FvH4_1g29809

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000291
Physical Location & Seq
Reverse (-)
23426671 .. 23428146
1476 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g29809.t1

Sequence Viewer

Length: 1476 bp
ATGGGAAGAATCAAGGAGGGACTATCCCATGACTCTCAAGCCAAAAACTTGGTGGAGCTTGTCAAGAGTGGAACGACAAGGCGATTTTTGCTCGAGGACGAGTTGCTTTACACAACAGGGAAGCGGCTCTATCTTCCGAAATGGGACAACTTGAGGAGGGAGATATTGAAGGAATGCCACGACTCAAAGTGGGCGGGACACCCCGGCACTCATCGCACTTTGGCATTGCTTAGCGACACCTACTATTGGCCACAAATGCGGGATGATGTGGATGCATATGTGAAGACTTGCCTTGTGTGCCAACAAGACAAGGTGGAGCAAAAGCATCCGGGAGAGTTGTTGGAACCCCTTCCCATTCCATCAAGACCGTGGGAAAGTTTAAGTATGGACTTCATCACCAATCTACCCAAGTCCGATGGTTGTGGATCCATCTTCGTTGTGGTAGATCGATTCACCAAGTATGCCACCTTCATCCCGGCACCCGTGGAGTGTACCGTGGAGGTAGCGGCATGCTTATTCCTCAAGCATGTGGTGAAGTATTGGGGAGTTCCAAGGAGCATAGTTAGCGATCGAGATGCTCGGTTCACCGGAAGGTTTTGGAGGGAACTCTTCAAGTTACTTGGGGCAAAGTTAAACTTCTCCACGGCCTTTCATCCGCAAACCGATGGGCAAACGGAGCGCGTGAATGCCTTGTTGGAGCTATACTTAAGGCATTATGTGAGTACCAACCAAAAGGATTGGGCAAAGTTGCTTGATGTCGCCCAATTCTCTTATAACTTACAACGGTCCGAGTCGACCGGAGCAAGTCCGTTCAAGCTAGCAACCGGACAACAACCCTTGACTCCAAGCACATTGGTGACCGGCTACACGGGAAGTAGCCCCGCTGCATATAAAACAGCCAAGGAGTGGCAGCAAGCCAATGAGCTCGCTCGTTCGCAACTAGAGAAGGCTTCAAAGAAGATGAAGAAGTATGCGGACCGGCAAAGGCGACACTTTGAGTTCCAAACAGGTGACTTGGTGTTTGTGAAAGTTATTCCAACACAACACAAGGCGAACAAGGGACTTCACAAGAGTTTGCTACGGAAGTATGAAGGTCCCTTTCCGATCCTCAAGAAGGTAGGCAAAACAGCATATCTAGTGGAACTACCTTCTAACACCAAGCTTCATCCGGTGTTTCATGTAAGTCACTTGAAGCCTTATCATGAAGATGCCGAAGCACCCGAACGAGGTAAGTCCCATCGAGCTCCCGCTTATATGATCACTTCATTTGACAAAGAAGTGGATAGTATTGAAGCCAAGCGCGAGGTGCGGAAGAAGCGGATACCGAGGTATACCGAATACTTTATCAAATGGAAGGGGCTGCCCGCGTCCGAGGCTAGTTGGGAGAAAGAGGAGTCCTTGTGGCAATTCAAGGACAAGATAGCCGAGTTCGAGCAAGAGGAGCTCGCAAGGGCGACGAGGAAGTCGCCGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease_2 Chromo RVP_2 RVT_1 Retrotrans_gag gag-asp_proteas rve

Protein Analysis

492

Amino Acids

56.61

Weight (kDa)

9.38

Isoelectric Point (pI)

42.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Integrase_H2C2 PF17921 50 - 104 1.8e-23 Integrase zinc binding domain
rve PF00665 121 - 219 3.6e-07 Integrase core domain
SH3_Tf2-1 PF24626 337 - 401 2e-17 Tf2-1-like, SH3 domain
Chromo PF00385 426 - 479 1.2e-10 Chromo (CHRromatin Organisation MOdifier) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000291)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00860
