FvH4_1g20722

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000247
Physical Location & Seq
Forward (+)
12879263 .. 12880265
1003 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g20722.t1

Sequence Viewer

Length: 651 bp
ATGCCACAGTATGCTACAGATGAATTGACTCGTGGTCATATGTTGCAGACTAATGCAGAGTATTTCAATAAAGAAAAAAAGAGTGCAGAGTTGAAGTCACATCATTACTCAAAAGCATTCCTAGCTAAGCGGGACACCACAAGGCAAGAGGGTAACGTCTCTCATGGGGTGATATTGCACCAATGTATTTTTCTACCAGTCATGGGCATTTTCGGATGGCTACTTCAACTGAAGTACACATCTACGAATGCATCCCCATTCGTCACCCACTACGTTACCATGCTCATGTTTATCATCGCTTTCTTTGTTTACTTTGGTTTCTTGACTGTGAAGATTAGAGTCGAGGCTCCCAATCCAAATGTGAGGGAATTCATCAACAACATGACCTTCTTGTTCGGAACTCTGGCCTCGATCTTGCTACTTCTTATCCTCGTTCGAGCTTACGGGTTGTTTGCCCTTCTCTTGTGGACGATTTATGTTGCAAGGGATCTTGCAACTAAGAAGTCGTACAGGATTGCAGTTTGTGATGTCTTCAACAGAGTCAAAGAGATGATAAATGGTCATTTGGTGGAGAATAATGCTATACGACCCCAACCACCGCCGCATATCGTTGCACAAATCCAAGATACAGGAGAACCAAATGTTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

217

Amino Acids

24.74

Weight (kDa)

9.34

Isoelectric Point (pI)

