Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000247

Physical Location & Seq

Genomic Coordinates Reverse (-)

36099146 .. 36101847

Gene Structure 2702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g47710.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGGAAAATCTCATCACACTACTTGATGTAGTCTTAGTCTTCTACTTTGGATTAATGTACGCGGCCAAGAAACTCAAAGCTGATCCCGATCTCAAAGATTTTGGTGCATTCACAAACAACATTAGCATCTTCTTTGGGATTCTTGCCTTGATTTTGGAACTGCTCATCATTGTTCTATCTTATGGATCAGTTCCGTTCTTCCTATGGACCATCCTTACAGTGAGCGTTGTAGTTGCAGTTGTGCTTCTTCTTCGCCTAGCCTTTGTGGAATTGAAGGAGAAACTGAAATGGATCAATGACAGCTTGATGGAATACTGTACAAGGTTATATAGCGGCATTGTTGCATCGCCTGAGTTGATTAGGAGTGACCACACGACAGAGCATAAAACACAAGACGAGAACCAGATGATGGAGCATAAAGCACAAGACCAGAACCAGATGATTGAGCTATCTCCTGTTTATGAGACTGATCTCACTAAATGGCCGCTGATGGGATCAGTTGCTGGACTCGGTCGTGCTTACGAGAAATTGATGGATCTGATTAAGAGGAGCCGCTATTCGACGGAGCATGATGAAACCAAGAACCTCAGCAAGGAGCTACCAGTCACCAACACAAACACAAGGAGGGAGGCTGTTCTTACGAGATATTCCATAGTGAAATTGCATACATGCATAATATCTCTGATCGGCGTCTTGGGATTCTGCCTGCAACTCAAGTTTCCCAATGTGTCTCCATACACGACGGTCCACGGCTCTCAGCTGATGAACGTATTCATCATTGTGACATGCATTTACATCCTCTCTTTGATTGTGATGGCAATTCTGGCCGATGGCAATAACACAGATTTGGAAGATCTGATGATCCAAATCACCCTCTTACTTGGAAGTCTATCCCTGATATTAGAGCTGCTCGTCCTGATTTCAACTTTCGGAATGATCTTACTCTTCTTCTGGTGCATCTGCCTTGTATGGTTCGTGAGCAAGTCTTACCGGTCTCTGAAACCACTCTTCCAAAATGCAGTTGAGCATCTCAAAGGAGACTTTGGAGAATTGAAGCAGAAACTCGTTGATTTGAATCGCCGATTAATGGAAAGTAATGTAATCGCAGCAGTTGTTCATGCCTCTCAGAAATTGAATGACCTGATCCAGAACCACACCAATGAGGTGCCTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005886 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0031090 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sacchrp_dh_NADP

Protein Analysis

392

Amino Acids

44.4

Weight (kDa)

6.01

Isoelectric Point (pI)