fragaria_vesca FvH4_1g23712 FvH4_1g29809 FvH4_1g29810 FvH4_2g02661 FvH4_2g13451 FvH4_2g17921 FvH4_2g17922 FvH4_2g19251 FvH4_2g19252 FvH4_2g28221 FvH4_2g35961 FvH4_3g10372 FvH4_3g12461 FvH4_3g12461 FvH4_3g27861 FvH4_3g34591 FvH4_3g40201 FvH4_3g44612 FvH4_4g08352 FvH4_4g12251 FvH4_4g12742 FvH4_4g13904 FvH4_4g14287 FvH4_4g15243 FvH4_4g24071 FvH4_4g33448 FvH4_5g21912 FvH4_5g39371 FvH4_6g14992 FvH4_6g15221 FvH4_6g20603 FvH4_6g31093 FvH4_6g32372 FvH4_6g33012
malus_domestica MD11G1009100.v1.1 MD13G1145000.v1.1 MD16G1138700.v1.1
prunus_persica Prupe.5G246300_v2.0.a1 Prupe.7G034800_v2.0.a1 Prupe.8G084500_v2.0.a1
pyrus_communis pycom01g18240 pycom04g00330 pycom05g09010 pycom06g01670 pycom06g01690 pycom06g07180 pycom06g11620 pycom10g05720 pycom1134g00040 pycom1134g00060 pycom12486g00010 pycom12555g00230 pycom13g21670 pycom13g23130 pycom13g23140 pycom14g10580
rosa_chinensis RchiOBHm_Chr1g0330691 RchiOBHm_Chr2g0106171 RchiOBHm_Chr2g0134731 RchiOBHm_Chr2g0142791 RchiOBHm_Chr2g0149861 RchiOBHm_Chr3g0452401 RchiOBHm_Chr3g0461881 RchiOBHm_Chr4g0401341 RchiOBHm_Chr5g0075641 RchiOBHm_Chr6g0265961 RchiOBHm_Chr7g0200201 RchiOBHm_Chr7g0237811
rosa_laevigata RLG00000002773
rosa_multiflora Rmu_co8037806.1_g000001 Rmu_co8445989.1_g000001 Rmu_sc0000745.1_g000039 Rmu_sc0004448.1_g000029 Rmu_sc0004488.1_g000002 Rmu_sc0004591.1_g000018 Rmu_sc0005065.1_g000030 Rmu_sc0005150.1_g000005 Rmu_sc0005654.1_g000011 Rmu_sc0006986.1_g000016
rosa_roxburghii Rroxscaffold_164G00436490 Rroxscaffold_175G00432490 Rroxscaffold_1G00059440 Rroxscaffold_1G00064410 Rroxscaffold_2G00100310 Rroxscaffold_2G00128170 Rroxscaffold_3G00239420 Rroxscaffold_3G00264970 Rroxscaffold_3G00271550 Rroxscaffold_4G00300240 Rroxscaffold_5G00385050 Rroxscaffold_6G00399720
rosa_rugosa Rorug02G0252200
rosa_samantha Rh2DG251900 Rh7CG329900
rosa_wichuraiana Rw0G004800 Rw1G000850 Rw1G022350 Rw2G027030 Rw2G027760 Rw2G028410 Rw2G029130 Rw2G029390 Rw2G032490 Rw2G039460 Rw2G047800 Rw2G050340 Rw3G026430 Rw4G018370 Rw4G030750 Rw4G033140 Rw5G011950 Rw5G012010 Rw5G029280 Rw5G040190 Rw5G044570 Rw5G048240 Rw6G000340 Rw6G010140 Rw6G026480 Rw7G033750 Rw7G037250 Rw7G042080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 774
AasI GACNNNNNNGTC 1 cut(s) 1462
AccB1I GGYRCC 1 cut(s) 478
AccB7I CCANNNNNTGG 1 cut(s) 906
AccI GTMKAC 2 cut(s) 794, 1331
