FvH4_6g31093

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000291
Physical Location & Seq
Reverse (-)
24293083 .. 24293370
288 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g31093.t1

Sequence Viewer

Length: 288 bp
ATGCGAGACGATGTGATGGAATACACCAGGACGTGTCTCATCTGCCAACAAGACAAGGTAGAGCGACAGAAGACAGCGGGGTTGCTGGAGCCGCTGGCAACACCCACTCGTCCGTGGGAGAGTGTCTCCCTCGATTTCATTACCAATCTCCCGAAGGTTGGGGAAATATCTGGAATCCTGGTCGTGGTGGACAGGTTCTCGAAGTATGCAACATTTGTTCCAACATCGAAGCATTGCTCGACAGAAGACACAGCGAGTCTCTTCTTCAAACATGTGGTGAAGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease_2 Chromo RVP_2 RVT_1 Retrotrans_gag gag-asp_proteas rve

Protein Analysis

96

Amino Acids

10.83

Weight (kDa)

6.71

Isoelectric Point (pI)

23.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000291)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00860
fragaria_vesca FvH4_1g23712 FvH4_1g29809 FvH4_1g29810 FvH4_2g02661 FvH4_2g13451 FvH4_2g17921 FvH4_2g17922 FvH4_2g19251 FvH4_2g19252 FvH4_2g28221 FvH4_2g35961 FvH4_3g10372 FvH4_3g12461 FvH4_3g12461 FvH4_3g27861 FvH4_3g34591 FvH4_3g40201 FvH4_3g44612 FvH4_4g08352 FvH4_4g12251 FvH4_4g12742 FvH4_4g13904 FvH4_4g14287 FvH4_4g15243 FvH4_4g24071 FvH4_4g33448 FvH4_5g21912 FvH4_5g39371 FvH4_6g14992 FvH4_6g15221 FvH4_6g20603 FvH4_6g31093 FvH4_6g32372 FvH4_6g33012
malus_domestica MD11G1009100.v1.1 MD13G1145000.v1.1 MD16G1138700.v1.1
prunus_persica Prupe.5G246300_v2.0.a1 Prupe.7G034800_v2.0.a1 Prupe.8G084500_v2.0.a1
pyrus_communis pycom01g18240 pycom04g00330 pycom05g09010 pycom06g01670 pycom06g01690 pycom06g07180 pycom06g11620 pycom10g05720 pycom1134g00040 pycom1134g00060 pycom12486g00010 pycom12555g00230 pycom13g21670 pycom13g23130 pycom13g23140 pycom14g10580
rosa_chinensis RchiOBHm_Chr1g0330691 RchiOBHm_Chr2g0106171 RchiOBHm_Chr2g0134731 RchiOBHm_Chr2g0142791 RchiOBHm_Chr2g0149861 RchiOBHm_Chr3g0452401 RchiOBHm_Chr3g0461881 RchiOBHm_Chr4g0401341 RchiOBHm_Chr5g0075641 RchiOBHm_Chr6g0265961 RchiOBHm_Chr7g0200201 RchiOBHm_Chr7g0237811
rosa_laevigata RLG00000002773
rosa_multiflora Rmu_co8037806.1_g000001 Rmu_co8445989.1_g000001 Rmu_sc0000745.1_g000039 Rmu_sc0004448.1_g000029 Rmu_sc0004488.1_g000002 Rmu_sc0004591.1_g000018 Rmu_sc0005065.1_g000030 Rmu_sc0005150.1_g000005 Rmu_sc0005654.1_g000011 Rmu_sc0006986.1_g000016
rosa_roxburghii Rroxscaffold_164G00436490 Rroxscaffold_175G00432490 Rroxscaffold_1G00059440 Rroxscaffold_1G00064410 Rroxscaffold_2G00100310 Rroxscaffold_2G00128170 Rroxscaffold_3G00239420 Rroxscaffold_3G00264970 Rroxscaffold_3G00271550 Rroxscaffold_4G00300240 Rroxscaffold_5G00385050 Rroxscaffold_6G00399720
rosa_rugosa Rorug02G0252200
rosa_samantha Rh2DG251900 Rh7CG329900
rosa_wichuraiana Rw0G004800 Rw1G000850 Rw1G022350 Rw2G027030 Rw2G027760 Rw2G028410 Rw2G029130 Rw2G029390 Rw2G032490 Rw2G039460 Rw2G047800 Rw2G050340 Rw3G026430 Rw4G018370 Rw4G030750 Rw4G033140 Rw5G011950 Rw5G012010 Rw5G029280 Rw5G040190 Rw5G044570 Rw5G048240 Rw6G000340 Rw6G010140 Rw6G026480 Rw7G033750 Rw7G037250 Rw7G042080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 77, 92
