Rroxscaffold_164G00436490
ERF Family

DNA RNA polymerases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000164
OG0000291
Physical Location & Seq
Forward (+)
384168 .. 388682
4515 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_164G00436490.1

Sequence Viewer

Length: 372 bp
ATGTTAGGGAAGTTTGAAGAGTTGATTTCGGATGAGTTGCCCAACGAGTTACCACCTATGAGGGACATTCAGCATCAAATTGATTTGGTGCCTGGAGCAAGTTTGCCAAAACTGCCCCATTACCGAATGAGTTCCAAGGAGAATGAGATTTTGAGGGAGCAGATTGAAAACTTATTGAAAAAAGGGTTCATTCGTGAAAGTATGAGTCCTTGTGTAGTTTCGGTCCTCCTTGTTCCTAAGAAGGGTAATCAATGGCGGATGTGTGTTGATAGTAGAGCTATAAATAAGATCACCGTGAAGTACGGGTTTCCTATTCCTCATTTGGAGGACATGCTTGATGAGTGGAGGGTTCCAAAGTGTTTACCAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 Retrotrans_gag rve zf-H2C2

Protein Analysis

123

Amino Acids

14.29

Weight (kDa)

7.73

Isoelectric Point (pI)

48.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000291)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00860
fragaria_vesca FvH4_1g23712 FvH4_1g29809 FvH4_1g29810 FvH4_2g02661 FvH4_2g13451 FvH4_2g17921 FvH4_2g17922 FvH4_2g19251 FvH4_2g19252 FvH4_2g28221 FvH4_2g35961 FvH4_3g10372 FvH4_3g12461 FvH4_3g12461 FvH4_3g27861 FvH4_3g34591 FvH4_3g40201 FvH4_3g44612 FvH4_4g08352 FvH4_4g12251 FvH4_4g12742 FvH4_4g13904 FvH4_4g14287 FvH4_4g15243 FvH4_4g24071 FvH4_4g33448 FvH4_5g21912 FvH4_5g39371 FvH4_6g14992 FvH4_6g15221 FvH4_6g20603 FvH4_6g31093 FvH4_6g32372 FvH4_6g33012
malus_domestica MD11G1009100.v1.1 MD13G1145000.v1.1 MD16G1138700.v1.1
prunus_persica Prupe.5G246300_v2.0.a1 Prupe.7G034800_v2.0.a1 Prupe.8G084500_v2.0.a1
pyrus_communis pycom01g18240 pycom04g00330 pycom05g09010 pycom06g01670 pycom06g01690 pycom06g07180 pycom06g11620 pycom10g05720 pycom1134g00040 pycom1134g00060 pycom12486g00010 pycom12555g00230 pycom13g21670 pycom13g23130 pycom13g23140 pycom14g10580
rosa_chinensis RchiOBHm_Chr1g0330691 RchiOBHm_Chr2g0106171 RchiOBHm_Chr2g0134731 RchiOBHm_Chr2g0142791 RchiOBHm_Chr2g0149861 RchiOBHm_Chr3g0452401 RchiOBHm_Chr3g0461881 RchiOBHm_Chr4g0401341 RchiOBHm_Chr5g0075641 RchiOBHm_Chr6g0265961 RchiOBHm_Chr7g0200201 RchiOBHm_Chr7g0237811
rosa_laevigata RLG00000002773
