Rmu_sc0000612.1_g000022

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000612.1
OG0000247
Physical Location & Seq
Reverse (-)
69246 .. 70193
948 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000612.1_g000022.1.cds

Sequence Viewer

Length: 633 bp
atgagtcgatgcaactctggtctacggatcgggttacagtcggtcgaattcaaccggttgaaaactatagggattagctgcaagggagggagcctctgggcgggcacaagtcgcccaggtctttgctgttctgggtacgcagcaatcggttgcgacggggaggaggttcaaagttctagaggggcattgcacccatatattttctctttaatcgccatgctgggtttgctccttcaagtgaagcaggcagccgggagtaaatctccatttgacacagatcatctcaccatgctaacctttattgctgttttcttgatttacatcgggtcactggcaattctcaagaaattgcaccctcccaattcagatttggctgaatttctgctcaatattagcctctgctttggatcccttgctgcattcttactattgctcatcttagttcgagcttttgggtggttcaccctctgccaaaaacagaaagaggcagagaatgttgtgccattacaagatgcaggagaacggactgttatacaattacaagatacaggagaaaaagatgtagacgaaaacaaaatggaggagcagagtgttgcagggaaccaaatggaggagccgaatgggctacaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

210

Amino Acids

22.78

Weight (kDa)

5.4

Isoelectric Point (pI)

