Rmu_co8445989.1_g000001

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8445989.1
OG0000291
Physical Location & Seq
Forward (+)
1 .. 1077
1077 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8445989.1_g000001.1.cds

Sequence Viewer

Length: 553 bp
atgcaacaagccgggacataggtctaatgtgtgtcctgagaggagacaatctgcccttatatatgattatgatgaagaagctggaagaggtgatgaatatgaaggggttgagtttgcggtggaggaatctcctgagaatgttaatattgtgttgcagaggatcttattaactcctaaggaagagggacagtggcgcaatattttcagatcactttgttccattaataacaaagtgtgcaatctaattgtggataatgggagctgcgaaaactttgtagccagaaaattggtggagaatgctaatggctctcgctttcaactctcttccttggggaaccctagcgcgttaggagccgccgagcatggaggcaacgttcgtcactactctcgcccagatgatcgatgttttctcattgttggccttttcacaccactccttccatgggtgattgtgtcctcaattgtgatcggtttctctcttgccttgctttgcaattcggatcttgtgggagcatcgactaccaatgcagtggtgttgccctcttgggtgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 Retrotrans_gag rve zf-CCHC zf-H2C2

Protein Analysis

183

Amino Acids

20.14

Weight (kDa)

5.23

Isoelectric Point (pI)