AccII CGCG 3 cut(s) 681, 1302, 1367
AclWI GGATC 3 cut(s) 420, 433, 1099
AcoI YGGCCR 1 cut(s) 248
AfaI GTAC 2 cut(s) 493, 724
AfiI CCNNNNNNNGG 4 cut(s) 246, 906, 1114, 1226
AflII CTTAAG 1 cut(s) 706
AgsI TTSAA 7 cut(s) 169, 613, 814, 954, 1192, 1292, 1411
AjuI GAANNNNNNNTTGG 2 cut(s) 677, 709
AleI CACNNNNGTG 1 cut(s) 854
AluBI AGCT 7 cut(s) 58, 700, 817, 925, 1162, 1244, 1444
AluI AGCT 7 cut(s) 58, 700, 817, 925, 1162, 1244, 1444
Alw21I GWGCWC 3 cut(s) 927, 1246, 1446
AlwI GGATC 3 cut(s) 420, 433, 1099
Ama87I CYCGRG 1 cut(s) 92
AoxI GGCC 2 cut(s) 248, 645
ApeKI GCWGC 3 cut(s) 884, 910, 1360
ArsI GACNNNNNNTTYG 2 cut(s) 1004, 1036
Asp700I GAANNNNTTC 1 cut(s) 348
AspLEI GCGC 2 cut(s) 681, 1302
AspS9I GGNCC 3 cut(s) 786, 976, 1094
AsuC2I CCSGG 3 cut(s) 204, 330, 476
AsuHPI GGTGA 6 cut(s) 388, 445, 544, 577, 868, 1022
AsuNHI GCTAGC 1 cut(s) 817
AvaI CYCGRG 1 cut(s) 92
AvaII GGWCC 3 cut(s) 786, 976, 1094
BaeI ACNNNNGTAYC 2 cut(s) 1313, 1346
BalI TGGCCA 1 cut(s) 250
BamHI GGATCC 1 cut(s) 425
BanI GGYRCC 1 cut(s) 478
BanII GRGCYC 3 cut(s) 927, 1246, 1446
BarI GAAGNNNNNNTAC 2 cut(s) 452, 484
BbsI GAAGAC 1 cut(s) 290
Bbv12I GWGCWC 3 cut(s) 927, 1246, 1446
BbvI GCAGC 3 cut(s) 871, 922, 1347
BccI CCATC 5 cut(s) 367, 410, 437, 659, 1245
BceAI ACGGC 1 cut(s) 660
BcgI CGANNNNNNTGC 2 cut(s) 557, 591
BciVI GTATCC 1 cut(s) 1314
BclI TGATCA 1 cut(s) 1257
BcnI CCSGG 3 cut(s) 204, 330, 476
BfaI CTAG 4 cut(s) 818, 941, 1136, 1377
BfrI CTTAAG 1 cut(s) 706
BfuI GTATCC 1 cut(s) 1314
BisI GCNGC 5 cut(s) 125, 507, 885, 911, 1361
BlpI GCTNAGC 1 cut(s) 230
BlsI GCNGC 5 cut(s) 126, 508, 886, 912, 1362
Bme1390I CCNGG 3 cut(s) 204, 330, 476
Bme18I GGWCC 3 cut(s) 786, 976, 1094
BmeT110I CYCGRG 1 cut(s) 92
BmgT120I GGNCC 3 cut(s) 786, 976, 1094
BmiI GGNNCC 4 cut(s) 345, 427, 480, 1096
BmrFI CCNGG 3 cut(s) 204, 330, 476
BmsI GCATC 4 cut(s) 262, 334, 565, 1198
BmtI GCTAGC 1 cut(s) 821
BpiI GAAGAC 1 cut(s) 290
Bpu1102I GCTNAGC 1 cut(s) 230
BpuEI CTTGAG 4 cut(s) 21, 172, 506, 1094
BpuMI CCSGG 3 cut(s) 204, 330, 476
Bsa29I ATCGAT 1 cut(s) 448
BsaJI CCNNGG 9 cut(s) 202, 368, 483, 495, 551, 642, 900, 1325, 1371
BsaWI WCCGGW 4 cut(s) 587, 797, 824, 1168
BsaXI ACNNNNNCTCC 2 cut(s) 1385, 1415
Bsc4I CCNNNNNNNGG 4 cut(s) 246, 906, 1114, 1226
Bse118I RCCGGY 2 cut(s) 860, 978
Bse3DI GCAATG 1 cut(s) 224
BseCI ATCGAT 1 cut(s) 448
