Rh2BG603800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000247
Physical Location & Seq
Reverse (-)
82534832 .. 82535185
354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG603800.1

Sequence Viewer

Length: 354 bp
ATGCTGGGCTTGCTCCCTCAAGTGAAGCAGGCAGCCGGGAGTAAATCTCCATTTGACACAGATCATCTCACTATGCTGACCTTTATTGCTGTTTTCTTGATTTACATCGGGTCACTGGCAATTCTCAAGAAATTGCACCCTCCCAATTCAGATTTGGCTGAATTTATGCTCAATATTAGCCTCTGCTTTGGATCCCTTGCTGCAGGCTTACCATTGCTCATCCTAGTTCGAGCTTTTGGGTGGTTCACCCTCTGTTTGTGGATCATTTACTTTGTTAGAGACTTTGTAACTAAGGAATCGTATAGGAAAGCCCTTCTTAATTTATATGTGGAGCGAAGTGAAAAAGCGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

13.17

Weight (kDa)

9.0

Isoelectric Point (pI)

38.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000247)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 347
AclWI GGATC 3 cut(s) 186, 199, 269
AcsI RAATTY 1 cut(s) 161
AluBI AGCT 1 cut(s) 233
AluI AGCT 1 cut(s) 233
Alw26I GTCTC 1 cut(s) 273
AlwI GGATC 3 cut(s) 186, 199, 269
ApeKI GCWGC 2 cut(s) 32, 200
ApoI RAATTY 1 cut(s) 161
AsuC2I CCSGG 1 cut(s) 37
AsuHPI GGTGA 1 cut(s) 238
BamHI GGATCC 1 cut(s) 191
BbvI GCAGC 2 cut(s) 44, 187
BcnI CCSGG 1 cut(s) 37
BcoDI GTCTC 1 cut(s) 273
BfaI CTAG 1 cut(s) 224
BfmI CTRYAG 1 cut(s) 201
BisI GCNGC 2 cut(s) 33, 201
BlsI GCNGC 2 cut(s) 34, 202
Bme1390I CCNGG 1 cut(s) 37
BmiI GGNNCC 1 cut(s) 193
BmrFI CCNGG 1 cut(s) 37
BplI GAGNNNNNCTC 2 cut(s) 31, 63
BpuEI CTTGAG 1 cut(s) 110
BpuMI CCSGG 1 cut(s) 37
BsaBI GATNNNNATC 1 cut(s) 104
Bse1I ACTGG 1 cut(s) 120
Bse3DI GCAATG 1 cut(s) 212
Bse8I GATNNNNATC 1 cut(s) 104
BseGI GGATG 1 cut(s) 219
BseJI GATNNNNATC 1 cut(s) 104
BseMI GCAATG 1 cut(s) 212
BseNI ACTGG 1 cut(s) 120
BseXI GCAGC 2 cut(s) 44, 187
BseYI CCCAGC 1 cut(s) 4
BsiSI CCGG 1 cut(s) 36
BsmAI GTCTC 1 cut(s) 273
Bsp143I GATC 3 cut(s) 61, 191, 261
BspACI CCGC 1 cut(s) 347
BspLI GGNNCC 1 cut(s) 193
BspMAI CTGCAG 1 cut(s) 205
BspPI GGATC 3 cut(s) 186, 199, 269
BsrDI GCAATG 1 cut(s) 212
BsrI ACTGG 1 cut(s) 120
BssMI GATC 3 cut(s) 61, 191, 261
BstC8I GCNNGC 3 cut(s) 11, 30, 205
BstDEI CTNAG 1 cut(s) 291
BstF5I GGATG 1 cut(s) 219
BstKTI GATC 3 cut(s) 64, 194, 264
BstMAI GTCTC 1 cut(s) 273
BstMBI GATC 3 cut(s) 61, 191, 261
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstSCI CCNGG 1 cut(s) 35
BstSFI CTRYAG 1 cut(s) 201
BstV1I GCAGC 2 cut(s) 44, 187
BstX2I RGATCY 1 cut(s) 191
BstYI RGATCY 1 cut(s) 191