rosa_multiflora Rmu_co8037806.1_g000001 Rmu_co8445989.1_g000001 Rmu_sc0000745.1_g000039 Rmu_sc0004448.1_g000029 Rmu_sc0004488.1_g000002 Rmu_sc0004591.1_g000018 Rmu_sc0005065.1_g000030 Rmu_sc0005150.1_g000005 Rmu_sc0005654.1_g000011 Rmu_sc0006986.1_g000016
rosa_roxburghii Rroxscaffold_164G00436490 Rroxscaffold_175G00432490 Rroxscaffold_1G00059440 Rroxscaffold_1G00064410 Rroxscaffold_2G00100310 Rroxscaffold_2G00128170 Rroxscaffold_3G00239420 Rroxscaffold_3G00264970 Rroxscaffold_3G00271550 Rroxscaffold_4G00300240 Rroxscaffold_5G00385050 Rroxscaffold_6G00399720
rosa_rugosa Rorug02G0252200
rosa_samantha Rh2DG251900 Rh7CG329900
rosa_wichuraiana Rw0G004800 Rw1G000850 Rw1G022350 Rw2G027030 Rw2G027760 Rw2G028410 Rw2G029130 Rw2G029390 Rw2G032490 Rw2G039460 Rw2G047800 Rw2G050340 Rw3G026430 Rw4G018370 Rw4G030750 Rw4G033140 Rw5G011950 Rw5G012010 Rw5G029280 Rw5G040190 Rw5G044570 Rw5G048240 Rw6G000340 Rw6G010140 Rw6G026480 Rw7G033750 Rw7G037250 Rw7G042080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 88
AciI CCGC 1 cut(s) 256
AfaI GTAC 1 cut(s) 302
AfiI CCNNNNNNNGG 1 cut(s) 242
AgsI TTSAA 3 cut(s) 17, 167, 178
AjnI CCWGG 1 cut(s) 91
AluBI AGCT 1 cut(s) 278
AluI AGCT 1 cut(s) 278
Asp700I GAANNNNTTC 1 cut(s) 130
AspS9I GGNCC 1 cut(s) 223
AsuHPI GGTGA 1 cut(s) 283
AvaII GGWCC 1 cut(s) 223
BanI GGYRCC 1 cut(s) 88
BciT130I CCWGG 1 cut(s) 93
Bme1390I CCNGG 1 cut(s) 93
Bme18I GGWCC 1 cut(s) 223
BmgT120I GGNCC 1 cut(s) 223
BmiI GGNNCC 2 cut(s) 90, 351
BmrFI CCNGG 1 cut(s) 93
BmsI GCATC 1 cut(s) 82
BpmI CTGGAG 1 cut(s) 114
BsaJI CCNNGG 1 cut(s) 135
Bsc4I CCNNNNNNNGG 1 cut(s) 242
BseBI CCWGG 1 cut(s) 93
BseDI CCNNGG 1 cut(s) 135
BseGI GGATG 2 cut(s) 37, 264
BseLI CCNNNNNNNGG 1 cut(s) 242
BshNI GGYRCC 1 cut(s) 88
BslFI GGGAC 1 cut(s) 77
BslI CCNNNNNNNGG 1 cut(s) 242
BsmFI GGGAC 1 cut(s) 77
Bsp143I GATC 1 cut(s) 288
BspACI CCGC 1 cut(s) 256
BspLI GGNNCC 2 cut(s) 90, 351
BspT107I GGYRCC 1 cut(s) 88
BssECI CCNNGG 1 cut(s) 135
BssMI GATC 1 cut(s) 288
BssT1I CCWWGG 1 cut(s) 135
Bst2UI CCWGG 1 cut(s) 93
Bst4CI ACNGT 1 cut(s) 295
Bst6I CTCTTC 1 cut(s) 12
BstDEI CTNAG 1 cut(s) 237
BstF5I GGATG 2 cut(s) 37, 264
BstKTI GATC 1 cut(s) 291
BstMBI GATC 1 cut(s) 288
BstMWI GCNNNNNNNGC 1 cut(s) 112
BstNI CCWGG 1 cut(s) 93
BstNSI RCATGY 1 cut(s) 334