33.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000247)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 130, 599, 602
AclWI GGATC 1 cut(s) 495
AcsI RAATTY 1 cut(s) 368
AcuI CTGAAG 1 cut(s) 251
AfaI GTAC 2 cut(s) 236, 509
AfiI CCNNNNNNNGG 1 cut(s) 203
AgsI TTSAA 4 cut(s) 67, 94, 227, 535
AhdI GACNNNNNGTC 1 cut(s) 33
AjuI GAANNNNNNNTTGG 2 cut(s) 174, 206
AluBI AGCT 2 cut(s) 125, 440
AluI AGCT 2 cut(s) 125, 440
Alw26I GTCTC 1 cut(s) 163
AlwI GGATC 1 cut(s) 495
AoxI GGCC 1 cut(s) 405
ApoI RAATTY 1 cut(s) 368
AsuHPI GGTGA 2 cut(s) 181, 256
BauI CACGAG 1 cut(s) 30
BbsI GAAGAC 1 cut(s) 523
BccI CCATC 1 cut(s) 210
BcoDI GTCTC 1 cut(s) 163
BfaI CTAG 1 cut(s) 122
BfmI CTRYAG 1 cut(s) 15
BisI GCNGC 1 cut(s) 602
BlpI GCTNAGC 1 cut(s) 126
BlsI GCNGC 1 cut(s) 603
BmeRI GACNNNNNGTC 1 cut(s) 33
BmiI GGNNCC 1 cut(s) 348
BmsI GCATC 1 cut(s) 260
BpiI GAAGAC 1 cut(s) 523
Bpu1102I GCTNAGC 1 cut(s) 126
Bsc4I CCNNNNNNNGG 1 cut(s) 203
Bse1I ACTGG 1 cut(s) 197
BseGI GGATG 2 cut(s) 221, 251
BseLI CCNNNNNNNGG 1 cut(s) 203
BseNI ACTGG 1 cut(s) 197
BsgI GTGCAG 1 cut(s) 105
BshFI GGCC 1 cut(s) 407
BslFI GGGAC 1 cut(s) 146
BslI CCNNNNNNNGG 1 cut(s) 203
BsmAI GTCTC 1 cut(s) 163
BsmBI CGTCTC 1 cut(s) 163
BsmFI GGGAC 1 cut(s) 146
BsmI GAATGC 2 cut(s) 116, 253
BsnI GGCC 1 cut(s) 407
Bsp143I GATC 2 cut(s) 411, 487
Bsp1720I GCTNAGC 1 cut(s) 126
BspACI CCGC 3 cut(s) 130, 599, 602
BspANI GGCC 1 cut(s) 407
BspLI GGNNCC 1 cut(s) 348
BspPI GGATC 1 cut(s) 495
BsrI ACTGG 1 cut(s) 197
BssMI GATC 2 cut(s) 411, 487
BssSI CACGAG 1 cut(s) 30
Bst2BI CACGAG 1 cut(s) 30
Bst4CI ACNGT 2 cut(s) 9, 328
BstDEI CTNAG 2 cut(s) 126, 498
BstF5I GGATG 2 cut(s) 221, 251
BstKTI GATC 2 cut(s) 414, 490
BstMAI GTCTC 1 cut(s) 163
BstMBI GATC 2 cut(s) 411, 487
BstMWI GCNNNNNNNGC 1 cut(s) 122
BstSFI CTRYAG 1 cut(s) 15
BstV2I GAAGAC 1 cut(s) 523
BstX2I RGATCY 1 cut(s) 487
BstYI RGATCY 1 cut(s) 487
BsuRI GGCC 1 cut(s) 407
BtgZI GCGATG 1 cut(s) 280
BtsCI GGATG 2 cut(s) 221, 251
Csp6I GTAC 2 cut(s) 235, 508
CviAII CATG 5 cut(s) 164, 202, 280, 286, 382
CviJI RGCY 5 cut(s) 125, 220, 347, 407, 440
CviKI_1 RGCY 5 cut(s) 125, 220, 347, 407, 440
CviQI GTAC 2 cut(s) 235, 508
DdeI CTNAG 2 cut(s) 126, 498
DpnI GATC 2 cut(s) 413, 489
DpnII GATC 2 cut(s) 411, 487
DriI GACNNNNNGTC 1 cut(s) 33
Eam1105I GACNNNNNGTC 1 cut(s) 33
Eco57I CTGAAG 1 cut(s) 251
EcoRI GAATTC 1 cut(s) 368
EcoT22I ATGCAT 1 cut(s) 253
Esp3I CGTCTC 1 cut(s) 163
FaeI CATG 5 cut(s) 167, 205, 283, 289, 385
FaqI GGGAC 1 cut(s) 146
FatI CATG 5 cut(s) 163, 201, 279, 285, 381
FauI CCCGC 1 cut(s) 123
FauNDI CATATG 1 cut(s) 39
Fnu4HI GCNGC 1 cut(s) 602
FokI GGATG 2 cut(s) 228, 238
Fsp4HI GCNGC 1 cut(s) 602
FspBI CTAG 1 cut(s) 122
GluI GCNGC 1 cut(s) 602
HaeIII GGCC 1 cut(s) 407
Hin1II CATG 5 cut(s) 167, 205, 283, 289, 385
HinfI GANTC 3 cut(s) 28, 339, 540
HphI GGTGA 2 cut(s) 181, 256
Hpy166II GTNNAC 3 cut(s) 237, 310, 468
Hpy188I TCNGA 3 cut(s) 215, 398, 650
Hpy188III TCNNGA 1 cut(s) 322
Hpy8I GTNNAC 3 cut(s) 237, 310, 468
HpyAV CCTTC 2 cut(s) 397, 467
HpyCH4III ACNGT 2 cut(s) 9, 328
HpyCH4IV ACGT 2 cut(s) 156, 273
HpyCH4V TGCA 9 cut(s) 46, 56, 86, 178, 251, 482, 494, 518, 614
HpyF10VI GCNNNNNNNGC 1 cut(s) 122
HpyF3I CTNAG 2 cut(s) 126, 498
HpySE526I ACGT 2 cut(s) 156, 273
Hsp92II CATG 5 cut(s) 167, 205, 283, 289, 385
Kzo9I GATC 2 cut(s) 411, 487
LmnI GCTCC 1 cut(s) 352
LpnPI CCDG 4 cut(s) 210, 389, 496, 615
LweI GCATC 1 cut(s) 260
MaeI CTAG 1 cut(s) 122
MaeII ACGT 2 cut(s) 156, 273
MaeIII GTNAC 4 cut(s) 96, 152, 262, 274
MalI GATC 2 cut(s) 413, 489
MboI GATC 2 cut(s) 411, 487
MboII GAAGA 2 cut(s) 343, 523
MflI RGATCY 1 cut(s) 487
MluCI AATT 2 cut(s) 23, 368
MlyI GAGTC 3 cut(s) 22, 348, 549
MnlI CCTC 5 cut(s) 142, 337, 357, 418, 440
Mph1103I ATGCAT 1 cut(s) 253
MslI CAYNNNNRTG 1 cut(s) 284
Mva1269I GAATGC 2 cut(s) 116, 253
MwoI GCNNNNNNNGC 1 cut(s) 122
NdeI CATATG 1 cut(s) 39
NdeII GATC 2 cut(s) 411, 487
NlaIII CATG 5 cut(s) 167, 205, 283, 289, 385
NlaIV GGNNCC 1 cut(s) 348
NmuCI GTSAC 2 cut(s) 96, 262
NsiI ATGCAT 1 cut(s) 253
PctI GAATGC 2 cut(s) 116, 253
PkrI GCNGC 1 cut(s) 603
PleI GAGTC 3 cut(s) 22, 347, 548
PpsI GAGTC 3 cut(s) 22, 347, 548
PspN4I GGNNCC 1 cut(s) 348
PsuI RGATCY 1 cut(s) 487
RsaI GTAC 2 cut(s) 236, 509
RsaNI GTAC 2 cut(s) 235, 508
RseI CAYNNNNRTG 1 cut(s) 284
SatI GCNGC 1 cut(s) 602
Sau3AI GATC 2 cut(s) 411, 487
SchI GAGTC 3 cut(s) 22, 348, 549
SetI ASST 5 cut(s) 127, 159, 276, 389, 442
SfaNI GCATC 1 cut(s) 260
SfcI CTRYAG 1 cut(s) 15
SmiMI CAYNNNNRTG 1 cut(s) 284
Sse9I AATT 2 cut(s) 23, 368
SsiI CCGC 3 cut(s) 130, 599, 602
SspMI CTAG 1 cut(s) 122
TaaI ACNGT 2 cut(s) 9, 328
TaiI ACGT 2 cut(s) 159, 276
TaqI TCGA 3 cut(s) 342, 410, 436
TasI AATT 2 cut(s) 23, 368
TatI WGTACW 1 cut(s) 234
TauI GCSGC 1 cut(s) 604
TseFI GTSAC 2 cut(s) 96, 262
Tsp45I GTSAC 2 cut(s) 96, 262
TspDTI ATGAA 2 cut(s) 36, 361
XapI RAATTY 1 cut(s) 368
XspI CTAG 1 cut(s) 122
Zsp2I ATGCAT 1 cut(s) 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.