29.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000247)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica	MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica	Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis	pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis	RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata	RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora	Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii	Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa	Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha	Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana	Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1165
AccB7I	CCANNNNNTGG	1 cut(s)	409
AccII	CGCG	1 cut(s)	62
AciI	CCGC	4 cut(s)	62, 333, 485, 553
AclWI	GGATC	7 cut(s)	77, 193, 299, 502, 543, 856, 1138
AcoI	YGGCCR	3 cut(s)	63, 482, 825
AcyI	GRCGYC	1 cut(s)	690
AfaI	GTAC	2 cut(s)	59, 319
AfiI	CCNNNNNNNGG	4 cut(s)	409, 491, 592, 1087
AgeI	ACCGGT	1 cut(s)	990
AgsI	TTSAA	5 cut(s)	274, 924, 1054, 1075, 1135
AluBI	AGCT	6 cut(s)	80, 303, 448, 598, 760, 907
AluI	AGCT	6 cut(s)	80, 303, 448, 598, 760, 907
Alw26I	GTCTC	4 cut(s)	458, 735, 999, 1032
AlwI	GGATC	7 cut(s)	77, 193, 299, 502, 543, 856, 1138
AlwNI	CAGNNNCTG	1 cut(s)	503
AoxI	GGCC	3 cut(s)	63, 482, 825
ApeKI	GCWGC	2 cut(s)	907, 1106
AseI	ATTAAT	2 cut(s)	53, 1085
AsiGI	ACCGGT	1 cut(s)	990
Asp700I	GAANNNNTTC	1 cut(s)	770
AspS9I	GGNCC	2 cut(s)	207, 745
AsuHPI	GGTGA	2 cut(s)	598, 862
AvaII	GGWCC	2 cut(s)	207, 745
BanI	GGYRCC	1 cut(s)	1165
BbsI	GAAGAC	1 cut(s)	31
BbvCI	CCTCAGC	1 cut(s)	587
BbvI	GCAGC	2 cut(s)	894, 1118
BccI	CCATC	7 cut(s)	218, 301, 403, 484, 526, 808, 824
BceAI	ACGGC	1 cut(s)	766
BcoDI	GTCTC	4 cut(s)	458, 735, 999, 1032
BfaI	CTAG	1 cut(s)	257
BglII	AGATCT	1 cut(s)	853
BisI	GCNGC	6 cut(s)	63, 334, 485, 553, 908, 1107
BlsI	GCNGC	6 cut(s)	64, 335, 486, 554, 909, 1108
Bme18I	GGWCC	2 cut(s)	207, 745
BmgT120I	GGNCC	2 cut(s)	207, 745
BmiI	GGNNCC	2 cut(s)	551, 1167
BmsI	GCATC	4 cut(s)	135, 353, 966, 1036
BpiI	GAAGAC	1 cut(s)	31
Bpu10I	CCTNAGC	1 cut(s)	587
BpuEI	CTTGAG	1 cut(s)	698
BsaBI	GATNNNNATC	3 cut(s)	87, 866, 1074
BsaHI	GRCGYC	1 cut(s)	690
BsaI	GGTCTC	1 cut(s)	999
BsaJI	CCNNGG	1 cut(s)	748
BsaWI	WCCGGW	1 cut(s)	990
Bsc4I	CCNNNNNNNGG	4 cut(s)	409, 491, 592, 1087
Bse118I	RCCGGY	1 cut(s)	990
Bse1I	ACTGG	1 cut(s)	602
Bse8I	GATNNNNATC	3 cut(s)	87, 866, 1074
BseDI	CCNNGG	1 cut(s)	748
BseGI	GGATG	2 cut(s)	210, 795
BseJI	GATNNNNATC	3 cut(s)	87, 866, 1074
BseLI	CCNNNNNNNGG	4 cut(s)	409, 491, 592, 1087
BseMII	CTCAG	4 cut(s)	342, 601, 770, 1139
BseNI	ACTGG	1 cut(s)	602
BseRI	GAGGAG	1 cut(s)	562
BseXI	GCAGC	2 cut(s)	894, 1118
Bsh1236I	CGCG	1 cut(s)	62
Bsh1285I	CGRYCG	1 cut(s)	514
BshFI	GGCC	3 cut(s)	65, 484, 827
BshNI	GGYRCC	1 cut(s)	1165
BshTI	ACCGGT	1 cut(s)	990
BsiEI	CGRYCG	1 cut(s)	514
BsiSI	CCGG	1 cut(s)	991