50.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000247)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 22, 564
AciI CCGC 1 cut(s) 101
AclWI GGATC 3 cut(s) 35, 402, 415
AcsI RAATTY 2 cut(s) 47, 377
AfaI GTAC 1 cut(s) 137
AfiI CCNNNNNNNGG 2 cut(s) 100, 610
AgeI ACCGGT 1 cut(s) 54
AgsI TTSAA 4 cut(s) 52, 61, 170, 236
AjnI CCWGG 1 cut(s) 115
AluBI AGCT 2 cut(s) 78, 449
AluI AGCT 2 cut(s) 78, 449
AlwI GGATC 3 cut(s) 35, 402, 415
ApeKI GCWGC 4 cut(s) 78, 140, 248, 416
ApoI RAATTY 2 cut(s) 47, 377
AsiGI ACCGGT 1 cut(s) 54
AsuC2I CCSGG 1 cut(s) 253
AsuHPI GGTGA 2 cut(s) 277, 454
BaeGI GKGCMC 1 cut(s) 107
BamHI GGATCC 1 cut(s) 407
BbvI GCAGC 4 cut(s) 65, 152, 260, 403
BciT130I CCWGG 1 cut(s) 117
BcnI CCSGG 1 cut(s) 253
BfaI CTAG 1 cut(s) 177
BfmI CTRYAG 1 cut(s) 66
BglI GCCNNNNNGGC 1 cut(s) 622
BisI GCNGC 4 cut(s) 79, 141, 249, 417
BlsI GCNGC 4 cut(s) 80, 142, 250, 418
Bme1390I CCNGG 2 cut(s) 117, 253
BmiI GGNNCC 4 cut(s) 92, 409, 602, 615
BmrFI CCNGG 2 cut(s) 117, 253
BmsI GCATC 1 cut(s) 502
BplI GAGNNNNNCTC 4 cut(s) 78, 110, 247, 279
BpuEI CTTGAG 1 cut(s) 326
BpuMI CCSGG 1 cut(s) 253
BsaBI GATNNNNATC 1 cut(s) 320
BsaJI CCNNGG 1 cut(s) 115
BsaWI WCCGGW 1 cut(s) 54
Bsc4I CCNNNNNNNGG 2 cut(s) 100, 610
Bse118I RCCGGY 1 cut(s) 54
Bse1I ACTGG 1 cut(s) 336
Bse3DI GCAATG 1 cut(s) 185
Bse8I GATNNNNATC 1 cut(s) 320
BseBI CCWGG 1 cut(s) 117
BseDI CCNNGG 1 cut(s) 115
BseJI GATNNNNATC 1 cut(s) 320
BseLI CCNNNNNNNGG 2 cut(s) 100, 610
BseMI GCAATG 1 cut(s) 185
BseNI ACTGG 1 cut(s) 336
BseRI GAGGAG 3 cut(s) 176, 596, 626
BseSI GKGCMC 1 cut(s) 107
BseXI GCAGC 4 cut(s) 65, 152, 260, 403
BseYI CCCAGC 1 cut(s) 220
Bsh1285I CGRYCG 1 cut(s) 45
BshTI ACCGGT 1 cut(s) 54
BsiEI CGRYCG 1 cut(s) 45
BsiSI CCGG 2 cut(s) 55, 252
BslI CCNNNNNNNGG 2 cut(s) 100, 610
BsmI GAATGC 1 cut(s) 419
Bsp1286I GDGCHC 1 cut(s) 107
Bsp143I GATC 3 cut(s) 27, 277, 407
BspACI CCGC 1 cut(s) 101
BspLI GGNNCC 4 cut(s) 92, 409, 602, 615
BspPI GGATC 3 cut(s) 35, 402, 415
BsrDI GCAATG 1 cut(s) 185
BsrFI RCCGGY 1 cut(s) 54
BsrI ACTGG 1 cut(s) 336
BssAI RCCGGY 1 cut(s) 54
BssECI CCNNGG 1 cut(s) 115
BssMI GATC 3 cut(s) 27, 277, 407
Bst2UI CCWGG 1 cut(s) 117
Bst4CI ACNGT 2 cut(s) 39, 529
BstC8I GCNNGC 2 cut(s) 103, 246
BstDEI CTNAG 1 cut(s) 439
BstKTI GATC 3 cut(s) 30, 280, 410
BstMBI GATC 3 cut(s) 27, 277, 407
BstMCI CGRYCG 1 cut(s) 45
BstMWI GCNNNNNNNGC 3 cut(s) 111, 226, 622
BstNI CCWGG 1 cut(s) 117
BstSCI CCNGG 2 cut(s) 115, 251
BstSFI CTRYAG 1 cut(s) 66
BstSLI GKGCMC 1 cut(s) 107
BstV1I GCAGC 4 cut(s) 65, 152, 260, 403
BstX2I RGATCY 1 cut(s) 407
BstYI RGATCY 1 cut(s) 407
BtsIMutI CAGTG 1 cut(s) 329
Cac8I GCNNGC 2 cut(s) 103, 246
Cfr10I RCCGGY 1 cut(s) 54
Csp6I GTAC 1 cut(s) 136
CspAI ACCGGT 1 cut(s) 54
CviAII CATG 2 cut(s) 217, 289
CviJI RGCY 8 cut(s) 78, 93, 251, 374, 396, 449, 616, 625
CviKI_1 RGCY 8 cut(s) 78, 93, 251, 374, 396, 449, 616, 625
CviQI GTAC 1 cut(s) 136
DdeI CTNAG 1 cut(s) 439
DpnI GATC 3 cut(s) 29, 279, 409
DpnII GATC 3 cut(s) 27, 277, 407