BseDI CCNNGG 9 cut(s) 202, 368, 483, 495, 551, 642, 900, 1325, 1371
BseGI GGATG 6 cut(s) 268, 277, 325, 471, 652, 1165
BseLI CCNNNNNNNGG 4 cut(s) 246, 906, 1114, 1226
BseMI GCAATG 1 cut(s) 224
BseRI GAGGAG 3 cut(s) 169, 1406, 1454
BseXI GCAGC 3 cut(s) 871, 922, 1347
Bsh1236I CGCG 3 cut(s) 681, 1302, 1367
Bsh1285I CGRYCG 2 cut(s) 571, 798
BshFI GGCC 2 cut(s) 250, 647
BshNI GGYRCC 1 cut(s) 478
BshVI ATCGAT 1 cut(s) 448
BsiEI CGRYCG 2 cut(s) 571, 798
BsiHKAI GWGCWC 3 cut(s) 927, 1246, 1446
BsiHKCI CYCGRG 1 cut(s) 92
BsiSI CCGG 9 cut(s) 204, 329, 476, 588, 798, 825, 861, 979, 1169
BslFI GGGAC 6 cut(s) 33, 158, 210, 1074, 1080, 1219
BslI CCNNNNNNNGG 4 cut(s) 246, 906, 1114, 1226
BsmFI GGGAC 6 cut(s) 33, 158, 210, 1074, 1080, 1219
BsmI GAATGC 2 cut(s) 179, 691
BsnI GGCC 2 cut(s) 250, 647
BsoBI CYCGRG 1 cut(s) 92
Bsp1286I GDGCHC 3 cut(s) 927, 1246, 1446
Bsp143I GATC 5 cut(s) 425, 445, 568, 1104, 1257
Bsp1720I GCTNAGC 1 cut(s) 230
BspANI GGCC 2 cut(s) 250, 647
BspDI ATCGAT 1 cut(s) 448
BspFNI CGCG 3 cut(s) 681, 1302, 1367
BspHI TCATGA 1 cut(s) 1201
BspLI GGNNCC 4 cut(s) 345, 427, 480, 1096
BspOI GCTAGC 1 cut(s) 821
BspPI GGATC 3 cut(s) 420, 433, 1099
BspT107I GGYRCC 1 cut(s) 478
BspTI CTTAAG 1 cut(s) 706
BsrDI GCAATG 1 cut(s) 224
BsrFI RCCGGY 2 cut(s) 860, 978
BssAI RCCGGY 2 cut(s) 860, 978
BssECI CCNNGG 9 cut(s) 202, 368, 483, 495, 551, 642, 900, 1325, 1371
BssMI GATC 5 cut(s) 425, 445, 568, 1104, 1257
BssNAI GTATAC 1 cut(s) 1332
BssT1I CCWWGG 2 cut(s) 551, 900
Bst1107I GTATAC 1 cut(s) 1332
Bst4CI ACNGT 3 cut(s) 369, 496, 786
Bst6I CTCTTC 1 cut(s) 614
BstAFI CTTAAG 1 cut(s) 706
BstC8I GCNNGC 6 cut(s) 511, 819, 915, 927, 1365, 1446
BstDEI CTNAG 1 cut(s) 230
BstDSI CCRYGG 4 cut(s) 368, 483, 495, 642
BstEII GGTNACC 1 cut(s) 856
BstENI CCTNNNNNAGG 1 cut(s) 1112
BstF5I GGATG 6 cut(s) 268, 277, 325, 471, 652, 1165
BstFNI CGCG 3 cut(s) 681, 1302, 1367
BstHHI GCGC 2 cut(s) 681, 1302
BstKTI GATC 5 cut(s) 428, 448, 571, 1107, 1260
BstMBI GATC 5 cut(s) 425, 445, 568, 1104, 1257
BstMCI CGRYCG 2 cut(s) 571, 798
BstNSI RCATGY 2 cut(s) 513, 530
BstPI GGTNACC 1 cut(s) 856
BstSCI CCNGG 3 cut(s) 202, 328, 474
BstUI CGCG 3 cut(s) 681, 1302, 1367
BstV1I GCAGC 3 cut(s) 871, 922, 1347
BstV2I GAAGAC 1 cut(s) 290
BstX2I RGATCY 1 cut(s) 425
BstXI CCANNNNNNTGG 1 cut(s) 49
BstYI RGATCY 1 cut(s) 425