BslI	CCNNNNNNNGG	4 cut(s)	409, 491, 592, 1087
BsmAI	GTCTC	4 cut(s)	458, 735, 999, 1032
BsmI	GAATGC	1 cut(s)	107
BsnI	GGCC	3 cut(s)	65, 484, 827
Bso31I	GGTCTC	1 cut(s)	999
Bsp1407I	TGTACA	1 cut(s)	317
BspACI	CCGC	4 cut(s)	62, 333, 485, 553
BspANI	GGCC	3 cut(s)	65, 484, 827
BspCNI	CTCAG	4 cut(s)	343, 600, 769, 1138
BspFNI	CGCG	1 cut(s)	62
BspLI	GGNNCC	2 cut(s)	551, 1167
BspPI	GGATC	7 cut(s)	77, 193, 299, 502, 543, 856, 1138
BspT107I	GGYRCC	1 cut(s)	1165
BspTNI	GGTCTC	1 cut(s)	999
BsrFI	RCCGGY	1 cut(s)	990
BsrGI	TGTACA	1 cut(s)	317
BsrI	ACTGG	1 cut(s)	602
BssAI	RCCGGY	1 cut(s)	990
BssECI	CCNNGG	1 cut(s)	748
BssNI	GRCGYC	1 cut(s)	690
Bst4CI	ACNGT	3 cut(s)	220, 317, 745
Bst6I	CTCTTC	2 cut(s)	950, 1013
BstACI	GRCGYC	1 cut(s)	690
BstAUI	TGTACA	1 cut(s)	317
BstC8I	GCNNGC	1 cut(s)	707
BstDEI	CTNAG	5 cut(s)	34, 351, 587, 756, 1125
BstDSI	CCRYGG	1 cut(s)	748
BstENI	CCTNNNNNAGG	1 cut(s)	590
BstF5I	GGATG	2 cut(s)	210, 795
BstFNI	CGCG	1 cut(s)	62
BstMAI	GTCTC	4 cut(s)	458, 735, 999, 1032
BstMCI	CGRYCG	1 cut(s)	514
BstMWI	GCNNNNNNNGC	1 cut(s)	824
BstNSI	RCATGY	2 cut(s)	672, 789
BstUI	CGCG	1 cut(s)	62
BstV1I	GCAGC	2 cut(s)	894, 1118
BstV2I	GAAGAC	1 cut(s)	31
BstX2I	RGATCY	2 cut(s)	535, 853
BstYI	RGATCY	2 cut(s)	535, 853
BsuRI	GGCC	3 cut(s)	65, 484, 827
BtgI	CCRYGG	1 cut(s)	748
BtgZI	GCGATG	1 cut(s)	330
BtsCI	GGATG	2 cut(s)	210, 795
BtsIMutI	CAGTG	1 cut(s)	225
Cac8I	GCNNGC	1 cut(s)	707
CaiI	CAGNNNCTG	1 cut(s)	503
Cfr10I	RCCGGY	1 cut(s)	990
Cfr13I	GGNCC	2 cut(s)	207, 745
CseI	GACGC	1 cut(s)	679
Csp6I	GTAC	2 cut(s)	58, 318
CspAI	ACCGGT	1 cut(s)	990
CviAII	CATG	4 cut(s)	569, 669, 786, 1118
CviQI	GTAC	2 cut(s)	58, 318
DdeI	CTNAG	5 cut(s)	34, 351, 587, 756, 1125
EaeI	YGGCCR	3 cut(s)	63, 482, 825
Eam1104I	CTCTTC	2 cut(s)	950, 1013
EarI	CTCTTC	2 cut(s)	950, 1013
Eco31I	GGTCTC	1 cut(s)	999
Eco47I	GGWCC	2 cut(s)	207, 745
EcoNI	CCTNNNNNAGG	1 cut(s)	590
EcoT22I	ATGCAT	2 cut(s)	674, 791
FaeI	CATG	4 cut(s)	572, 672, 789, 1121
FatI	CATG	4 cut(s)	568, 668, 785, 1117
Fnu4HI	GCNGC	6 cut(s)	63, 334, 485, 553, 908, 1107
FokI	GGATG	2 cut(s)	197, 782
Fsp4HI	GCNGC	6 cut(s)	63, 334, 485, 553, 908, 1107
FspBI	CTAG	1 cut(s)	257
GluI	GCNGC	6 cut(s)	63, 334, 485, 553, 908, 1107
HaeIII	GGCC	3 cut(s)	65, 484, 827
HapII	CCGG	1 cut(s)	991
HgaI	GACGC	1 cut(s)	679
Hin1I	GRCGYC	1 cut(s)	690
Hin1II	CATG	4 cut(s)	572, 672, 789, 1121
HinfI	GANTC	4 cut(s)	139, 507, 699, 1075
HpaII	CCGG	1 cut(s)	991
HphI	GGTGA	2 cut(s)	598, 862
Hpy166II	GTNNAC	1 cut(s)	748
Hpy188I	TCNGA	6 cut(s)	540, 684, 858, 932, 999, 1128
Hpy188III	TCNNGA	4 cut(s)	86, 916, 976, 1147
Hpy8I	GTNNAC	1 cut(s)	748
Hpy99I	CGWCG	2 cut(s)	565, 745
HpyAV	CCTTC	1 cut(s)	268
HpyCH4III	ACNGT	3 cut(s)	220, 317, 745
HpyCH4IV	ACGT	1 cut(s)	768
HpyCH4V	TGCA	9 cut(s)	107, 236, 344, 664, 672, 709, 789, 957, 1019
HpyF10VI	GCNNNNNNNGC	1 cut(s)	824
HpyF3I	CTNAG	5 cut(s)	34, 351, 587, 756, 1125
