FvH4_6g32372
ERF Family

DNA RNA polymerases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000291
Physical Location & Seq
Forward (+)
25423046 .. 25423729
684 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g32372.t1

Sequence Viewer

Length: 684 bp
ATGTACCTAGATTGTGTTCAAGGGGCGAAGACTGTAACAGAGTATACCGCTGAGTTTGTGCATCTTTCTGAGCGCAATGACTTAGGCGAATCTGAAGGGCAGAAGGTTGCTCGGTACATCAATGGGTTGAGACCTTCCATACAAGAGAAGATTGGCTTACAAACTATGTGGTCTGTGACTGAGGCTGCAAGTTTGGCGATAAAGGCGGAGCTGATGGAGAGATCCCTTAGAGTTTCTTTTCAGTTTCCAAGATTCACTAGTCAGAGGAGTACTGAAGCCGGGAGTTCTGTGGGAGATAAAGGGAAAACAGTGACGCAGAATACGGGTGGAATGACCACTAGGGCTTCTAGTGCTGTTAACAAAGAGGGTGGCGTTTCTGGTTTTGGTAGTACTAGCAGGGCAACTCGGGCAGCACCTGTGCAGCGACCTTTTAACCCTTATACAAGGCCTTTCCCAGGTACTTGTTATAGGTGTTTACAGCCTGGTCATAGATCCAACGAGTGTACTGCCCCTCCGAAGGTGGTTAAAGCAGTTCAGGCTTTAGTCGAGGCCTGCGAGGAAGACGAGGCGGAGGAAGGAGGCGATGACTATGAAGGGGCTGAATTTGCAGTGGACGATTCTCTAGAAAAGGTGAACATTGTATTGCAGAGAATTCTGTTGTCTCCTAGGAAGGAGGACGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 Retrotrans_gag rve zf-H2C2

Protein Analysis

228

Amino Acids

24.72

Weight (kDa)

5.43

Isoelectric Point (pI)