AfiI CCNNNNNNNGG 2 cut(s) 158, 184
AflIII ACRYGT 2 cut(s) 32, 271
AgsI TTSAA 1 cut(s) 268
AjiI CACGTC 1 cut(s) 33
AjnI CCWGG 2 cut(s) 26, 177
Alw26I GTCTC 3 cut(s) 41, 130, 263
BbsI GAAGAC 2 cut(s) 77, 252
BccI CCATC 1 cut(s) 10
BciT130I CCWGG 2 cut(s) 28, 179
BcoDI GTCTC 3 cut(s) 41, 130, 263
BisI GCNGC 1 cut(s) 92
BlsI GCNGC 1 cut(s) 93
Bme1390I CCNGG 2 cut(s) 28, 179
BmgBI CACGTC 1 cut(s) 33
BmiI GGNNCC 1 cut(s) 90
BmrFI CCNGG 2 cut(s) 28, 179
BpiI GAAGAC 2 cut(s) 77, 252
BplI GAGNNNNNCTC 2 cut(s) 110, 142
BpmI CTGGAG 1 cut(s) 107
BsaJI CCNNGG 1 cut(s) 113
Bsc4I CCNNNNNNNGG 2 cut(s) 158, 184
Bse3DI GCAATG 1 cut(s) 232
BseBI CCWGG 2 cut(s) 28, 179
BseDI CCNNGG 1 cut(s) 113
BseLI CCNNNNNNNGG 2 cut(s) 158, 184
BseMI GCAATG 1 cut(s) 232
BslI CCNNNNNNNGG 2 cut(s) 158, 184
BsmAI GTCTC 3 cut(s) 41, 130, 263
BspACI CCGC 2 cut(s) 77, 92
BspLI GGNNCC 1 cut(s) 90
BsrDI GCAATG 1 cut(s) 232
BssECI CCNNGG 1 cut(s) 113
Bst2UI CCWGG 2 cut(s) 28, 179
Bst6I CTCTTC 1 cut(s) 266
BstC8I GCNNGC 1 cut(s) 96
BstDSI CCRYGG 1 cut(s) 113
BstMAI GTCTC 3 cut(s) 41, 130, 263
BstMWI GCNNNNNNNGC 1 cut(s) 91
BstNI CCWGG 2 cut(s) 28, 179
BstNSI RCATGY 1 cut(s) 275
BstSCI CCNGG 2 cut(s) 26, 177
BstV2I GAAGAC 2 cut(s) 77, 252
BtgI CCRYGG 1 cut(s) 113
BtrI CACGTC 1 cut(s) 33
Cac8I GCNNGC 1 cut(s) 96
CviAII CATG 1 cut(s) 272
CviJI RGCY 1 cut(s) 91
CviKI_1 RGCY 1 cut(s) 91
Eam1104I CTCTTC 1 cut(s) 266
EarI CTCTTC 1 cut(s) 266
EcoRII CCWGG 2 cut(s) 26, 177
FaeI CATG 1 cut(s) 275
FaiI YATR 2 cut(s) 207, 273
FatI CATG 1 cut(s) 271
FauI CCCGC 1 cut(s) 70
Fnu4HI GCNGC 1 cut(s) 92
Fsp4HI GCNGC 1 cut(s) 92
GluI GCNGC 1 cut(s) 92
GsuI CTGGAG 1 cut(s) 107
Hin1II CATG 1 cut(s) 275
HinfI GANTC 2 cut(s) 174, 256
Hpy166II GTNNAC 1 cut(s) 190
Hpy188III TCNNGA 3 cut(s) 151, 171, 199
Hpy8I GTNNAC 1 cut(s) 190
HpyAV CCTTC 1 cut(s) 148
HpyCH4IV ACGT 1 cut(s) 32
HpyCH4V TGCA 1 cut(s) 209
HpyF10VI GCNNNNNNNGC 1 cut(s) 91
HpySE526I ACGT 1 cut(s) 32
Hsp92II CATG 1 cut(s) 275
LmnI GCTCC 1 cut(s) 88
LpnPI CCDG 8 cut(s) 13, 40, 71, 80, 156, 164, 178, 191
MaeII ACGT 1 cut(s) 32
MboII GAAGA 4 cut(s) 82, 253, 256, 257
MlyI GAGTC 1 cut(s) 265
MmeI TCCRAC 1 cut(s) 245
MnlI CCTC 1 cut(s) 140
MspA1I CMGCKG 2 cut(s) 77, 94
MspR9I CCNGG 2 cut(s) 28, 179
MvaI CCWGG 2 cut(s) 28, 179
MwoI GCNNNNNNNGC 1 cut(s) 91
NlaIII CATG 1 cut(s) 275
NlaIV GGNNCC 1 cut(s) 90
NspI RCATGY 1 cut(s) 275
PciI ACATGT 1 cut(s) 271
PfeI GAWTC 1 cut(s) 174
PkrI GCNGC 1 cut(s) 93
PleI GAGTC 1 cut(s) 264
PpsI GAGTC 1 cut(s) 264
PscI ACATGT 1 cut(s) 271
Psp6I CCWGG 2 cut(s) 26, 177
PspGI CCWGG 2 cut(s) 26, 177
PspN4I GGNNCC 1 cut(s) 90
SatI GCNGC 1 cut(s) 92
SchI GAGTC 1 cut(s) 265
ScrFI CCNGG 2 cut(s) 28, 179
SetI ASST 4 cut(s) 35, 60, 159, 197
SsiI CCGC 2 cut(s) 77, 92
StyD4I CCNGG 2 cut(s) 26, 177
TaiI ACGT 1 cut(s) 35
TaqI TCGA 4 cut(s) 132, 200, 227, 239
TauI GCSGC 1 cut(s) 94
TfiI GAWTC 1 cut(s) 174
TspDTI ATGAA 1 cut(s) 127
TspGWI ACGGA 1 cut(s) 102
XceI RCATGY 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.