47.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000291)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00860
fragaria_vesca FvH4_1g23712 FvH4_1g29809 FvH4_1g29810 FvH4_2g02661 FvH4_2g13451 FvH4_2g17921 FvH4_2g17922 FvH4_2g19251 FvH4_2g19252 FvH4_2g28221 FvH4_2g35961 FvH4_3g10372 FvH4_3g12461 FvH4_3g12461 FvH4_3g27861 FvH4_3g34591 FvH4_3g40201 FvH4_3g44612 FvH4_4g08352 FvH4_4g12251 FvH4_4g12742 FvH4_4g13904 FvH4_4g14287 FvH4_4g15243 FvH4_4g24071 FvH4_4g33448 FvH4_5g21912 FvH4_5g39371 FvH4_6g14992 FvH4_6g15221 FvH4_6g20603 FvH4_6g31093 FvH4_6g32372 FvH4_6g33012
malus_domestica MD11G1009100.v1.1 MD13G1145000.v1.1 MD16G1138700.v1.1
prunus_persica Prupe.5G246300_v2.0.a1 Prupe.7G034800_v2.0.a1 Prupe.8G084500_v2.0.a1
pyrus_communis pycom01g18240 pycom04g00330 pycom05g09010 pycom06g01670 pycom06g01690 pycom06g07180 pycom06g11620 pycom10g05720 pycom1134g00040 pycom1134g00060 pycom12486g00010 pycom12555g00230 pycom13g21670 pycom13g23130 pycom13g23140 pycom14g10580
rosa_chinensis RchiOBHm_Chr1g0330691 RchiOBHm_Chr2g0106171 RchiOBHm_Chr2g0134731 RchiOBHm_Chr2g0142791 RchiOBHm_Chr2g0149861 RchiOBHm_Chr3g0452401 RchiOBHm_Chr3g0461881 RchiOBHm_Chr4g0401341 RchiOBHm_Chr5g0075641 RchiOBHm_Chr6g0265961 RchiOBHm_Chr7g0200201 RchiOBHm_Chr7g0237811
rosa_laevigata RLG00000002773
rosa_multiflora Rmu_co8037806.1_g000001 Rmu_co8445989.1_g000001 Rmu_sc0000745.1_g000039 Rmu_sc0004448.1_g000029 Rmu_sc0004488.1_g000002 Rmu_sc0004591.1_g000018 Rmu_sc0005065.1_g000030 Rmu_sc0005150.1_g000005 Rmu_sc0005654.1_g000011 Rmu_sc0006986.1_g000016
rosa_roxburghii Rroxscaffold_164G00436490 Rroxscaffold_175G00432490 Rroxscaffold_1G00059440 Rroxscaffold_1G00064410 Rroxscaffold_2G00100310 Rroxscaffold_2G00128170 Rroxscaffold_3G00239420 Rroxscaffold_3G00264970 Rroxscaffold_3G00271550 Rroxscaffold_4G00300240 Rroxscaffold_5G00385050 Rroxscaffold_6G00399720
rosa_rugosa Rorug02G0252200
rosa_samantha Rh2DG251900 Rh7CG329900
rosa_wichuraiana Rw0G004800 Rw1G000850 Rw1G022350 Rw2G027030 Rw2G027760 Rw2G028410 Rw2G029130 Rw2G029390 Rw2G032490 Rw2G039460 Rw2G047800 Rw2G050340 Rw3G026430 Rw4G018370 Rw4G030750 Rw4G033140 Rw5G011950 Rw5G012010 Rw5G029280 Rw5G040190 Rw5G044570 Rw5G048240 Rw6G000340 Rw6G010140 Rw6G026480 Rw7G033750 Rw7G037250 Rw7G042080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 345
AciI CCGC 2 cut(s) 117, 355
AclI AACGTT 1 cut(s) 373
AclWI GGATC 2 cut(s) 168, 508
AfiI CCNNNNNNNGG 1 cut(s) 443
AgsI TTSAA 1 cut(s) 318
AloI GAACNNNNNNTCC 2 cut(s) 358, 390
AluBI AGCT 2 cut(s) 81, 262
AluI AGCT 2 cut(s) 81, 262
Alw26I GTCTC 1 cut(s) 38
AlwI GGATC 2 cut(s) 168, 508
AoxI GGCC 1 cut(s) 419
ApeKI GCWGC 1 cut(s) 262
AseI ATTAAT 1 cut(s) 223
AspLEI GCGC 2 cut(s) 196, 345
AsuC2I CCSGG 1 cut(s) 13