50.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000291)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00860
fragaria_vesca FvH4_1g23712 FvH4_1g29809 FvH4_1g29810 FvH4_2g02661 FvH4_2g13451 FvH4_2g17921 FvH4_2g17922 FvH4_2g19251 FvH4_2g19252 FvH4_2g28221 FvH4_2g35961 FvH4_3g10372 FvH4_3g12461 FvH4_3g12461 FvH4_3g27861 FvH4_3g34591 FvH4_3g40201 FvH4_3g44612 FvH4_4g08352 FvH4_4g12251 FvH4_4g12742 FvH4_4g13904 FvH4_4g14287 FvH4_4g15243 FvH4_4g24071 FvH4_4g33448 FvH4_5g21912 FvH4_5g39371 FvH4_6g14992 FvH4_6g15221 FvH4_6g20603 FvH4_6g31093 FvH4_6g32372 FvH4_6g33012
malus_domestica MD11G1009100.v1.1 MD13G1145000.v1.1 MD16G1138700.v1.1
prunus_persica Prupe.5G246300_v2.0.a1 Prupe.7G034800_v2.0.a1 Prupe.8G084500_v2.0.a1
pyrus_communis pycom01g18240 pycom04g00330 pycom05g09010 pycom06g01670 pycom06g01690 pycom06g07180 pycom06g11620 pycom10g05720 pycom1134g00040 pycom1134g00060 pycom12486g00010 pycom12555g00230 pycom13g21670 pycom13g23130 pycom13g23140 pycom14g10580
rosa_chinensis RchiOBHm_Chr1g0330691 RchiOBHm_Chr2g0106171 RchiOBHm_Chr2g0134731 RchiOBHm_Chr2g0142791 RchiOBHm_Chr2g0149861 RchiOBHm_Chr3g0452401 RchiOBHm_Chr3g0461881 RchiOBHm_Chr4g0401341 RchiOBHm_Chr5g0075641 RchiOBHm_Chr6g0265961 RchiOBHm_Chr7g0200201 RchiOBHm_Chr7g0237811
rosa_laevigata RLG00000002773
rosa_multiflora Rmu_co8037806.1_g000001 Rmu_co8445989.1_g000001 Rmu_sc0000745.1_g000039 Rmu_sc0004448.1_g000029 Rmu_sc0004488.1_g000002 Rmu_sc0004591.1_g000018 Rmu_sc0005065.1_g000030 Rmu_sc0005150.1_g000005 Rmu_sc0005654.1_g000011 Rmu_sc0006986.1_g000016
rosa_roxburghii Rroxscaffold_164G00436490 Rroxscaffold_175G00432490 Rroxscaffold_1G00059440 Rroxscaffold_1G00064410 Rroxscaffold_2G00100310 Rroxscaffold_2G00128170 Rroxscaffold_3G00239420 Rroxscaffold_3G00264970 Rroxscaffold_3G00271550 Rroxscaffold_4G00300240 Rroxscaffold_5G00385050 Rroxscaffold_6G00399720
rosa_rugosa Rorug02G0252200
rosa_samantha Rh2DG251900 Rh7CG329900
rosa_wichuraiana Rw0G004800 Rw1G000850 Rw1G022350 Rw2G027030 Rw2G027760 Rw2G028410 Rw2G029130 Rw2G029390 Rw2G032490 Rw2G039460 Rw2G047800 Rw2G050340 Rw3G026430 Rw4G018370 Rw4G030750 Rw4G033140 Rw5G011950 Rw5G012010 Rw5G029280 Rw5G040190 Rw5G044570 Rw5G048240 Rw6G000340 Rw6G010140 Rw6G026480 Rw7G033750 Rw7G037250 Rw7G042080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 44
AciI CCGC 3 cut(s) 48, 206, 569
AclWI GGATC 2 cut(s) 216, 486
AcsI RAATTY 2 cut(s) 602, 651
AcuI CTGAAG 2 cut(s) 114, 294
AfaI GTAC 6 cut(s) 5, 116, 271, 391, 460, 505
AfiI CCNNNNNNNGG 2 cut(s) 455, 517
AgsI TTSAA 1 cut(s) 20
AhlI ACTAGT 1 cut(s) 257
AjnI CCWGG 2 cut(s) 454, 481
AluBI AGCT 1 cut(s) 211
AluI AGCT 1 cut(s) 211
Alw26I GTCTC 2 cut(s) 124, 666
AlwI GGATC 2 cut(s) 216, 486
AlwNI CAGNNNCTG 1 cut(s) 416
Ama87I CYCGRG 1 cut(s) 405
AoxI GGCC 2 cut(s) 446, 549
ApeKI GCWGC 3 cut(s) 185, 410, 421
ApoI RAATTY 2 cut(s) 602, 651
AspA2I CCTAGG 1 cut(s) 665
AspLEI GCGC 1 cut(s) 75
AsuC2I CCSGG 1 cut(s) 280
AsuHPI GGTGA 1 cut(s) 643
AvaI CYCGRG 1 cut(s) 405
AvrII CCTAGG 1 cut(s) 665
BbsI GAAGAC 2 cut(s) 35, 567