BstZ17I GTATAC 1 cut(s) 1332
Bsu15I ATCGAT 1 cut(s) 448
BsuI GTATCC 1 cut(s) 1314
BsuRI GGCC 2 cut(s) 250, 647
BsuTUI ATCGAT 1 cut(s) 448
BtgI CCRYGG 4 cut(s) 368, 483, 495, 642
BtgZI GCGATG 1 cut(s) 197
BtsCI GGATG 6 cut(s) 268, 277, 325, 471, 652, 1165
Cac8I GCNNGC 6 cut(s) 511, 819, 915, 927, 1365, 1446
CciI TCATGA 1 cut(s) 1201
CfoI GCGC 2 cut(s) 681, 1302
Cfr10I RCCGGY 2 cut(s) 860, 978
Cfr13I GGNCC 3 cut(s) 786, 976, 1094
ClaI ATCGAT 1 cut(s) 448
CpoI CGGWCCG 2 cut(s) 786, 976
CseI GACGC 1 cut(s) 1356
Csp6I GTAC 2 cut(s) 492, 723
CspI CGGWCCG 2 cut(s) 786, 976
CviAII CATG 5 cut(s) 29, 510, 527, 1178, 1202
CviQI GTAC 2 cut(s) 492, 723
DdeI CTNAG 1 cut(s) 230
DpnI GATC 5 cut(s) 427, 447, 570, 1106, 1259
DpnII GATC 5 cut(s) 425, 445, 568, 1104, 1257
DrdI GACNNNNNNGTC 1 cut(s) 1462
DseDI GACNNNNNNGTC 1 cut(s) 1462
EaeI YGGCCR 1 cut(s) 248
Eam1104I CTCTTC 1 cut(s) 614
EarI CTCTTC 1 cut(s) 614
Ecl136II GAGCTC 3 cut(s) 925, 1244, 1444
Eco130I CCWWGG 2 cut(s) 551, 900
Eco24I GRGCYC 3 cut(s) 927, 1246, 1446
Eco47I GGWCC 3 cut(s) 786, 976, 1094
Eco53kI GAGCTC 3 cut(s) 925, 1244, 1444
Eco88I CYCGRG 1 cut(s) 92
Eco91I GGTNACC 1 cut(s) 856
EcoICRI GAGCTC 3 cut(s) 925, 1244, 1444
EcoNI CCTNNNNNAGG 1 cut(s) 1112
EcoO109I RGGNCCY 1 cut(s) 1094
EcoO65I GGTNACC 1 cut(s) 856
EcoT14I CCWWGG 2 cut(s) 551, 900
EcoT22I ATGCAT 1 cut(s) 277
EcoT38I GRGCYC 3 cut(s) 927, 1246, 1446
ErhI CCWWGG 2 cut(s) 551, 900
FaeI CATG 5 cut(s) 32, 513, 530, 1181, 1205
FalI AAGNNNNNCTT 2 cut(s) 620, 652
FaqI GGGAC 6 cut(s) 33, 158, 210, 1074, 1080, 1219
FatI CATG 5 cut(s) 28, 509, 526, 1177, 1201
FauI CCCGC 5 cut(s) 187, 252, 889, 1255, 1372
FauNDI CATATG 1 cut(s) 277
FbaI TGATCA 1 cut(s) 1257
FblI GTMKAC 2 cut(s) 794, 1331
Fnu4HI GCNGC 5 cut(s) 125, 507, 885, 911, 1361
FokI GGATG 6 cut(s) 275, 284, 312, 458, 639, 1152
FriOI GRGCYC 3 cut(s) 927, 1246, 1446
Fsp4HI GCNGC 5 cut(s) 125, 507, 885, 911, 1361
FspBI CTAG 4 cut(s) 818, 941, 1136, 1377
GlaI GCGC 2 cut(s) 680, 1301
GluI GCNGC 5 cut(s) 125, 507, 885, 911, 1361
HaeIII GGCC 2 cut(s) 250, 647
HapII CCGG 9 cut(s) 204, 329, 476, 588, 798, 825, 861, 979, 1169
HgaI GACGC 1 cut(s) 1356
HhaI GCGC 2 cut(s) 681, 1302
Hin1II CATG 5 cut(s) 32, 513, 530, 1181, 1205
Hin6I GCGC 2 cut(s) 679, 1300
HinP1I GCGC 2 cut(s) 679, 1300
HincII GTYRAC 1 cut(s) 795
HindII GTYRAC 1 cut(s) 795