AsuHPI GGTGA 2 cut(s) 102, 458
AxyI CCTNAGG 1 cut(s) 175
BbvI GCAGC 1 cut(s) 249
BcnI CCSGG 1 cut(s) 13
BcoDI GTCTC 1 cut(s) 38
BfaI CTAG 1 cut(s) 340
BisI GCNGC 2 cut(s) 263, 355
BlsI GCNGC 2 cut(s) 264, 356
Bme1390I CCNGG 1 cut(s) 13
BmiI GGNNCC 2 cut(s) 336, 353
BmrFI CCNGG 1 cut(s) 13
BmsI GCATC 1 cut(s) 522
BoxI GACNNNNGTC 1 cut(s) 20
BpuMI CCSGG 1 cut(s) 13
Bsa29I ATCGAT 1 cut(s) 401
BsaJI CCNNGG 2 cut(s) 328, 441
BsaXI ACNNNNNCTCC 2 cut(s) 358, 388
Bsc4I CCNNNNNNNGG 1 cut(s) 443
Bse21I CCTNAGG 1 cut(s) 175
BseCI ATCGAT 1 cut(s) 401
BseDI CCNNGG 2 cut(s) 328, 441
BseLI CCNNNNNNNGG 1 cut(s) 443
BseMII CTCAG 2 cut(s) 28, 124
BseRI GAGGAG 1 cut(s) 56
BseXI GCAGC 1 cut(s) 249
Bsh1236I CGCG 1 cut(s) 345
BshFI GGCC 1 cut(s) 421
BshVI ATCGAT 1 cut(s) 401
BsiSI CCGG 1 cut(s) 12
BslFI GGGAC 2 cut(s) 28, 199
BslI CCNNNNNNNGG 1 cut(s) 443
BsmAI GTCTC 1 cut(s) 38
BsmFI GGGAC 2 cut(s) 28, 199
BsmI GAATGC 1 cut(s) 302
BsnI GGCC 1 cut(s) 421
Bsp143I GATC 5 cut(s) 160, 207, 398, 466, 500
Bsp19I CCATGG 1 cut(s) 441
BspACI CCGC 2 cut(s) 117, 355
BspANI GGCC 1 cut(s) 421
BspCNI CTCAG 2 cut(s) 29, 125
BspDI ATCGAT 1 cut(s) 401
BspFNI CGCG 1 cut(s) 345
BspLI GGNNCC 2 cut(s) 336, 353
BspPI GGATC 2 cut(s) 168, 508
BssECI CCNNGG 2 cut(s) 328, 441
BssMI GATC 5 cut(s) 160, 207, 398, 466, 500
BssT1I CCWWGG 2 cut(s) 328, 441
Bst4CI ACNGT 1 cut(s) 190
Bst6I CTCTTC 3 cut(s) 80, 175, 329
BstDEI CTNAG 3 cut(s) 37, 133, 175
BstDSI CCRYGG 1 cut(s) 441
BstFNI CGCG 1 cut(s) 345
BstHHI GCGC 2 cut(s) 196, 345
BstKTI GATC 5 cut(s) 163, 210, 401, 469, 503
BstMAI GTCTC 1 cut(s) 38
BstMBI GATC 5 cut(s) 160, 207, 398, 466, 500
BstMWI GCNNNNNNNGC 1 cut(s) 351
BstPAI GACNNNNGTC 1 cut(s) 20
BstSCI CCNGG 1 cut(s) 11
BstUI CGCG 1 cut(s) 345
BstV1I GCAGC 1 cut(s) 249
BstX2I RGATCY 2 cut(s) 160, 500
BstXI CCANNNNNNTGG 2 cut(s) 287, 530
BstYI RGATCY 2 cut(s) 160, 500
Bsu15I ATCGAT 1 cut(s) 401
Bsu36I CCTNAGG 1 cut(s) 175
BsuRI GGCC 1 cut(s) 421
BsuTUI ATCGAT 1 cut(s) 401
BtgI CCRYGG 1 cut(s) 441
BtsI GCAGTG 1 cut(s) 535
BtsIMutI CAGTG 2 cut(s) 195, 535
CfoI GCGC 2 cut(s) 196, 345
ClaI ATCGAT 1 cut(s) 401
CviAII CATG 2 cut(s) 363, 442
CviJI RGCY 7 cut(s) 11, 81, 262, 279, 307, 354, 421
CviKI_1 RGCY 7 cut(s) 11, 81, 262, 279, 307, 354, 421
DdeI CTNAG 3 cut(s) 37, 133, 175
DpnI GATC 5 cut(s) 162, 209, 400, 468, 502
DpnII GATC 5 cut(s) 160, 207, 398, 466, 500
Eam1104I CTCTTC 3 cut(s) 80, 175, 329
EarI CTCTTC 3 cut(s) 80, 175, 329
Eco130I CCWWGG 2 cut(s) 328, 441
Eco81I CCTNAGG 1 cut(s) 175
EcoT14I CCWWGG 2 cut(s) 328, 441
ErhI CCWWGG 2 cut(s) 328, 441
FaeI CATG 2 cut(s) 366, 445
FaiI YATR 8 cut(s) 19, 60, 62, 64, 70, 100, 364, 443
FaqI GGGAC 2 cut(s) 28, 199
FatI CATG 2 cut(s) 362, 441
Fnu4HI GCNGC 2 cut(s) 263, 355
Fsp4HI GCNGC 2 cut(s) 263, 355