BstSCI CCNGG 1 cut(s) 91
BtsCI GGATG 2 cut(s) 37, 264
Cfr13I GGNCC 1 cut(s) 223
Csp6I GTAC 1 cut(s) 301
CviAII CATG 1 cut(s) 331
CviJI RGCY 1 cut(s) 278
CviKI_1 RGCY 1 cut(s) 278
CviQI GTAC 1 cut(s) 301
DdeI CTNAG 1 cut(s) 237
DpnI GATC 1 cut(s) 290
DpnII GATC 1 cut(s) 288
Eam1104I CTCTTC 1 cut(s) 12
EarI CTCTTC 1 cut(s) 12
EciI GGCGGA 1 cut(s) 271
Eco130I CCWWGG 1 cut(s) 135
Eco47I GGWCC 1 cut(s) 223
EcoRII CCWGG 1 cut(s) 91
EcoT14I CCWWGG 1 cut(s) 135
ErhI CCWWGG 1 cut(s) 135
FaeI CATG 1 cut(s) 334
FaiI YATR 4 cut(s) 59, 203, 281, 332
FaqI GGGAC 1 cut(s) 77
FatI CATG 1 cut(s) 330
FokI GGATG 2 cut(s) 44, 271
GsuI CTGGAG 1 cut(s) 114
Hin1II CATG 1 cut(s) 334
HinfI GANTC 1 cut(s) 205
HphI GGTGA 1 cut(s) 283
Hpy166II GTNNAC 1 cut(s) 362
Hpy188I TCNGA 1 cut(s) 31
Hpy188III TCNNGA 1 cut(s) 194
Hpy8I GTNNAC 1 cut(s) 362
HpyAV CCTTC 1 cut(s) 235
HpyCH4III ACNGT 1 cut(s) 295
HpyF10VI GCNNNNNNNGC 1 cut(s) 112
HpyF3I CTNAG 1 cut(s) 237
Hsp92II CATG 1 cut(s) 334
Kzo9I GATC 1 cut(s) 288
LmnI GCTCC 2 cut(s) 95, 157
LpnPI CCDG 2 cut(s) 78, 105
LweI GCATC 1 cut(s) 82
MaeIII GTNAC 1 cut(s) 48
MalI GATC 1 cut(s) 290
MboI GATC 1 cut(s) 288
MboII GAAGA 1 cut(s) 29
MluCI AATT 1 cut(s) 78
MlyI GAGTC 1 cut(s) 214
MnlI CCTC 6 cut(s) 54, 147, 236, 319, 327, 339
MroXI GAANNNNTTC 1 cut(s) 130
MspR9I CCNGG 1 cut(s) 93
MvaI CCWGG 1 cut(s) 93
MwoI GCNNNNNNNGC 1 cut(s) 112
NdeII GATC 1 cut(s) 288
NlaIII CATG 1 cut(s) 334
NlaIV GGNNCC 2 cut(s) 90, 351
NspI RCATGY 1 cut(s) 334
PdmI GAANNNNTTC 1 cut(s) 130
PleI GAGTC 1 cut(s) 213
PpsI GAGTC 1 cut(s) 213
Psp6I CCWGG 1 cut(s) 91
PspGI CCWGG 1 cut(s) 91
PspN4I GGNNCC 2 cut(s) 90, 351
PspPI GGNCC 1 cut(s) 223
RsaI GTAC 1 cut(s) 302
RsaNI GTAC 1 cut(s) 301
Sau3AI GATC 1 cut(s) 288
Sau96I GGNCC 1 cut(s) 223
SchI GAGTC 1 cut(s) 214
ScrFI CCNGG 1 cut(s) 93
SetI ASST 2 cut(s) 58, 280
SfaNI GCATC 1 cut(s) 82
SinI GGWCC 1 cut(s) 223
Sse9I AATT 1 cut(s) 78
SsiI CCGC 1 cut(s) 256
StyD4I CCNGG 1 cut(s) 91
StyI CCWWGG 1 cut(s) 135
TaaI ACNGT 1 cut(s) 295
TaqII GACCGA 1 cut(s) 211
TasI AATT 1 cut(s) 78
TspDTI ATGAA 1 cut(s) 178
VpaK11BI GGWCC 1 cut(s) 223
XceI RCATGY 1 cut(s) 334
XmnI GAANNNNTTC 1 cut(s) 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.