HindIII AAGCTT 1 cut(s) 1160
HinfI GANTC 7 cut(s) 9, 32, 182, 450, 791, 841, 1394
HpaII CCGG 9 cut(s) 204, 329, 476, 588, 798, 825, 861, 979, 1169
HphI GGTGA 6 cut(s) 388, 445, 544, 577, 868, 1022
Hpy166II GTNNAC 4 cut(s) 492, 585, 795, 1332
Hpy188I TCNGA 5 cut(s) 138, 415, 790, 1104, 1372
Hpy188III TCNNGA 5 cut(s) 64, 363, 572, 1111, 1202
Hpy8I GTNNAC 4 cut(s) 492, 585, 795, 1332
Hpy99I CGWCG 1 cut(s) 1459
HpyAV CCTTC 9 cut(s) 163, 359, 478, 585, 940, 1085, 1108, 1158, 1348
HpyCH4III ACNGT 3 cut(s) 369, 496, 786
HpyCH4V TGCA 2 cut(s) 275, 887
HpyF3I CTNAG 1 cut(s) 230
Hsp92II CATG 5 cut(s) 32, 513, 530, 1181, 1205
HspAI GCGC 2 cut(s) 679, 1300
Ksp22I TGATCA 1 cut(s) 1257
Kzo9I GATC 5 cut(s) 425, 445, 568, 1104, 1257
LmnI GCTCC 8 cut(s) 55, 316, 555, 676, 697, 800, 1249, 1441
Lsp1109I GCAGC 3 cut(s) 871, 922, 1347
LweI GCATC 4 cut(s) 262, 334, 565, 1198
MaeI CTAG 4 cut(s) 818, 941, 1136, 1377
MaeIII GTNAC 4 cut(s) 615, 856, 1010, 1184
MalI GATC 5 cut(s) 427, 447, 570, 1106, 1259
MboI GATC 5 cut(s) 425, 445, 568, 1104, 1257
MboII GAAGA 9 cut(s) 18, 125, 295, 424, 601, 970, 976, 1217, 1324
MflI RGATCY 1 cut(s) 425
MhlI GDGCHC 3 cut(s) 927, 1246, 1446
MlsI TGGCCA 1 cut(s) 250
MluCI AATT 2 cut(s) 764, 1406
MluNI TGGCCA 1 cut(s) 250
MlyI GAGTC 5 cut(s) 26, 176, 800, 835, 1403
MmeI TCCRAC 3 cut(s) 321, 675, 1061
Mox20I TGGCCA 1 cut(s) 250
Mph1103I ATGCAT 1 cut(s) 277
MroXI GAANNNNTTC 1 cut(s) 348
MscI TGGCCA 1 cut(s) 250
MseI TTAA 3 cut(s) 380, 632, 707
MslI CAYNNNNRTG 2 cut(s) 854, 1206
Msp20I TGGCCA 1 cut(s) 250
MspA1I CMGCKG 1 cut(s) 884
MspCI CTTAAG 1 cut(s) 706
MspI CCGG 9 cut(s) 204, 329, 476, 588, 798, 825, 861, 979, 1169
MspR9I CCNGG 3 cut(s) 204, 330, 476
Mva1269I GAATGC 2 cut(s) 179, 691
MvnI CGCG 3 cut(s) 681, 1302, 1367
NciI CCSGG 3 cut(s) 204, 330, 476
NdeI CATATG 1 cut(s) 277
NdeII GATC 5 cut(s) 425, 445, 568, 1104, 1257
NheI GCTAGC 1 cut(s) 817
NlaIII CATG 5 cut(s) 32, 513, 530, 1181, 1205
NlaIV GGNNCC 4 cut(s) 345, 427, 480, 1096
NmeAIII GCCGAG 1 cut(s) 1450
NmuCI GTSAC 3 cut(s) 856, 1010, 1184
NsiI ATGCAT 1 cut(s) 277
NspI RCATGY 2 cut(s) 513, 530
OliI CACNNNNGTG 1 cut(s) 854
PaeI GCATGC 1 cut(s) 513
PaeR7I CTCGAG 1 cut(s) 92
PagI TCATGA 1 cut(s) 1201
PctI GAATGC 2 cut(s) 179, 691
PdmI GAANNNNTTC 1 cut(s) 348
PfeI GAWTC 2 cut(s) 9, 450
PflMI CCANNNNNTGG 1 cut(s) 906
