RchiOBHm_Chr1g0315341

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000247
Physical Location & Seq
Forward (+)
2471657 .. 2474181
2525 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54586

Sequence Viewer

Length: 156 bp
ATGATCTCTGCTCTACGCCCAGACGCCCTCTGGCGTCGCCGTGCTCCGACGCTGCCCCCAGACGCGGATCGAAGAAGCCCCAGGTGTGCGGAACCCGACCCGGACAGAATTCCCTTTTTCCGGCGTCCCCACGACCGATCCTCCCCTTTTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

51

Amino Acids

5.99

Weight (kDa)

11.35

Isoelectric Point (pI)

121.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000247)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 65
AciI CCGC 2 cut(s) 65, 89
AclWI GGATC 2 cut(s) 75, 132
AcsI RAATTY 1 cut(s) 108
AcyI GRCGYC 3 cut(s) 24, 34, 124
AfiI CCNNNNNNNGG 2 cut(s) 64, 120
AjnI CCWGG 1 cut(s) 80
Alw21I GWGCWC 1 cut(s) 46
AlwI GGATC 2 cut(s) 75, 132
ApeKI GCWGC 1 cut(s) 52
ApoI RAATTY 1 cut(s) 108
AsuC2I CCSGG 1 cut(s) 101
Bbv12I GWGCWC 1 cut(s) 46
BbvI GCAGC 1 cut(s) 39
BceAI ACGGC 1 cut(s) 24
BciT130I CCWGG 1 cut(s) 82
BcnI CCSGG 1 cut(s) 101
BisI GCNGC 1 cut(s) 53
BlsI GCNGC 1 cut(s) 54
Bme1390I CCNGG 2 cut(s) 82, 101
BmiI GGNNCC 1 cut(s) 93
BmrFI CCNGG 2 cut(s) 82, 101
BpuMI CCSGG 1 cut(s) 101
BsaHI GRCGYC 3 cut(s) 24, 34, 124
BsaJI CCNNGG 1 cut(s) 80
BsaXI ACNNNNNCTCC 2 cut(s) 125, 155
Bsc4I CCNNNNNNNGG 2 cut(s) 64, 120
BseBI CCWGG 1 cut(s) 82
BseDI CCNNGG 1 cut(s) 80
BseLI CCNNNNNNNGG 2 cut(s) 64, 120
BseXI GCAGC 1 cut(s) 39
Bsh1236I CGCG 1 cut(s) 65
Bsh1285I CGRYCG 1 cut(s) 136
BsiEI CGRYCG 1 cut(s) 136
BsiHKAI GWGCWC 1 cut(s) 46
BsiSI CCGG 2 cut(s) 101, 121
BslFI GGGAC 1 cut(s) 111
BslI CCNNNNNNNGG 2 cut(s) 64, 120
BsmFI GGGAC 1 cut(s) 111
Bsp1286I GDGCHC 1 cut(s) 46
Bsp143I GATC 3 cut(s) 3, 67, 137
BspACI CCGC 2 cut(s) 65, 89
BspFNI CGCG 1 cut(s) 65
BspLI GGNNCC 1 cut(s) 93
BspPI GGATC 2 cut(s) 75, 132
BssECI CCNNGG 1 cut(s) 80
BssMI GATC 3 cut(s) 3, 67, 137
BssNI GRCGYC 3 cut(s) 24, 34, 124
Bst2UI CCWGG 1 cut(s) 82
BstACI GRCGYC 3 cut(s) 24, 34, 124
BstFNI CGCG 1 cut(s) 65
BstKTI GATC 3 cut(s) 6, 70, 140
BstMBI GATC 3 cut(s) 3, 67, 137
BstMCI CGRYCG 1 cut(s) 136
BstNI CCWGG 1 cut(s) 82
BstSCI CCNGG 2 cut(s) 80, 99
BstUI CGCG 1 cut(s) 65
BstV1I GCAGC 1 cut(s) 39
CseI GACGC 5 cut(s) 23, 32, 58, 71, 113
CviJI RGCY 1 cut(s) 78
CviKI_1 RGCY 1 cut(s) 78
DpnI GATC 3 cut(s) 5, 69, 139
DpnII GATC 3 cut(s) 3, 67, 137
EcoRI GAATTC 1 cut(s) 108
EcoRII CCWGG 1 cut(s) 80
FaqI GGGAC 1 cut(s) 111
Fnu4HI GCNGC 1 cut(s) 53
Fsp4HI GCNGC 1 cut(s) 53
GluI GCNGC 1 cut(s) 53
HapII CCGG 2 cut(s) 101, 121
HgaI GACGC 5 cut(s) 23, 32, 58, 71, 113
Hin1I GRCGYC 3 cut(s) 24, 34, 124
HpaII CCGG 2 cut(s) 101, 121
Hpy188I TCNGA 1 cut(s) 48
Hpy99I CGWCG 2 cut(s) 39, 52
Hsp92I GRCGYC 3 cut(s) 24, 34, 124
Kzo9I GATC 3 cut(s) 3, 67, 137
LmnI GCTCC 1 cut(s) 49
LpnPI CCDG 7 cut(s) 16, 33, 67, 72, 94, 114, 134
Lsp1109I GCAGC 1 cut(s) 39
MalI GATC 3 cut(s) 5, 69, 139
MboI GATC 3 cut(s) 3, 67, 137
MboII GAAGA 1 cut(s) 84
MhlI GDGCHC 1 cut(s) 46
MluCI AATT 1 cut(s) 108
MmeI TCCRAC 1 cut(s) 71
MnlI CCTC 2 cut(s) 38, 151
MspI CCGG 2 cut(s) 101, 121
MspR9I CCNGG 2 cut(s) 82, 101
MvaI CCWGG 1 cut(s) 82
MvnI CGCG 1 cut(s) 65
NciI CCSGG 1 cut(s) 101
NdeII GATC 3 cut(s) 3, 67, 137
NlaIV GGNNCC 1 cut(s) 93
PkrI GCNGC 1 cut(s) 54
Psp6I CCWGG 1 cut(s) 80
PspGI CCWGG 1 cut(s) 80
PspN4I GGNNCC 1 cut(s) 93
SatI GCNGC 1 cut(s) 53
Sau3AI GATC 3 cut(s) 3, 67, 137
ScrFI CCNGG 2 cut(s) 82, 101
SduI GDGCHC 1 cut(s) 46
SetI ASST 1 cut(s) 86
Sse9I AATT 1 cut(s) 108
SsiI CCGC 2 cut(s) 65, 89
StyD4I CCNGG 2 cut(s) 80, 99
TaqI TCGA 1 cut(s) 70
TaqII GACCGA 1 cut(s) 150
TasI AATT 1 cut(s) 108
TseI GCWGC 1 cut(s) 52
XapI RAATTY 1 cut(s) 108
XcmI CCANNNNNNNNNTGG 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.