HpySE526I	ACGT	1 cut(s)	768
Hsp92I	GRCGYC	1 cut(s)	690
Hsp92II	CATG	4 cut(s)	572, 672, 789, 1121
LmnI	GCTCC	4 cut(s)	412, 549, 565, 595
Lsp1109I	GCAGC	2 cut(s)	894, 1118
LweI	GCATC	4 cut(s)	135, 353, 966, 1036
MaeI	CTAG	1 cut(s)	257
MaeII	ACGT	1 cut(s)	768
MaeIII	GTNAC	3 cut(s)	365, 604, 781
MboII	GAAGA	9 cut(s)	31, 121, 190, 239, 242, 863, 937, 940, 1000
MflI	RGATCY	2 cut(s)	535, 853
MluCI	AATT	6 cut(s)	269, 527, 659, 819, 1049, 1130
MlyI	GAGTC	1 cut(s)	501
MnlI	CCTC	8 cut(s)	540, 596, 618, 622, 809, 884, 1132, 1156
Mph1103I	ATGCAT	2 cut(s)	674, 791
MroXI	GAANNNNTTC	1 cut(s)	770
MseI	TTAA	4 cut(s)	53, 543, 1085, 1174
MslI	CAYNNNNRTG	2 cut(s)	779, 1158
MspA1I	CMGCKG	2 cut(s)	487, 760
MspI	CCGG	1 cut(s)	991
Mva1269I	GAATGC	1 cut(s)	107
MvnI	CGCG	1 cut(s)	62
MwoI	GCNNNNNNNGC	1 cut(s)	824
NlaIII	CATG	4 cut(s)	572, 672, 789, 1121
NlaIV	GGNNCC	2 cut(s)	551, 1167
NmuCI	GTSAC	3 cut(s)	365, 604, 781
NsiI	ATGCAT	2 cut(s)	674, 791
NspI	RCATGY	2 cut(s)	672, 789
PctI	GAATGC	1 cut(s)	107
PdmI	GAANNNNTTC	1 cut(s)	770
PfeI	GAWTC	3 cut(s)	139, 699, 1075
PflFI	GACNNNGTC	1 cut(s)	510
PflMI	CCANNNNNTGG	1 cut(s)	409
PinAI	ACCGGT	1 cut(s)	990
PkrI	GCNGC	6 cut(s)	64, 335, 486, 554, 909, 1108
PleI	GAGTC	1 cut(s)	501
PpsI	GAGTC	1 cut(s)	501
PshBI	ATTAAT	2 cut(s)	53, 1085
PspN4I	GGNNCC	2 cut(s)	551, 1167
PspPI	GGNCC	2 cut(s)	207, 745
PstNI	CAGNNNCTG	1 cut(s)	503
PsuI	RGATCY	2 cut(s)	535, 853
PsyI	GACNNNGTC	1 cut(s)	510
PvuII	CAGCTG	1 cut(s)	760
RsaI	GTAC	2 cut(s)	59, 319
RsaNI	GTAC	2 cut(s)	58, 318
RseI	CAYNNNNRTG	2 cut(s)	779, 1158
SaqAI	TTAA	4 cut(s)	53, 543, 1085, 1174
SatI	GCNGC	6 cut(s)	63, 334, 485, 553, 908, 1107
Sau96I	GGNCC	2 cut(s)	207, 745
SchI	GAGTC	1 cut(s)	501
SfaNI	GCATC	4 cut(s)	135, 353, 966, 1036
SinI	GGWCC	2 cut(s)	207, 745
SmiMI	CAYNNNNRTG	2 cut(s)	779, 1158
SmlI	CTYRAG	1 cut(s)	713
SmoI	CTYRAG	1 cut(s)	713
Sse9I	AATT	6 cut(s)	269, 527, 659, 819, 1049, 1130
SsiI	CCGC	4 cut(s)	62, 333, 485, 553
SspMI	CTAG	1 cut(s)	257
TaaI	ACNGT	3 cut(s)	220, 317, 745
TaiI	ACGT	1 cut(s)	771
TaqI	TCGA	1 cut(s)	560
TaqII	GACCGA	1 cut(s)	500
TasI	AATT	6 cut(s)	269, 527, 659, 819, 1049, 1130
TatI	WGTACW	1 cut(s)	317
TauI	GCSGC	4 cut(s)	65, 336, 487, 555
TfiI	GAWTC	3 cut(s)	139, 699, 1075
Tru1I	TTAA	4 cut(s)	53, 543, 1085, 1174
Tru9I	TTAA	4 cut(s)	53, 543, 1085, 1174
TscAI	CASTG	1 cut(s)	225
TseFI	GTSAC	3 cut(s)	365, 604, 781
TseI	GCWGC	2 cut(s)	907, 1106
Tsp45I	GTSAC	3 cut(s)	365, 604, 781
TspDTI	ATGAA	4 cut(s)	588, 763, 779, 1106
TspGWI	ACGGA	2 cut(s)	183, 578
TspRI	CASTG	1 cut(s)	225
Tth111I	GACNNNGTC	1 cut(s)	510
Van91I	CCANNNNNTGG	1 cut(s)	409
VpaK11BI	GGWCC	2 cut(s)	207, 745
VspI	ATTAAT	2 cut(s)	53, 1085
XagI	CCTNNNNNAGG	1 cut(s)	590
XceI	RCATGY	2 cut(s)	672, 789
XmnI	GAANNNNTTC	1 cut(s)	770
XspI	CTAG	1 cut(s)	257
Zsp2I	ATGCAT	2 cut(s)	674, 791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.