PfoI TCCNGGA 1 cut(s) 328
PkrI GCNGC 5 cut(s) 126, 508, 886, 912, 1362
Ple19I CGATCG 1 cut(s) 571
PleI GAGTC 5 cut(s) 26, 176, 799, 835, 1402
PpsI GAGTC 5 cut(s) 26, 176, 799, 835, 1402
PpuMI RGGWCCY 1 cut(s) 1094
PsiI TTATAA 1 cut(s) 774
Psp124BI GAGCTC 3 cut(s) 927, 1246, 1446
Psp5II RGGWCCY 1 cut(s) 1094
PspEI GGTNACC 1 cut(s) 856
PspN4I GGNNCC 4 cut(s) 345, 427, 480, 1096
PspPI GGNCC 3 cut(s) 786, 976, 1094
PspPPI RGGWCCY 1 cut(s) 1094
PspXI VCTCGAGB 1 cut(s) 92
PsuI RGATCY 1 cut(s) 425
PvuI CGATCG 1 cut(s) 571
RsaI GTAC 2 cut(s) 493, 724
RsaNI GTAC 2 cut(s) 492, 723
RseI CAYNNNNRTG 2 cut(s) 854, 1206
Rsr2I CGGWCCG 2 cut(s) 786, 976
RsrII CGGWCCG 2 cut(s) 786, 976
SacI GAGCTC 3 cut(s) 927, 1246, 1446
SalI GTCGAC 1 cut(s) 793
SaqAI TTAA 3 cut(s) 380, 632, 707
SatI GCNGC 5 cut(s) 125, 507, 885, 911, 1361
Sau3AI GATC 5 cut(s) 425, 445, 568, 1104, 1257
Sau96I GGNCC 3 cut(s) 786, 976, 1094
SchI GAGTC 5 cut(s) 26, 176, 800, 835, 1403
ScrFI CCNGG 3 cut(s) 204, 330, 476
SduI GDGCHC 3 cut(s) 927, 1246, 1446
SfaNI GCATC 4 cut(s) 262, 334, 565, 1198
Sfr274I CTCGAG 1 cut(s) 92
SinI GGWCC 3 cut(s) 786, 976, 1094
SlaI CTCGAG 1 cut(s) 92
SmiMI CAYNNNNRTG 2 cut(s) 854, 1206
SmlI CTYRAG 6 cut(s) 36, 92, 151, 521, 706, 1109
SmoI CTYRAG 6 cut(s) 36, 92, 151, 521, 706, 1109
SphI GCATGC 1 cut(s) 513
Sse9I AATT 2 cut(s) 764, 1406
SspMI CTAG 4 cut(s) 818, 941, 1136, 1377
SstI GAGCTC 3 cut(s) 927, 1246, 1446
StyD4I CCNGG 3 cut(s) 202, 328, 474
StyI CCWWGG 2 cut(s) 551, 900
TaaI ACNGT 3 cut(s) 369, 496, 786
TaqI TCGA 6 cut(s) 93, 448, 571, 794, 1240, 1431
TasI AATT 2 cut(s) 764, 1406
TauI GCSGC 2 cut(s) 127, 509
TfiI GAWTC 2 cut(s) 9, 450
Tru1I TTAA 3 cut(s) 380, 632, 707
Tru9I TTAA 3 cut(s) 380, 632, 707
TseFI GTSAC 3 cut(s) 856, 1010, 1184
TseI GCWGC 3 cut(s) 884, 910, 1360
Tsp45I GTSAC 3 cut(s) 856, 1010, 1184
TspDTI ATGAA 9 cut(s) 382, 460, 641, 977, 1104, 1154, 1166, 1218, 1254
TspGWI ACGGA 3 cut(s) 689, 798, 1096
Van91I CCANNNNNTGG 1 cut(s) 906
Vha464I CTTAAG 1 cut(s) 706
VpaK11BI GGWCC 3 cut(s) 786, 976, 1094
XagI CCTNNNNNAGG 1 cut(s) 1112
XceI RCATGY 2 cut(s) 513, 530
XcmI CCANNNNNNNNNTGG 3 cut(s) 49, 366, 436
XhoI CTCGAG 1 cut(s) 92
XmiI GTMKAC 2 cut(s) 794, 1331
XmnI GAANNNNTTC 1 cut(s) 348
XspI CTAG 4 cut(s) 818, 941, 1136, 1377
Zsp2I ATGCAT 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.