 74, 383
TseI GCWGC 1 cut(s) 88
TspDTI ATGAA 4 cut(s) 81, 180, 213, 263
XmiI GTMKAC 1 cut(s) 146
XspI CTAG 1 cut(s) 460
Zsp2I ATGCAT 1 cut(s) 397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.