BbvI GCAGC 3 cut(s) 172, 422, 433
BccI CCATC 1 cut(s) 208
BcgI CGANNNNNNTGC 2 cut(s) 488, 522
BciT130I CCWGG 2 cut(s) 456, 483
BcnI CCSGG 1 cut(s) 280
BcoDI GTCTC 2 cut(s) 124, 666
BcuI ACTAGT 1 cut(s) 257
BfaI CTAG 7 cut(s) 8, 258, 339, 348, 393, 623, 666
BisI GCNGC 3 cut(s) 186, 411, 422
BlnI CCTAGG 1 cut(s) 665
BlsI GCNGC 3 cut(s) 187, 412, 423
BmcAI AGTACT 2 cut(s) 271, 391
Bme1390I CCNGG 3 cut(s) 280, 456, 483
BmeT110I CYCGRG 1 cut(s) 405
BmrFI CCNGG 3 cut(s) 280, 456, 483
BmsI GCATC 1 cut(s) 70
BpiI GAAGAC 2 cut(s) 35, 567
BpuMI CCSGG 1 cut(s) 280
BsaI GGTCTC 1 cut(s) 124
BsaJI CCNNGG 2 cut(s) 454, 665
BsaXI ACNNNNNCTCC 2 cut(s) 496, 526
Bsc4I CCNNNNNNNGG 2 cut(s) 455, 517
Bse3DI GCAATG 1 cut(s) 82
BseBI CCWGG 2 cut(s) 456, 483
BseDI CCNNGG 2 cut(s) 454, 665
BseLI CCNNNNNNNGG 2 cut(s) 455, 517
BseMI GCAATG 1 cut(s) 82
BseMII CTCAG 3 cut(s) 42, 60, 171
BseRI GAGGAG 1 cut(s) 280
BseXI GCAGC 3 cut(s) 172, 422, 433
BsgI GTGCAG 1 cut(s) 440
BshFI GGCC 2 cut(s) 448, 551
BsiHKCI CYCGRG 1 cut(s) 405
BsiSI CCGG 1 cut(s) 279
BslI CCNNNNNNNGG 2 cut(s) 455, 517
BsmAI GTCTC 2 cut(s) 124, 666
BsnI GGCC 2 cut(s) 448, 551
Bso31I GGTCTC 1 cut(s) 124
BsoBI CYCGRG 1 cut(s) 405
Bsp143I GATC 2 cut(s) 221, 491
BspACI CCGC 3 cut(s) 48, 206, 569
BspANI GGCC 2 cut(s) 448, 551
BspCNI CTCAG 3 cut(s) 43, 61, 172
BspPI GGATC 2 cut(s) 216, 486
BspTNI GGTCTC 1 cut(s) 124
BsrDI GCAATG 1 cut(s) 82
BssECI CCNNGG 2 cut(s) 454, 665
BssMI GATC 2 cut(s) 221, 491
BssNAI GTATAC 1 cut(s) 45
BssT1I CCWWGG 1 cut(s) 665
Bst1107I GTATAC 1 cut(s) 45
Bst2UI CCWGG 2 cut(s) 456, 483
Bst4CI ACNGT 3 cut(s) 34, 310, 680
BstC8I GCNNGC 1 cut(s) 553
BstDEI CTNAG 5 cut(s) 51, 69, 82, 180, 227
BstENI CCTNNNNNAGG 1 cut(s) 453
BstHHI GCGC 1 cut(s) 75
BstKTI GATC 2 cut(s) 224, 494
BstMAI GTCTC 2 cut(s) 124, 666
BstMBI GATC 2 cut(s) 221, 491
BstMWI GCNNNNNNNGC 6 cut(s) 194, 203, 350, 407, 536, 605
BstNI CCWGG 2 cut(s) 456, 483
BstSCI CCNGG 3 cut(s) 278, 454, 481
BstV1I GCAGC 3 cut(s) 172, 422, 433
BstV2I GAAGAC 2 cut(s) 35, 567
BstX2I RGATCY 2 cut(s) 221, 491
BstYI RGATCY 2 cut(s) 221, 491
BstZ17I GTATAC 1 cut(s) 45
BsuRI GGCC 2 cut(s) 448, 551
BtgZI GCGATG 1 cut(s) 597
BtsI GCAGTG 1 cut(s) 615
BtsIMutI CAGTG 2 cut(s) 315, 615
Cac8I GCNNGC 1 cut(s) 553
CaiI CAGNNNCTG 1 cut(s) 416
CfoI GCGC 1 cut(s) 75
CseI GACGC 1 cut(s) 322
Csp6I GTAC 6 cut(s) 4, 115, 270, 390, 459, 504
CspCI CAANNNNNGTGG 4 cut(s) 149, 184, 349, 384
CviQI GTAC 6 cut(s) 4, 115, 270, 390, 459, 504
DdeI CTNAG 5 cut(s) 51, 69, 82, 180, 227
DpnI GATC 2 cut(s) 223, 493
DpnII GATC 2 cut(s) 221, 491
EciI GGCGGA 2 cut(s) 221, 584
Eco130I CCWWGG 1 cut(s) 665
Eco147I AGGCCT 2 cut(s) 448, 551
Eco31I GGTCTC 1 cut(s) 124
Eco57I CTGAAG 2 cut(s) 114, 294
Eco88I CYCGRG 1 cut(s) 405
EcoNI CCTNNNNNAGG 1 cut(s) 453
EcoRI GAATTC 1 cut(s) 651
EcoRII CCWGG 2 cut(s) 454, 481
EcoT14I CCWWGG 1 cut(s) 665
ErhI CCWWGG 1 cut(s) 665
FaiI YATR 7 cut(s) 45, 140, 167, 441, 468, 489, 591
FalI AAGNNNNNCTT 2 cut(s) 140, 172
FblI GTMKAC 1 cut(s) 44
Fnu4HI GCNGC 3 cut(s) 186, 411, 422
Fsp4HI GCNGC 3 cut(s) 186, 411, 422