EcoRI GAATTC 1 cut(s) 47
EcoRII CCWGG 1 cut(s) 115
FaeI CATG 2 cut(s) 220, 292
FaiI YATR 6 cut(s) 68, 196, 198, 218, 290, 533
FatI CATG 2 cut(s) 216, 288
FauI CCCGC 1 cut(s) 94
FblI GTMKAC 2 cut(s) 22, 564
Fnu4HI GCNGC 4 cut(s) 79, 141, 249, 417
Fsp4HI GCNGC 4 cut(s) 79, 141, 249, 417
FspBI CTAG 1 cut(s) 177
GluI GCNGC 4 cut(s) 79, 141, 249, 417
GsaI CCCAGC 1 cut(s) 224
HapII CCGG 2 cut(s) 55, 252
Hin1II CATG 2 cut(s) 220, 292
HinfI GANTC 1 cut(s) 4
HpaII CCGG 2 cut(s) 55, 252
HphI GGTGA 2 cut(s) 277, 454
Hpy166II GTNNAC 3 cut(s) 23, 462, 565
Hpy188I TCNGA 1 cut(s) 367
Hpy188III TCNNGA 3 cut(s) 177, 313, 343
Hpy8I GTNNAC 3 cut(s) 23, 462, 565
Hpy99I CGWCG 1 cut(s) 158
HpyAV CCTTC 1 cut(s) 242
HpyCH4III ACNGT 2 cut(s) 39, 529
HpyCH4V TGCA 7 cut(s) 12, 81, 190, 352, 419, 515, 596
HpyF10VI GCNNNNNNNGC 3 cut(s) 111, 226, 622
HpyF3I CTNAG 1 cut(s) 439
Hsp92II CATG 2 cut(s) 220, 292
Kzo9I GATC 3 cut(s) 27, 277, 407
LmnI GCTCC 4 cut(s) 90, 234, 583, 613
Lsp1109I GCAGC 4 cut(s) 65, 152, 260, 403
LweI GCATC 1 cut(s) 502
MaeI CTAG 1 cut(s) 177
MaeIII GTNAC 2 cut(s) 33, 327
MalI GATC 3 cut(s) 29, 279, 409
MboI GATC 3 cut(s) 27, 277, 407
MflI RGATCY 1 cut(s) 407
MhlI GDGCHC 1 cut(s) 107
MluCI AATT 6 cut(s) 47, 336, 347, 361, 377, 536
MlyI GAGTC 1 cut(s) 13
MseI TTAA 1 cut(s) 209
MspI CCGG 2 cut(s) 55, 252
MspR9I CCNGG 2 cut(s) 117, 253
Mva1269I GAATGC 1 cut(s) 419
MvaI CCWGG 1 cut(s) 117
MwoI GCNNNNNNNGC 3 cut(s) 111, 226, 622
NciI CCSGG 1 cut(s) 253
NdeII GATC 3 cut(s) 27, 277, 407
NlaIII CATG 2 cut(s) 220, 292
NlaIV GGNNCC 4 cut(s) 92, 409, 602, 615
NmuCI GTSAC 1 cut(s) 327
PctI GAATGC 1 cut(s) 419
PinAI ACCGGT 1 cut(s) 54
PkrI GCNGC 4 cut(s) 80, 142, 250, 418
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
Psp6I CCWGG 1 cut(s) 115
PspFI CCCAGC 1 cut(s) 220
PspGI CCWGG 1 cut(s) 115
PspN4I GGNNCC 4 cut(s) 92, 409, 602, 615
PsuI RGATCY 1 cut(s) 407
RsaI GTAC 1 cut(s) 137
RsaNI GTAC 1 cut(s) 136
SaqAI TTAA 1 cut(s) 209
SatI GCNGC 4 cut(s) 79, 141, 249, 417
Sau3AI GATC 3 cut(s) 27, 277, 407
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 2 cut(s) 117, 253
SduI GDGCHC 1 cut(s) 107
SetI ASST 5 cut(s) 80, 121, 168, 299, 451
SfaNI GCATC 1 cut(s) 502
SfcI CTRYAG 1 cut(s) 66
SmlI CTYRAG 1 cut(s) 341
SmoI CTYRAG 1 cut(s) 341
Sse9I AATT 6 cut(s) 47, 336, 347, 361, 377, 536
SsiI CCGC 1 cut(s) 101
SspI AATATT 1 cut(s) 391
SspMI CTAG 1 cut(s) 177
StyD4I CCNGG 2 cut(s) 115, 251
TaaI ACNGT 2 cut(s) 39, 529
TaqI TCGA 3 cut(s) 7, 45, 445
TaqII GACCGA 1 cut(s) 31
TasI AATT 6 cut(s) 47, 336, 347, 361, 377, 536
Tru1I TTAA 1 cut(s) 209
Tru9I TTAA 1 cut(s) 209
TscAI CASTG 1 cut(s) 336
TseFI GTSAC 1 cut(s) 327
TseI GCWGC 4 cut(s) 78, 140, 248, 416
Tsp45I GTSAC 1 cut(s) 327
TspGWI ACGGA 2 cut(s) 40, 538
TspRI CASTG 1 cut(s) 336
XapI RAATTY 2 cut(s) 47, 377
XbaI TCTAGA 1 cut(s) 176
XcmI CCANNNNNNNNNTGG 1 cut(s) 367
XmiI GTMKAC 2 cut(s) 22, 564
XspI CTAG 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.