FspBI CTAG 1 cut(s) 340
GlaI GCGC 2 cut(s) 195, 344
GluI GCNGC 2 cut(s) 263, 355
HaeIII GGCC 1 cut(s) 421
HapII CCGG 1 cut(s) 12
HhaI GCGC 2 cut(s) 196, 345
Hin1II CATG 2 cut(s) 366, 445
Hin6I GCGC 2 cut(s) 194, 343
HinP1I GCGC 2 cut(s) 194, 343
HinfI GANTC 1 cut(s) 126
HpaII CCGG 1 cut(s) 12
HphI GGTGA 2 cut(s) 102, 458
Hpy188I TCNGA 2 cut(s) 207, 500
Hpy188III TCNNGA 2 cut(s) 36, 132
HpyAV CCTTC 2 cut(s) 96, 447
HpyCH4III ACNGT 1 cut(s) 190
HpyCH4IV ACGT 1 cut(s) 373
HpyCH4V TGCA 5 cut(s) 4, 155, 238, 493, 528
HpyF10VI GCNNNNNNNGC 1 cut(s) 351
HpyF3I CTNAG 3 cut(s) 37, 133, 175
HpySE526I ACGT 1 cut(s) 373
Hsp92II CATG 2 cut(s) 366, 445
HspAI GCGC 2 cut(s) 194, 343
Kzo9I GATC 5 cut(s) 160, 207, 398, 466, 500
LmnI GCTCC 3 cut(s) 259, 351, 510
LpnPI CCDG 6 cut(s) 25, 49, 67, 145, 293, 406
Lsp1109I GCAGC 1 cut(s) 249
LweI GCATC 1 cut(s) 522
MaeI CTAG 1 cut(s) 340
MaeII ACGT 1 cut(s) 373
MaeIII GTNAC 1 cut(s) 378
MalI GATC 5 cut(s) 162, 209, 400, 468, 502
MboI GATC 5 cut(s) 160, 207, 398, 466, 500
MboII GAAGA 4 cut(s) 87, 97, 192, 316
MfeI CAATTG 1 cut(s) 460
MflI RGATCY 2 cut(s) 160, 500
MluCI AATT 4 cut(s) 244, 285, 460, 494
MnlI CCTC 8 cut(s) 34, 81, 116, 151, 176, 360, 467, 551
MseI TTAA 3 cut(s) 142, 168, 223
MspI CCGG 1 cut(s) 12
MspR9I CCNGG 1 cut(s) 13
MunI CAATTG 1 cut(s) 460
Mva1269I GAATGC 1 cut(s) 302
MvnI CGCG 1 cut(s) 345
MwoI GCNNNNNNNGC 1 cut(s) 351
NciI CCSGG 1 cut(s) 13
NcoI CCATGG 1 cut(s) 441
NdeII GATC 5 cut(s) 160, 207, 398, 466, 500
NlaIII CATG 2 cut(s) 366, 445
NlaIV GGNNCC 2 cut(s) 336, 353
NmeAIII GCCGAG 1 cut(s) 383
NmuCI GTSAC 1 cut(s) 378
PctI GAATGC 1 cut(s) 302
PfeI GAWTC 1 cut(s) 126
PkrI GCNGC 2 cut(s) 264, 356
PshAI GACNNNNGTC 1 cut(s) 20
PshBI ATTAAT 1 cut(s) 223
Psp1406I AACGTT 1 cut(s) 373
PspN4I GGNNCC 2 cut(s) 336, 353
PsuI RGATCY 2 cut(s) 160, 500
SaqAI TTAA 3 cut(s) 142, 168, 223
SatI GCNGC 2 cut(s) 263, 355
Sau3AI GATC 5 cut(s) 160, 207, 398, 466, 500
ScrFI CCNGG 1 cut(s) 13
SetI ASST 5 cut(s) 24, 83, 92, 264, 376
SfaNI GCATC 1 cut(s) 522
Sse9I AATT 4 cut(s) 244, 285, 460, 494
SsiI CCGC 2 cut(s) 117, 355
SspI AATATT 2 cut(s) 146, 200
SspMI CTAG 1 cut(s) 340
StyD4I CCNGG 1 cut(s) 11
StyI CCWWGG 2 cut(s) 328, 441
TaaI ACNGT 1 cut(s) 190
TaiI ACGT 1 cut(s) 376
TaqI TCGA 2 cut(s) 401, 516
TasI AATT 4 cut(s) 244, 285, 460, 494
TauI GCSGC 1 cut(s) 357
TfiI GAWTC 1 cut(s) 126
Tru1I TTAA 3 cut(s) 142, 168, 223
Tru9I TTAA 3 cut(s) 142, 168, 223
TscAI CASTG 2 cut(s) 195, 535
TseFI GTSAC 1 cut(s) 378
TseI GCWGC 1 cut(s) 262
Tsp45I GTSAC 1 cut(s) 378
TspDTI ATGAA 3 cut(s) 88, 109, 115
TspRI CASTG 2 cut(s) 195, 535
VspI ATTAAT 1 cut(s) 223
XcmI CCANNNNNNNNNTGG 2 cut(s) 287, 439
XspI CTAG 1 cut(s) 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.