FspBI CTAG 7 cut(s) 8, 258, 339, 348, 393, 623, 666
GlaI GCGC 1 cut(s) 74
GluI GCNGC 3 cut(s) 186, 411, 422
HaeIII GGCC 2 cut(s) 448, 551
HapII CCGG 1 cut(s) 279
HgaI GACGC 1 cut(s) 322
HhaI GCGC 1 cut(s) 75
Hin6I GCGC 1 cut(s) 73
HinP1I GCGC 1 cut(s) 73
HincII GTYRAC 1 cut(s) 358
HindII GTYRAC 1 cut(s) 358
HinfI GANTC 3 cut(s) 89, 252, 617
HpaI GTTAAC 1 cut(s) 358
HpaII CCGG 1 cut(s) 279
HphI GGTGA 1 cut(s) 643
Hpy166II GTNNAC 6 cut(s) 45, 358, 476, 504, 613, 634
Hpy188I TCNGA 4 cut(s) 70, 94, 264, 516
Hpy188III TCNNGA 1 cut(s) 623
Hpy8I GTNNAC 6 cut(s) 45, 358, 476, 504, 613, 634
HpyAV CCTTC 7 cut(s) 89, 97, 144, 511, 569, 587, 664
HpyCH4III ACNGT 3 cut(s) 34, 310, 680
HpyCH4V TGCA 5 cut(s) 61, 188, 421, 608, 646
HpyF10VI GCNNNNNNNGC 6 cut(s) 194, 203, 350, 407, 536, 605
HpyF3I CTNAG 5 cut(s) 51, 69, 82, 180, 227
HspAI GCGC 1 cut(s) 73
KspAI GTTAAC 1 cut(s) 358
Kzo9I GATC 2 cut(s) 221, 491
LmnI GCTCC 1 cut(s) 208
Lsp1109I GCAGC 3 cut(s) 172, 422, 433
LweI GCATC 1 cut(s) 70
MaeI CTAG 7 cut(s) 8, 258, 339, 348, 393, 623, 666
MaeIII GTNAC 3 cut(s) 34, 175, 310
MalI GATC 2 cut(s) 223, 493
MboI GATC 2 cut(s) 221, 491
MboII GAAGA 3 cut(s) 40, 160, 572
MflI RGATCY 2 cut(s) 221, 491
MluCI AATT 2 cut(s) 602, 651
MmeI TCCRAC 1 cut(s) 519
MseI TTAA 4 cut(s) 357, 432, 525, 682
MspA1I CMGCKG 1 cut(s) 50
MspI CCGG 1 cut(s) 279
MspR9I CCNGG 3 cut(s) 280, 456, 483
MvaI CCWGG 2 cut(s) 456, 483
MwoI GCNNNNNNNGC 6 cut(s) 194, 203, 350, 407, 536, 605
NciI CCSGG 1 cut(s) 280
NdeII GATC 2 cut(s) 221, 491
NmuCI GTSAC 2 cut(s) 175, 310
PceI AGGCCT 2 cut(s) 448, 551
PcsI WCGNNNNNNNCGW 1 cut(s) 552
PfeI GAWTC 3 cut(s) 89, 252, 617
PkrI GCNGC 3 cut(s) 187, 412, 423
Psp6I CCWGG 2 cut(s) 454, 481
PspGI CCWGG 2 cut(s) 454, 481
PstNI CAGNNNCTG 1 cut(s) 416
PsuI RGATCY 2 cut(s) 221, 491
RsaI GTAC 6 cut(s) 5, 116, 271, 391, 460, 505
RsaNI GTAC 6 cut(s) 4, 115, 270, 390, 459, 504
SaqAI TTAA 4 cut(s) 357, 432, 525, 682
SatI GCNGC 3 cut(s) 186, 411, 422
Sau3AI GATC 2 cut(s) 221, 491
ScaI AGTACT 2 cut(s) 271, 391
ScrFI CCNGG 3 cut(s) 280, 456, 483
SfaNI GCATC 1 cut(s) 70
SpeI ACTAGT 1 cut(s) 257
Sse9I AATT 2 cut(s) 602, 651
SseBI AGGCCT 2 cut(s) 448, 551
SsiI CCGC 3 cut(s) 48, 206, 569
SspMI CTAG 7 cut(s) 8, 258, 339, 348, 393, 623, 666
StuI AGGCCT 2 cut(s) 448, 551
StyD4I CCNGG 3 cut(s) 278, 454, 481
StyI CCWWGG 1 cut(s) 665
TaaI ACNGT 3 cut(s) 34, 310, 680
TaqI TCGA 1 cut(s) 546
TasI AATT 2 cut(s) 602, 651
TatI WGTACW 3 cut(s) 269, 389, 503
TfiI GAWTC 3 cut(s) 89, 252, 617
Tru1I TTAA 4 cut(s) 357, 432, 525, 682
Tru9I TTAA 4 cut(s) 357, 432, 525, 682
TscAI CASTG 2 cut(s) 315, 615
TseFI GTSAC 2 cut(s) 175, 310
TseI GCWGC 3 cut(s) 185, 410, 421
Tsp45I GTSAC 2 cut(s) 175, 310
TspDTI ATGAA 1 cut(s) 606
TspRI CASTG 2 cut(s) 315, 615
XagI CCTNNNNNAGG 1 cut(s) 453
XapI RAATTY 2 cut(s) 602, 651
XbaI TCTAGA 1 cut(s) 622
XmaJI CCTAGG 1 cut(s) 665
XmiI GTMKAC 1 cut(s) 44
XspI CTAG 7 cut(s) 8, 258, 339, 348, 393, 623, 666
ZrmI AGTACT 2 cut(s) 271, 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.