BtsCI GGATG 1 cut(s) 219
BtsIMutI CAGTG 1 cut(s) 113
Cac8I GCNNGC 3 cut(s) 11, 30, 205
CviJI RGCY 7 cut(s) 9, 35, 158, 180, 207, 233, 311
CviKI_1 RGCY 7 cut(s) 9, 35, 158, 180, 207, 233, 311
DdeI CTNAG 1 cut(s) 291
DpnI GATC 3 cut(s) 63, 193, 263
DpnII GATC 3 cut(s) 61, 191, 261
FaiI YATR 5 cut(s) 74, 167, 303, 325, 327
FalI AAGNNNNNCTT 2 cut(s) 300, 332
Fnu4HI GCNGC 2 cut(s) 33, 201
FokI GGATG 1 cut(s) 206
Fsp4HI GCNGC 2 cut(s) 33, 201
FspBI CTAG 1 cut(s) 224
GluI GCNGC 2 cut(s) 33, 201
GsaI CCCAGC 1 cut(s) 8
HapII CCGG 1 cut(s) 36
HinfI GANTC 1 cut(s) 296
HpaII CCGG 1 cut(s) 36
HphI GGTGA 1 cut(s) 238
Hpy166II GTNNAC 1 cut(s) 246
Hpy188I TCNGA 1 cut(s) 151
Hpy188III TCNNGA 2 cut(s) 97, 127
Hpy8I GTNNAC 1 cut(s) 246
HpyAV CCTTC 1 cut(s) 323
HpyCH4V TGCA 2 cut(s) 136, 203
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpyF3I CTNAG 1 cut(s) 291
Kzo9I GATC 3 cut(s) 61, 191, 261
LmnI GCTCC 2 cut(s) 18, 331
LpnPI CCDG 4 cut(s) 14, 49, 101, 189
Lsp1109I GCAGC 2 cut(s) 44, 187
MaeI CTAG 1 cut(s) 224
MaeIII GTNAC 2 cut(s) 111, 286
MalI GATC 3 cut(s) 63, 193, 263
MboI GATC 3 cut(s) 61, 191, 261
MflI RGATCY 1 cut(s) 191
MluCI AATT 5 cut(s) 120, 131, 145, 161, 319
MnlI CCTC 4 cut(s) 27, 150, 191, 260
MseI TTAA 2 cut(s) 318, 352
MspI CCGG 1 cut(s) 36
MspR9I CCNGG 1 cut(s) 37
MwoI GCNNNNNNNGC 1 cut(s) 10
NciI CCSGG 1 cut(s) 37
NdeII GATC 3 cut(s) 61, 191, 261
NlaIV GGNNCC 1 cut(s) 193
NmuCI GTSAC 1 cut(s) 111
PfeI GAWTC 1 cut(s) 296
PkrI GCNGC 2 cut(s) 34, 202
PspFI CCCAGC 1 cut(s) 4
PspN4I GGNNCC 1 cut(s) 193
PstI CTGCAG 1 cut(s) 205
PsuI RGATCY 1 cut(s) 191
SaqAI TTAA 2 cut(s) 318, 352
SatI GCNGC 2 cut(s) 33, 201
Sau3AI GATC 3 cut(s) 61, 191, 261
ScrFI CCNGG 1 cut(s) 37
SetI ASST 2 cut(s) 83, 235
SfcI CTRYAG 1 cut(s) 201
SmlI CTYRAG 2 cut(s) 18, 125
SmoI CTYRAG 2 cut(s) 18, 125
Sse9I AATT 5 cut(s) 120, 131, 145, 161, 319
SsiI CCGC 1 cut(s) 347
SspI AATATT 1 cut(s) 175
SspMI CTAG 1 cut(s) 224
StyD4I CCNGG 1 cut(s) 35
TaqI TCGA 1 cut(s) 229
TasI AATT 5 cut(s) 120, 131, 145, 161, 319
TfiI GAWTC 1 cut(s) 296
Tru1I TTAA 2 cut(s) 318, 352
Tru9I TTAA 2 cut(s) 318, 352
TscAI CASTG 1 cut(s) 120
TseFI GTSAC 1 cut(s) 111
TseI GCWGC 2 cut(s) 32, 200
Tsp45I GTSAC 1 cut(s) 111
TspRI CASTG 1 cut(s) 120
XapI RAATTY 1 cut(s) 161
XcmI CCANNNNNNNNNTGG 1 cut(s) 151
XspI CTAG 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.